Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001864

Physical Location & Seq

Genomic Coordinates Forward (+)

5154235 .. 5163673

Gene Structure 9439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG051000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCACGCTATGGCGATAGCCAAACGGAGACCCAGGACTCGTCGCTGACCCAAATCTACGACCAGGGCTCTACCTACTTTGGAGACCACTCCCAGAACCAAGAGCTCAAGGCAATTACTGGGTTCCAAGCCTTTTCGGCTAACTCGGGCTCGGAGGTCGAGGACTCGGCTTCCATGGCCCGGACTCAGCTCCCTGGTACCGAGTTTACAGGTCACTTGGTTGAGTCGATTGGATGGCCCAAGTCTCAATATACCATCTGTACTTCAGCATTACATGATGAGAACCTTACAGCGCCAAACAAACCTCATATGTTCGTAGTAACTAAAAGGAAAAGCACAATTCCCAATTTTTTGCTTCTTCTTTCAAATGCTTCAACAATATCAGTTATGCCGGCCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

133

Amino Acids

14.52

Weight (kDa)

5.02

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G65510 AT5G65510 AT5G65510 AT5G65510
fragaria_vesca	FvH4_1g19530
malus_domestica	MD01G1040700.v1.1 MD15G1310900.v1.1
prunus_persica	Prupe.6G142500_v2.0.a1 Prupe.6G203000_v2.0.a1
pyrus_communis	pycom01g06820 pycom15g27450
rosa_chinensis	RchiOBHm_Chr2g0111031 RchiOBHm_Chr4g0405741
rosa_laevigata	RLG00000012851 RLG00000017859 RLG00000020876
rosa_multiflora	Rmu_co8195526.1_g000001 Rmu_sc0000041.1_g000014 Rmu_sc0003994.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132730 Rroxscaffold_5G00366230
rosa_rugosa	Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700
rosa_samantha	Rh2AG222800 Rh2AG222900 Rh2BG234800 Rh2CG226300 Rh2DG230600 Rh2DG230700 Rh2DG399700 Rh4BG037900 Rh4CG141400 Rh6BG125200 Rh6CG051000 Rh7CG223000
rosa_wichuraiana	Rw2G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	2 cut(s)	199, 262
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	366, 375
AjnI	CCWGG	3 cut(s)	33, 63, 193
AluBI	AGCT	2 cut(s)	106, 190
AluI	AGCT	2 cut(s)	106, 190
Alw21I	GWGCWC	1 cut(s)	108
Alw26I	GTCTC	3 cut(s)	23, 78, 249
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	3 cut(s)	177, 236, 393
Asp718I	GGTACC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	2 cut(s)	178, 237
AsuC2I	CCSGG	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	3 cut(s)	71, 108, 152
Bbv12I	GWGCWC	1 cut(s)	108
BccI	CCATC	2 cut(s)	228, 263
BciT130I	CCWGG	3 cut(s)	35, 65, 195
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	3 cut(s)	23, 78, 249
BfoI	RGCGCY	1 cut(s)	296
BglI	GCCNNNNNGGC	1 cut(s)	137
Bme1390I	CCNGG	4 cut(s)	35, 65, 181, 195
BmeT110I	CYCGRG	1 cut(s)	145
BmgT120I	GGNCC	2 cut(s)	178, 237
BmiI	GGNNCC	2 cut(s)	125, 199
BmrFI	CCNGG	4 cut(s)	35, 65, 181, 195
BmrI	ACTGGG	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	181
BsaI	GGTCTC	2 cut(s)	23, 78
BsaJI	CCNNGG	4 cut(s)	33, 64, 174, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	3 cut(s)	35, 65, 195
BseDI	CCNNGG	4 cut(s)	33, 64, 174, 193
BseGI	GGATG	1 cut(s)	239
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	124
BseX3I	CGGCCG	1 cut(s)	393
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	3 cut(s)	179, 238, 395
BshNI	GGYRCC	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	181, 392
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	3 cut(s)	23, 78, 249
BsnI	GGCC	3 cut(s)	179, 238, 395
Bso31I	GGTCTC	2 cut(s)	23, 78
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	3 cut(s)	71, 108, 152
Bsp19I	CCATGG	1 cut(s)	174
BspANI	GGCC	3 cut(s)	179, 238, 395
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	125, 199
BspT107I	GGYRCC	1 cut(s)	197
BspTNI	GGTCTC	2 cut(s)	23, 78
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	124
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	4 cut(s)	33, 64, 174, 193
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	3 cut(s)	35, 65, 195
BstC8I	GCNNGC	2 cut(s)	7, 393
BstDEI	CTNAG	1 cut(s)	186
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	239
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	295
BstMAI	GTCTC	3 cut(s)	23, 78, 249
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 176
BstNI	CCWGG	3 cut(s)	35, 65, 195
BstSCI	CCNGG	4 cut(s)	33, 63, 179, 193
BstZI	CGGCCG	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	179, 238, 395
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	239
Cac8I	GCNNGC	2 cut(s)	7, 393
CfoI	GCGC	1 cut(s)	295
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	178, 237
Csp6I	GTAC	2 cut(s)	198, 261
CviAII	CATG	2 cut(s)	175, 275
CviQI	GTAC	2 cut(s)	198, 261
DdeI	CTNAG	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	393
EagI	CGGCCG	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	106
EclXI	CGGCCG	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	3 cut(s)	71, 108, 152
Eco31I	GGTCTC	2 cut(s)	23, 78
Eco52I	CGGCCG	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	145
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	3 cut(s)	33, 63, 193
EcoT14I	CCWWGG	1 cut(s)	174
EcoT38I	GRGCYC	3 cut(s)	71, 108, 152
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	2 cut(s)	178, 278
FaiI	YATR	7 cut(s)	12, 176, 252, 276, 309, 311, 389
FatI	CATG	2 cut(s)	174, 274
FauNDI	CATATG	1 cut(s)	309
FokI	GGATG	1 cut(s)	246
FriOI	GRGCYC	3 cut(s)	71, 108, 152
GlaI	GCGC	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	179, 238, 395
HapII	CCGG	2 cut(s)	181, 392
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	178, 278
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HinfI	GANTC	4 cut(s)	38, 164, 184, 224
HpaII	CCGG	2 cut(s)	181, 392
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	154
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 176
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	178, 278
HspAI	GCGC	1 cut(s)	293
KpnI	GGTACC	1 cut(s)	201
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
LmnI	GCTCC	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	212, 319
MboII	GAAGA	1 cut(s)	350
MhlI	GDGCHC	3 cut(s)	71, 108, 152
MluCI	AATT	3 cut(s)	114, 339, 346
MlyI	GAGTC	4 cut(s)	32, 158, 178, 233
MnlI	CCTC	3 cut(s)	148, 154, 315
MroNI	GCCGGC	1 cut(s)	391
MspI	CCGG	2 cut(s)	181, 392
MspR9I	CCNGG	4 cut(s)	35, 65, 181, 195
MvaI	CCWGG	3 cut(s)	35, 65, 195
MwoI	GCNNNNNNNGC	2 cut(s)	137, 176
NaeI	GCCGGC	1 cut(s)	393
NciI	CCSGG	1 cut(s)	181
NcoI	CCATGG	1 cut(s)	174
NdeI	CATATG	1 cut(s)	309
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	2 cut(s)	178, 278
NlaIV	GGNNCC	2 cut(s)	125, 199
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	212
PdiI	GCCGGC	1 cut(s)	393
PleI	GAGTC	4 cut(s)	32, 158, 178, 232
PpsI	GAGTC	4 cut(s)	32, 158, 178, 232
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	3 cut(s)	33, 63, 193
PspGI	CCWGG	3 cut(s)	33, 63, 193
PspN4I	GGNNCC	2 cut(s)	125, 199
PspPI	GGNCC	2 cut(s)	178, 237
RsaI	GTAC	2 cut(s)	199, 262
RsaNI	GTAC	2 cut(s)	198, 261
SacI	GAGCTC	1 cut(s)	108
Sau96I	GGNCC	2 cut(s)	178, 237
SchI	GAGTC	4 cut(s)	32, 158, 178, 233
ScrFI	CCNGG	4 cut(s)	35, 65, 181, 195
SduI	GDGCHC	3 cut(s)	71, 108, 152
SetI	ASST	7 cut(s)	77, 108, 159, 192, 214, 288, 307
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	3 cut(s)	114, 339, 346
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	4 cut(s)	33, 63, 179, 193
StyI	CCWWGG	1 cut(s)	174
TaqI	TCGA	2 cut(s)	159, 227
TasI	AATT	3 cut(s)	114, 339, 346
TatI	WGTACW	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	212
Tsp45I	GTSAC	1 cut(s)	212
TspGWI	ACGGA	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.