Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8195526.1

Orthogroup ID

OG0001864

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 258

Gene Structure 258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8195526.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

tccatggccaggactcagctcgcttgcgccgagtttacgggtcactcggttgagtcgattgggaacgagttgggtttctcgagctgtggtgcaacgaacacgagcaatgctttgtctcttggggtcactaatacgaatgctaatactcagacctcgaatcgtgaaaaggctgttgttgcggtggacactgatagcgctaagaaaatatctgatacttttgggcagaggacttcaatttacagaggagttactaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

85

Amino Acids

8.9

Weight (kDa)

7.79

Isoelectric Point (pI)

4.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G65510 AT5G65510 AT5G65510 AT5G65510
fragaria_vesca	FvH4_1g19530
malus_domestica	MD01G1040700.v1.1 MD15G1310900.v1.1
prunus_persica	Prupe.6G142500_v2.0.a1 Prupe.6G203000_v2.0.a1
pyrus_communis	pycom01g06820 pycom15g27450
rosa_chinensis	RchiOBHm_Chr2g0111031 RchiOBHm_Chr4g0405741
rosa_laevigata	RLG00000012851 RLG00000017859 RLG00000020876
rosa_multiflora	Rmu_co8195526.1_g000001 Rmu_sc0000041.1_g000014 Rmu_sc0003994.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132730 Rroxscaffold_5G00366230
rosa_rugosa	Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700
rosa_samantha	Rh2AG222800 Rh2AG222900 Rh2BG234800 Rh2CG226300 Rh2DG230600 Rh2DG230700 Rh2DG399700 Rh4BG037900 Rh4CG141400 Rh6BG125200 Rh6CG051000 Rh7CG223000
rosa_wichuraiana	Rw2G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	6
AfeI	AGCGCT	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	234
AjnI	CCWGG	1 cut(s)	8
AluBI	AGCT	2 cut(s)	19, 84
AluI	AGCT	2 cut(s)	19, 84
Alw26I	GTCTC	1 cut(s)	120
Ama87I	CYCGRG	1 cut(s)	79
Aor51HI	AGCGCT	1 cut(s)	196
AoxI	GGCC	1 cut(s)	6
AspLEI	GCGC	2 cut(s)	29, 197
AvaI	CYCGRG	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	8
BauI	CACGAG	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	10
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	3
Bsc4I	CCNNNNNNNGG	1 cut(s)	9
Bse3DI	GCAATG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	10
BseDI	CCNNGG	1 cut(s)	3
BseLI	CCNNNNNNNGG	1 cut(s)	9
BseMI	GCAATG	1 cut(s)	112
BseMII	CTCAG	2 cut(s)	29, 161
BseRI	GAGGAG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	9
BsmAI	GTCTC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	79
Bsp19I	CCATGG	1 cut(s)	3
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	28, 160
BsrDI	GCAATG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	3
BssSI	CACGAG	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	3
Bst2BI	CACGAG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	21, 25
BstDEI	CTNAG	3 cut(s)	15, 147, 198
BstDSI	CCRYGG	1 cut(s)	3
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	2 cut(s)	29, 197
BstMAI	GTCTC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	3
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	21, 25
CfoI	GCGC	2 cut(s)	29, 197
CviAII	CATG	1 cut(s)	4
CviJI	RGCY	4 cut(s)	8, 19, 84, 170
CviKI_1	RGCY	4 cut(s)	8, 19, 84, 170
DdeI	CTNAG	3 cut(s)	15, 147, 198
EaeI	YGGCCR	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	3
Eco47III	AGCGCT	1 cut(s)	196
Eco88I	CYCGRG	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	3
ErhI	CCWWGG	1 cut(s)	3
FaeI	CATG	1 cut(s)	7
FaiI	YATR	1 cut(s)	5
FatI	CATG	1 cut(s)	3
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	2 cut(s)	28, 196
HaeII	RGCGCY	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	8
HhaI	GCGC	2 cut(s)	29, 197
Hin1II	CATG	1 cut(s)	7
Hin6I	GCGC	2 cut(s)	27, 195
HinP1I	GCGC	2 cut(s)	27, 195
HinfI	GANTC	3 cut(s)	13, 53, 157
Hpy166II	GTNNAC	2 cut(s)	36, 184
Hpy188I	TCNGA	2 cut(s)	150, 211
Hpy188III	TCNNGA	2 cut(s)	79, 161
Hpy8I	GTNNAC	2 cut(s)	36, 184
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	3 cut(s)	15, 147, 198
Hsp92II	CATG	1 cut(s)	7
HspAI	GCGC	2 cut(s)	27, 195
LpnPI	CCDG	1 cut(s)	22
MaeI	CTAG	1 cut(s)	252
MaeIII	GTNAC	3 cut(s)	41, 124, 247
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	1 cut(s)	234
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	2 cut(s)	7, 62
MnlI	CCTC	3 cut(s)	163, 219, 236
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
Msp20I	TGGCCA	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	142
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	3
NlaIII	CATG	1 cut(s)	7
NmeAIII	GCCGAG	1 cut(s)	55
NmuCI	GTSAC	2 cut(s)	41, 124
PaeR7I	CTCGAG	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 53
PctI	GAATGC	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	157
PleI	GAGTC	2 cut(s)	7, 61
PpsI	GAGTC	2 cut(s)	7, 61
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
SchI	GAGTC	2 cut(s)	7, 62
ScrFI	CCNGG	1 cut(s)	10
SetI	ASST	4 cut(s)	21, 86, 155, 257
Sfr274I	CTCGAG	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	79
SmoI	CTYRAG	1 cut(s)	79
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	3
TaqI	TCGA	3 cut(s)	56, 80, 155
TasI	AATT	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	157
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	2 cut(s)	41, 124
Tsp45I	GTSAC	2 cut(s)	41, 124
TspRI	CASTG	1 cut(s)	193
XhoI	CTCGAG	1 cut(s)	79
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.