Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001864

Physical Location & Seq

Genomic Coordinates Reverse (-)

23580700 .. 23581916

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG222800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAAGATAAGGCAGCAAGGGCTTATGATTTGGCTGCTCTGAAATACTGGGGACCTACTGCGACTACCAACTTTCCTGTTTCAACTTACAGCAAAGAACTGGAAGACATGAAACTTGTGACCAAGCAAGAATTCATTGCTTCCCTCAGAAGGAAAAGTAGTGGTTTTTCAAGGGGAGCTTCTATGTACCGAGGTGTAACAAGGCATCATCAACAAGGGCGCTGGCAAGCAAGAATAGGCCGTGTTGCTGGGAACAAAGATCTTTACCTAGGGACTTTTGCTACTGAAGAGGAAGCAGCAGAGGCCTATGACATAGCAGCCATAAAGTTTAGGGGCATCAATGCAGTAACAAATTTCGAGATGAATCGATATGATGTTGAAGCTATTGGCAAGAGTTCTCTTCCTGTTGGTGGTTCAGCGAAGCGCTTAAAGATCTCTCTTGAATCGGAAGAGCAGAAACCATCTGTGACCAACCATGATCAGCAGCAGCAGAATTCTCAGTGCAGCAGTGGCAGCAACAGCAACAACATCAATTTTGCTAATTCCATGGCGCAACCAATTCAGACCATCCCATGTGGAATTCCATATGATCATGCTGCAGCACTTTATCATCACAACCTTCTCCAACAGTTCCAATCTTATAACTACTATGGCACTACTTCGGATTCTTCAGCAGGATCGCACCCTAACATTGCAACAAGTCAGATGACTATGGCGATGATGCCCCAGCAGCAGCAGCAGCAGCAGCCAGCTGAGTTCTTTCTCTGGCCTCAGTACCAAACTCATCATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

264

Amino Acids

29.55

Weight (kDa)

7.8

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	63 - 112	7.3e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G65510 AT5G65510 AT5G65510 AT5G65510
fragaria_vesca	FvH4_1g19530
malus_domestica	MD01G1040700.v1.1 MD15G1310900.v1.1
prunus_persica	Prupe.6G142500_v2.0.a1 Prupe.6G203000_v2.0.a1
pyrus_communis	pycom01g06820 pycom15g27450
rosa_chinensis	RchiOBHm_Chr2g0111031 RchiOBHm_Chr4g0405741
rosa_laevigata	RLG00000012851 RLG00000017859 RLG00000020876
rosa_multiflora	Rmu_co8195526.1_g000001 Rmu_sc0000041.1_g000014 Rmu_sc0003994.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132730 Rroxscaffold_5G00366230
rosa_rugosa	Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700
rosa_samantha	Rh2AG222800 Rh2AG222900 Rh2BG234800 Rh2CG226300 Rh2DG230600 Rh2DG230700 Rh2DG399700 Rh4BG037900 Rh4CG141400 Rh6BG125200 Rh6CG051000 Rh7CG223000
rosa_wichuraiana	Rw2G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
AclWI	GGATC	1 cut(s)	685
AcsI	RAATTY	4 cut(s)	131, 352, 493, 579
AcuI	CTGAAG	2 cut(s)	306, 654
AfaI	GTAC	2 cut(s)	188, 776
AfeI	AGCGCT	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	150, 410
AgsI	TTSAA	4 cut(s)	84, 171, 380, 443
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	3 cut(s)	179, 383, 752
AluI	AGCT	3 cut(s)	179, 383, 752
AlwI	GGATC	1 cut(s)	685
Aor51HI	AGCGCT	1 cut(s)	425
AoxI	GGCC	3 cut(s)	238, 303, 767
ApoI	RAATTY	4 cut(s)	131, 352, 493, 579
AspA2I	CCTAGG	1 cut(s)	268
AspLEI	GCGC	3 cut(s)	222, 426, 553
AspS9I	GGNCC	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	53
AvrII	CCTAGG	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	111
BccI	CCATC	2 cut(s)	469, 575
BceAI	ACGGC	1 cut(s)	225
BclI	TGATCA	2 cut(s)	478, 589
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	597
BfoI	RGCGCY	2 cut(s)	223, 427
BglII	AGATCT	2 cut(s)	259, 432
BlnI	CCTAGG	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	54
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	3 cut(s)	214, 345, 711
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	111
Bsa29I	ATCGAT	1 cut(s)	367
BsaJI	CCNNGG	3 cut(s)	190, 268, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 410
Bse1I	ACTGG	2 cut(s)	53, 105
Bse3DI	GCAATG	2 cut(s)	135, 690
BseCI	ATCGAT	1 cut(s)	367
BseDI	CCNNGG	3 cut(s)	190, 268, 546
BseGI	GGATG	1 cut(s)	567
BseLI	CCNNNNNNNGG	2 cut(s)	150, 410
BseMI	GCAATG	2 cut(s)	135, 690
BseMII	CTCAG	4 cut(s)	160, 512, 744, 785
BseNI	ACTGG	2 cut(s)	53, 105
BseYI	CCCAGC	2 cut(s)	248, 726
BsgI	GTGCAG	1 cut(s)	523
BshFI	GGCC	3 cut(s)	240, 305, 769
BshVI	ATCGAT	1 cut(s)	367
BslFI	GGGAC	2 cut(s)	66, 286
BslI	CCNNNNNNNGG	2 cut(s)	150, 410
BsmFI	GGGAC	2 cut(s)	66, 286
BsnI	GGCC	3 cut(s)	240, 305, 769
Bsp143I	GATC	5 cut(s)	259, 432, 478, 589, 677
Bsp19I	CCATGG	1 cut(s)	546
BspANI	GGCC	3 cut(s)	240, 305, 769
BspCNI	CTCAG	4 cut(s)	159, 511, 745, 784
BspDI	ATCGAT	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	601
BspPI	GGATC	1 cut(s)	685
BspQI	GCTCTTC	1 cut(s)	444
BsrDI	GCAATG	2 cut(s)	135, 690
BsrI	ACTGG	2 cut(s)	53, 105
BssECI	CCNNGG	3 cut(s)	190, 268, 546
BssMI	GATC	5 cut(s)	259, 432, 478, 589, 677
BssT1I	CCWWGG	2 cut(s)	268, 546
Bst4CI	ACNGT	1 cut(s)	630
Bst6I	CTCTTC	3 cut(s)	282, 405, 444
BstC8I	GCNNGC	3 cut(s)	224, 228, 750
BstDEI	CTNAG	4 cut(s)	146, 498, 753, 771
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	1 cut(s)	567
BstH2I	RGCGCY	2 cut(s)	223, 427
BstHHI	GCGC	3 cut(s)	222, 426, 553
BstKTI	GATC	5 cut(s)	262, 435, 481, 592, 680
BstMBI	GATC	5 cut(s)	259, 432, 478, 589, 677
BstSFI	CTRYAG	1 cut(s)	597
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	259, 432
BstYI	RGATCY	2 cut(s)	259, 432
Bsu15I	ATCGAT	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	240, 305, 769
BsuTUI	ATCGAT	1 cut(s)	367
BtgI	CCRYGG	1 cut(s)	546
BtgZI	GCGATG	1 cut(s)	731
BtsCI	GGATG	1 cut(s)	567
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	2 cut(s)	506, 514
Cac8I	GCNNGC	3 cut(s)	224, 228, 750
CfoI	GCGC	3 cut(s)	222, 426, 553
Cfr13I	GGNCC	1 cut(s)	53
ClaI	ATCGAT	1 cut(s)	367
Csp6I	GTAC	2 cut(s)	187, 775
CviAII	CATG	5 cut(s)	109, 476, 547, 573, 593
CviQI	GTAC	2 cut(s)	187, 775
DdeI	CTNAG	4 cut(s)	146, 498, 753, 771
DpnI	GATC	5 cut(s)	261, 434, 480, 591, 679
DpnII	GATC	5 cut(s)	259, 432, 478, 589, 677
Eam1104I	CTCTTC	3 cut(s)	282, 405, 444
EarI	CTCTTC	3 cut(s)	282, 405, 444
Eco130I	CCWWGG	2 cut(s)	268, 546
Eco147I	AGGCCT	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	53
Eco47III	AGCGCT	1 cut(s)	425
Eco57I	CTGAAG	2 cut(s)	306, 654
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRI	GAATTC	3 cut(s)	131, 493, 579
EcoT14I	CCWWGG	2 cut(s)	268, 546
ErhI	CCWWGG	2 cut(s)	268, 546
FaeI	CATG	5 cut(s)	112, 479, 550, 576, 596
FalI	AAGNNNNNCTT	2 cut(s)	163, 195
FaqI	GGGAC	2 cut(s)	66, 286
FatI	CATG	5 cut(s)	108, 475, 546, 572, 592
FauNDI	CATATG	1 cut(s)	586
FbaI	TGATCA	2 cut(s)	478, 589
FokI	GGATG	1 cut(s)	554
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	3 cut(s)	221, 425, 552
GsaI	CCCAGC	2 cut(s)	252, 730
HaeII	RGCGCY	2 cut(s)	223, 427
HaeIII	GGCC	3 cut(s)	240, 305, 769
HhaI	GCGC	3 cut(s)	222, 426, 553
Hin1II	CATG	5 cut(s)	112, 479, 550, 576, 596
Hin6I	GCGC	3 cut(s)	220, 424, 551
HinP1I	GCGC	3 cut(s)	220, 424, 551
HinfI	GANTC	3 cut(s)	364, 443, 665
Hpy188I	TCNGA	6 cut(s)	42, 149, 448, 564, 664, 705
Hpy188III	TCNNGA	2 cut(s)	358, 440
HpyAV	CCTTC	2 cut(s)	144, 629
HpyCH4III	ACNGT	1 cut(s)	630
HpyCH4V	TGCA	4 cut(s)	344, 504, 599, 695
HpyF3I	CTNAG	4 cut(s)	146, 498, 753, 771
Hsp92II	CATG	5 cut(s)	112, 479, 550, 576, 596
HspAI	GCGC	3 cut(s)	220, 424, 551
Ksp22I	TGATCA	2 cut(s)	478, 589
Kzo9I	GATC	5 cut(s)	259, 432, 478, 589, 677
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	176
LweI	GCATC	3 cut(s)	214, 345, 711
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	4 cut(s)	118, 196, 346, 466
MalI	GATC	5 cut(s)	261, 434, 480, 591, 679
MboI	GATC	5 cut(s)	259, 432, 478, 589, 677
MboII	GAAGA	6 cut(s)	17, 116, 299, 392, 461, 660
MflI	RGATCY	2 cut(s)	259, 432
MluCI	AATT	7 cut(s)	131, 352, 493, 532, 541, 558, 579
MmeI	TCCRAC	1 cut(s)	649
MnlI	CCTC	5 cut(s)	155, 185, 283, 295, 780
MseI	TTAA	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	752
NcoI	CCATGG	1 cut(s)	546
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	5 cut(s)	259, 432, 478, 589, 677
NlaIII	CATG	5 cut(s)	112, 479, 550, 576, 596
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	118, 466
PceI	AGGCCT	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	444
PfeI	GAWTC	3 cut(s)	364, 443, 665
PpuMI	RGGWCCY	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	642
Psp5II	RGGWCCY	1 cut(s)	53
PspFI	CCCAGC	2 cut(s)	248, 726
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	53
PspPPI	RGGWCCY	1 cut(s)	53
PstI	CTGCAG	1 cut(s)	601
PsuI	RGATCY	2 cut(s)	259, 432
PvuII	CAGCTG	1 cut(s)	752
RsaI	GTAC	2 cut(s)	188, 776
RsaNI	GTAC	2 cut(s)	187, 775
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	428
Sau3AI	GATC	5 cut(s)	259, 432, 478, 589, 677
Sau96I	GGNCC	1 cut(s)	53
SetI	ASST	7 cut(s)	58, 181, 196, 270, 385, 621, 754
SfaNI	GCATC	3 cut(s)	214, 345, 711
SfcI	CTRYAG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	53
Sse9I	AATT	7 cut(s)	131, 352, 493, 532, 541, 558, 579
SseBI	AGGCCT	1 cut(s)	305
SspMI	CTAG	1 cut(s)	269
StuI	AGGCCT	1 cut(s)	305
StyI	CCWWGG	2 cut(s)	268, 546
TaaI	ACNGT	1 cut(s)	630
TaqI	TCGA	2 cut(s)	357, 367
TasI	AATT	7 cut(s)	131, 352, 493, 532, 541, 558, 579
TfiI	GAWTC	3 cut(s)	364, 443, 665
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	2 cut(s)	506, 514
TseFI	GTSAC	2 cut(s)	118, 466
Tsp45I	GTSAC	2 cut(s)	118, 466
TspDTI	ATGAA	4 cut(s)	124, 125, 377, 780
TspRI	CASTG	2 cut(s)	506, 514
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	4 cut(s)	131, 352, 493, 579
XmaJI	CCTAGG	1 cut(s)	268
XspI	CTAG	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.