Rh2BG234800

AP2-like ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
23387007 .. 23390975
3969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG234800.1

Sequence Viewer

Length: 1356 bp
ATGGCTCCGGCGACTAATTGGCTATCCTTCTCCTTAATGTCCCCCATGGAAATGCTAAGGTCCTCCTCCGAGTCTGAGTCTCCCTTCGCTCAGGCTTACGACACCGCCGCTGTTACTGCTCCCTCTCCTCATTACTACCTCGACAACTTCTACGCCAACGGGTGGACGAACCCGAAATCCGAAGTGTTCTACACGGAAGGTGAGGAAGAGCAGCAAACGAAACAGACCCACTCCGATTCGCTTGCGAGCTTCATCGACCCACAAACCCAGAACCAGCCGATTCCCAAGCTCGAGGACTTTCTCGGAGACTCCATGGTGCGCTACGCCGATAGCCAAACGGAGACGCAGGACTCGTCGCTGACCCAAATCTACGACCAGGGCTCGGCCTACTTTGGTGACCACCACCAGAACCAGGATCTCAAGGCGATTACTGGGTTCCAAGCCTTTTCGGCTAACTCGGGCTCCGAGGTCGAGGACTCGGCCTCCATGGCCAGGACTCAGCTCGCTTGCGCCGAGTTTACGGGTCACTCGGTTGAGTCGATTGGGAACGAGTTGGGTTTCTCGAGCTGTGGTGCAACGAACACAAGCAATGCTTTGTCTCTTGGGGTCACTAATACTAATACTAATACGAATACTAATACTCAGACCTCGAATCGTGAGAAGGCTATTGTTGCGGTGGACACTGATAGCACTAAGAAAATATCTGATACTTTTGGGCAGAGGACTTCAATTTACAGAGGAGTTACTAGGCATCATCAACAAGGGCGCTGGCAAGCAAGAATAGGCCGTGTTGCTGGGAACAAAGACCTTTACCTAGGGACTTTTGCTACTGAAGAGGAAGCAGCAGAGGCCTATGACATAGCAGCCATAAAGTTTAGGGGCATCAATGCAGTAACAAATTTCGAGATGAATCGATATGATGTTGAAGCTATTGGCAAGAGTTCTCTTCCTGTTGGTGGTTCAGCGAAGCGCTTAAAGATCTCTCTTGAATCGGAAGAGCAGAAACCATCTGTGACCAACCATGATCAGCAGCAGCAGAATTCTCAGTGCAGCAGTGGCAGCAACAGCAACAGCAACAGCAACAACATCAATTTTGCTAATTCCATGGCGCAACCAATTCAGACCATCCCATGTGGAATTCCATATGATCATGCTGCAGCACTATATCATCACAACCTTCTCCAACAGTTCCAATCTTATAACTACTATGGCACTACTTCAGATTCTTCAGCAGGATCGCACCCTAACATTGCAACAAGTCAGATGACTATGGCGATGATGCCCCAGCAGCAGCAGCAGCAGCAGCAGCCAGCTGAGTTCTTTCTCTGGCCTCAGTACCAAACTCATCATTCATAG

Protein Analysis

451

Amino Acids

49.69

Weight (kDa)

4.97

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 245 - 294 1.4e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1200
AccB7I CCANNNNNTGG 1 cut(s) 162
AciI CCGC 3 cut(s) 105, 108, 674
AclWI GGATC 2 cut(s) 423, 1243
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 3 cut(s) 898, 1039, 1137
AcuI CTGAAG 3 cut(s) 852, 1203, 1212
AfaI GTAC 1 cut(s) 1337
AfeI AGCGCT 1 cut(s) 971
AfiI CCNNNNNNNGG 5 cut(s) 162, 382, 412, 492, 956
AgsI TTSAA 3 cut(s) 729, 926, 989
AjnI CCWGG 3 cut(s) 375, 411, 491
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 6 cut(s) 249, 289, 502, 567, 929, 1313
AluI AGCT 6 cut(s) 249, 289, 502, 567, 929, 1313
Alw26I GTCTC 4 cut(s) 84, 300, 335, 603
AlwI GGATC 2 cut(s) 423, 1243
Ama87I CYCGRG 3 cut(s) 290, 457, 562
Aor51HI AGCGCT 1 cut(s) 971
AoxI GGCC 6 cut(s) 384, 480, 489, 784, 849, 1328
ApoI RAATTY 3 cut(s) 898, 1039, 1137
AspA2I CCTAGG 1 cut(s) 814
AspLEI GCGC 5 cut(s) 321, 512, 768, 972, 1111
AspS9I GGNCC 1 cut(s) 60
AsuHPI GGTGA 2 cut(s) 212, 407
AvaI CYCGRG 3 cut(s) 290, 457, 562
AvaII GGWCC 1 cut(s) 60
AvrII CCTAGG 1 cut(s) 814
BalI TGGCCA 1 cut(s) 491
BanII GRGCYC 2 cut(s) 383, 464
BccI CCATC 2 cut(s) 1015, 1133
BceAI ACGGC 1 cut(s) 771
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 3 cut(s) 377, 413, 493
BclI TGATCA 2 cut(s) 1024, 1147
BcoDI GTCTC 4 cut(s) 84, 300, 335, 603
BfaI CTAG 2 cut(s) 747, 815
BfmI CTRYAG 1 cut(s) 1155
BfoI RGCGCY 2 cut(s) 769, 973
BglI GCCNNNNNGGC 2 cut(s) 449, 488
BglII AGATCT 1 cut(s) 978
BlnI CCTAGG 1 cut(s) 814
Bme1390I CCNGG 3 cut(s) 377, 413, 493
Bme18I GGWCC 1 cut(s) 60
BmeT110I CYCGRG 3 cut(s) 290, 457, 562
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 3 cut(s) 6, 437, 463
BmrFI CCNGG 3 cut(s) 377, 413, 493
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 3 cut(s) 760, 891, 1269
BmuI ACTGGG 1 cut(s) 441
Bpu10I CCTNAGC 2 cut(s) 56, 90
BpuEI CTTGAG 1 cut(s) 404
Bsa29I ATCGAT 1 cut(s) 913
BsaJI CCNNGG 7 cut(s) 45, 312, 376, 465, 486, 814, 1104
BsaXI ACNNNNNCTCC 4 cut(s) 446, 467, 476, 497
Bsc4I CCNNNNNNNGG 5 cut(s) 162, 382, 412, 492, 956
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 2 cut(s) 595, 1248
BseBI CCWGG 3 cut(s) 377, 413, 493
BseCI ATCGAT 1 cut(s) 913
BseDI CCNNGG 7 cut(s) 45, 312, 376, 465, 486, 814, 1104
BseGI GGATG 1 cut(s) 1125
BseLI CCNNNNNNNGG 5 cut(s) 162, 382, 412, 492, 956
BseMI GCAATG 2 cut(s) 595, 1248
BseMII CTCAG 7 cut(s) 66, 104, 512, 656, 1058, 1305, 1346
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 3 cut(s) 55, 117, 753
BseYI CCCAGC 2 cut(s) 794, 1284
BsgI GTGCAG 1 cut(s) 1069
BshFI GGCC 6 cut(s) 386, 482, 491, 786, 851, 1330
BshVI ATCGAT 1 cut(s) 913
BsiHKCI CYCGRG 3 cut(s) 290, 457, 562
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 2 cut(s) 25, 832
BslI CCNNNNNNNGG 5 cut(s) 162, 382, 412, 492, 956
BsmAI GTCTC 4 cut(s) 84, 300, 335, 603
BsmBI CGTCTC 1 cut(s) 335
BsmFI GGGAC 2 cut(s) 25, 832
BsnI GGCC 6 cut(s) 386, 482, 491, 786, 851, 1330
BsoBI CYCGRG 3 cut(s) 290, 457, 562
Bsp1286I GDGCHC 2 cut(s) 383, 464
Bsp143I GATC 5 cut(s) 415, 978, 1024, 1147, 1235
Bsp19I CCATGG 4 cut(s) 45, 312, 486, 1104
BspACI CCGC 3 cut(s) 105, 108, 674
BspANI GGCC 6 cut(s) 386, 482, 491, 786, 851, 1330
BspCNI CTCAG 7 cut(s) 67, 103, 511, 655, 1057, 1306, 1345
BspDI ATCGAT 1 cut(s) 913
BspLI GGNNCC 3 cut(s) 6, 437, 463
BspMAI CTGCAG 1 cut(s) 1159
BspPI GGATC 2 cut(s) 423, 1243
BspQI GCTCTTC 2 cut(s) 201, 990
BsrDI GCAATG 2 cut(s) 595, 1248
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 7 cut(s) 45, 312, 376, 465, 486, 814, 1104
BssMI GATC 5 cut(s) 415, 978, 1024, 1147, 1235
BssT1I CCWWGG 5 cut(s) 45, 312, 486, 814, 1104
Bst2UI CCWGG 3 cut(s) 377, 413, 493
Bst4CI ACNGT 1 cut(s) 1188
Bst6I CTCTTC 4 cut(s) 201, 828, 951, 990
BstC8I GCNNGC 7 cut(s) 243, 247, 504, 508, 770, 774, 1311
BstDEI CTNAG 9 cut(s) 56, 75, 90, 498, 642, 693, 1044, 1314, 1332
BstDSI CCRYGG 4 cut(s) 45, 312, 486, 1104
BstEII GGTNACC 1 cut(s) 395
BstF5I GGATG 1 cut(s) 1125
BstH2I RGCGCY 2 cut(s) 769, 973
BstHHI GCGC 5 cut(s) 321, 512, 768, 972, 1111
BstKTI GATC 5 cut(s) 418, 981, 1027, 1150, 1238
BstMAI GTCTC 4 cut(s) 84, 300, 335, 603
BstMBI GATC 5 cut(s) 415, 978, 1024, 1147, 1235
BstNI CCWGG 3 cut(s) 377, 413, 493
BstPI GGTNACC 1 cut(s) 395
BstSCI CCNGG 3 cut(s) 375, 411, 491
BstSFI CTRYAG 1 cut(s) 1155
BstX2I RGATCY 2 cut(s) 415, 978
BstYI RGATCY 2 cut(s) 415, 978
Bsu15I ATCGAT 1 cut(s) 913
BsuRI GGCC 6 cut(s) 386, 482, 491, 786, 851, 1330
BsuTUI ATCGAT 1 cut(s) 913
BtgI CCRYGG 4 cut(s) 45, 312, 486, 1104
BtgZI GCGATG 1 cut(s) 1289
BtsCI GGATG 1 cut(s) 1125
BtsI GCAGTG 1 cut(s) 1060
BtsIMutI CAGTG 3 cut(s) 681, 1052, 1060
Cac8I GCNNGC 7 cut(s) 243, 247, 504, 508, 770, 774, 1311
CfoI GCGC 5 cut(s) 321, 512, 768, 972, 1111
Cfr13I GGNCC 1 cut(s) 60
ClaI ATCGAT 1 cut(s) 913
CseI GACGC 1 cut(s) 352
Csp6I GTAC 1 cut(s) 1336
CviAII CATG 7 cut(s) 46, 313, 487, 1022, 1105, 1131, 1151
CviQI GTAC 1 cut(s) 1336
DdeI CTNAG 9 cut(s) 56, 75, 90, 498, 642, 693, 1044, 1314, 1332
DpnI GATC 5 cut(s) 417, 980, 1026, 1149, 1237
DpnII GATC 5 cut(s) 415, 978, 1024, 1147, 1235
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 4 cut(s) 201, 828, 951, 990
EarI CTCTTC 4 cut(s) 201, 828, 951, 990
Eco130I CCWWGG 5 cut(s) 45, 312, 486, 814, 1104
Eco147I AGGCCT 1 cut(s) 851
Eco24I GRGCYC 2 cut(s) 383, 464
Eco47I GGWCC 1 cut(s) 60
Eco47III AGCGCT 1 cut(s) 971
Eco57I CTGAAG 3 cut(s) 852, 1203, 1212
Eco88I CYCGRG 3 cut(s) 290, 457, 562
Eco91I GGTNACC 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 60
EcoO65I GGTNACC 1 cut(s) 395
EcoRI GAATTC 2 cut(s) 1039, 1137
EcoRII CCWGG 3 cut(s) 375, 411, 491
EcoT14I CCWWGG 5 cut(s) 45, 312, 486, 814, 1104
EcoT38I GRGCYC 2 cut(s) 383, 464
ErhI CCWWGG 5 cut(s) 45, 312, 486, 814, 1104
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 7 cut(s) 49, 316, 490, 1025, 1108, 1134, 1154
FalI AAGNNNNNCTT 2 cut(s) 577, 609
FaqI GGGAC 2 cut(s) 25, 832
FatI CATG 7 cut(s) 45, 312, 486, 1021, 1104, 1130, 1150
FauNDI CATATG 1 cut(s) 1144
FbaI TGATCA 2 cut(s) 1024, 1147
FokI GGATG 1 cut(s) 1112
FriOI GRGCYC 2 cut(s) 383, 464
FspBI CTAG 2 cut(s) 747, 815
GlaI GCGC 5 cut(s) 320, 511, 767, 971, 1110
GsaI CCCAGC 2 cut(s) 798, 1288
HaeII RGCGCY 2 cut(s) 769, 973
HaeIII GGCC 6 cut(s) 386, 482, 491, 786, 851, 1330
HapII CCGG 1 cut(s) 8
HgaI GACGC 1 cut(s) 352
HhaI GCGC 5 cut(s) 321, 512, 768, 972, 1111
Hin1II CATG 7 cut(s) 49, 316, 490, 1025, 1108, 1134, 1154
Hin6I GCGC 5 cut(s) 319, 510, 766, 970, 1109
HinP1I GCGC 5 cut(s) 319, 510, 766, 970, 1109
HpaII CCGG 1 cut(s) 8
HphI GGTGA 2 cut(s) 212, 407
Hpy166II GTNNAC 3 cut(s) 165, 519, 679
Hpy188III TCNNGA 4 cut(s) 562, 656, 904, 986
Hpy8I GTNNAC 3 cut(s) 165, 519, 679
Hpy99I CGWCG 1 cut(s) 358
HpyAV CCTTC 5 cut(s) 37, 94, 191, 655, 1187
HpyCH4III ACNGT 1 cut(s) 1188
HpyCH4V TGCA 5 cut(s) 575, 890, 1050, 1157, 1253
HpyF3I CTNAG 9 cut(s) 56, 75, 90, 498, 642, 693, 1044, 1314, 1332
Hsp92II CATG 7 cut(s) 49, 316, 490, 1025, 1108, 1134, 1154
HspAI GCGC 5 cut(s) 319, 510, 766, 970, 1109
Ksp22I TGATCA 2 cut(s) 1024, 1147
Kzo9I GATC 5 cut(s) 415, 978, 1024, 1147, 1235
LguI GCTCTTC 2 cut(s) 201, 990
LmnI GCTCC 3 cut(s) 10, 124, 467
LweI GCATC 3 cut(s) 760, 891, 1269
MaeI CTAG 2 cut(s) 747, 815
MaeIII GTNAC 7 cut(s) 112, 395, 524, 607, 742, 892, 1012
MalI GATC 5 cut(s) 417, 980, 1026, 1149, 1237
MboI GATC 5 cut(s) 415, 978, 1024, 1147, 1235
MboII GAAGA 5 cut(s) 218, 845, 938, 1007, 1218
MflI RGATCY 2 cut(s) 415, 978
MhlI GDGCHC 2 cut(s) 383, 464
MlsI TGGCCA 1 cut(s) 491
MluCI AATT 8 cut(s) 16, 729, 898, 1039, 1090, 1099, 1116, 1137
MluNI TGGCCA 1 cut(s) 491
MlyI GAGTC 7 cut(s) 80, 86, 302, 344, 470, 490, 545
MmeI TCCRAC 1 cut(s) 1207
Mox20I TGGCCA 1 cut(s) 491
MscI TGGCCA 1 cut(s) 491
MseI TTAA 2 cut(s) 35, 974
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 491
MspA1I CMGCKG 2 cut(s) 110, 1313
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 3 cut(s) 377, 413, 493
MvaI CCWGG 3 cut(s) 377, 413, 493
NcoI CCATGG 4 cut(s) 45, 312, 486, 1104
NdeI CATATG 1 cut(s) 1144
NdeII GATC 5 cut(s) 415, 978, 1024, 1147, 1235
NlaIII CATG 7 cut(s) 49, 316, 490, 1025, 1108, 1134, 1154
NlaIV GGNNCC 3 cut(s) 6, 437, 463
NmeAIII GCCGAG 3 cut(s) 362, 458, 538
NmuCI GTSAC 4 cut(s) 395, 524, 607, 1012
PaeR7I CTCGAG 2 cut(s) 290, 562
PceI AGGCCT 1 cut(s) 851
PciSI GCTCTTC 2 cut(s) 201, 990
PcsI WCGNNNNNNNCGW 3 cut(s) 350, 510, 536
PfeI GAWTC 6 cut(s) 236, 280, 652, 910, 989, 1223
PflMI CCANNNNNTGG 1 cut(s) 162
PleI GAGTC 7 cut(s) 79, 85, 302, 344, 470, 490, 544
PpsI GAGTC 7 cut(s) 79, 85, 302, 344, 470, 490, 544
PpuMI RGGWCCY 1 cut(s) 60
PsiI TTATAA 1 cut(s) 1200
Psp5II RGGWCCY 1 cut(s) 60
Psp6I CCWGG 3 cut(s) 375, 411, 491
PspEI GGTNACC 1 cut(s) 395
PspFI CCCAGC 2 cut(s) 794, 1284
PspGI CCWGG 3 cut(s) 375, 411, 491
PspN4I GGNNCC 3 cut(s) 6, 437, 463
PspPI GGNCC 1 cut(s) 60
PspPPI RGGWCCY 1 cut(s) 60
PspXI VCTCGAGB 1 cut(s) 290
PstI CTGCAG 1 cut(s) 1159
PsuI RGATCY 2 cut(s) 415, 978
PvuII CAGCTG 1 cut(s) 1313
RsaI GTAC 1 cut(s) 1337
RsaNI GTAC 1 cut(s) 1336
RseI CAYNNNNRTG 1 cut(s) 50
SapI GCTCTTC 2 cut(s) 201, 990
SaqAI TTAA 2 cut(s) 35, 974
Sau3AI GATC 5 cut(s) 415, 978, 1024, 1147, 1235
Sau96I GGNCC 1 cut(s) 60
SchI GAGTC 7 cut(s) 80, 86, 302, 344, 470, 490, 545
ScrFI CCNGG 3 cut(s) 377, 413, 493
SduI GDGCHC 2 cut(s) 383, 464
SfaNI GCATC 3 cut(s) 760, 891, 1269
SfcI CTRYAG 1 cut(s) 1155
SfiI GGCCNNNNNGGCC 1 cut(s) 488
Sfr274I CTCGAG 2 cut(s) 290, 562
SinI GGWCC 1 cut(s) 60
SlaI CTCGAG 2 cut(s) 290, 562
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 3 cut(s) 290, 419, 562
SmoI CTYRAG 3 cut(s) 290, 419, 562
Sse9I AATT 8 cut(s) 16, 729, 898, 1039, 1090, 1099, 1116, 1137
SseBI AGGCCT 1 cut(s) 851
SsiI CCGC 3 cut(s) 105, 108, 674
SspMI CTAG 2 cut(s) 747, 815
StuI AGGCCT 1 cut(s) 851
StyD4I CCNGG 3 cut(s) 375, 411, 491
StyI CCWWGG 5 cut(s) 45, 312, 486, 814, 1104
TaaI ACNGT 1 cut(s) 1188
TaqI TCGA 9 cut(s) 141, 255, 291, 471, 539, 563, 650, 903, 913
TasI AATT 8 cut(s) 16, 729, 898, 1039, 1090, 1099, 1116, 1137
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 6 cut(s) 236, 280, 652, 910, 989, 1223
Tru1I TTAA 2 cut(s) 35, 974
Tru9I TTAA 2 cut(s) 35, 974
TscAI CASTG 3 cut(s) 688, 1052, 1060
TseFI GTSAC 4 cut(s) 395, 524, 607, 1012
Tsp45I GTSAC 4 cut(s) 395, 524, 607, 1012
TspDTI ATGAA 3 cut(s) 241, 923, 1341
TspGWI ACGGA 2 cut(s) 209, 353
TspRI CASTG 3 cut(s) 688, 1052, 1060
Van91I CCANNNNNTGG 1 cut(s) 162
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 3 cut(s) 898, 1039, 1137
XhoI CTCGAG 2 cut(s) 290, 562
XmaJI CCTAGG 1 cut(s) 814
XspI CTAG 2 cut(s) 747, 815
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.