Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001864

Physical Location & Seq

Genomic Coordinates Reverse (-)

19513132 .. 19513572

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG125200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCCATGTCAGATCTTGTGGGCCCCACCTATCAGGCAAAATTCCAAAATTGCCCCGCCTCCGAGTCTGAGTCTCTCTTCGCTCAGGCTTACTATACCTCCGCTGTTATTGCTCCTTCTCCTCATTACTACCTCTGAAGTGTTCTACACAGAAGGTGATGAAAACCACCAAACCAAACAGACCGACTCCGATTCGCTTGCGAGCTTCATCGACCCACAAACTCAGAACCAGCCGATTCCCAAGCTAGAGGACTTTCTCGACAACTCGGAGACGCAGGACTTGTCGCTGACCCAAATCTACGACCAGGGCTCGGCCTACTTTGGTGACCACCACCAGAACCAGGATCTCAAGGTTATTACTGGGTTCCAAGCCTTTTCGGCTAACTCGGGCTCCGAGGTGGAGGACTCGGCATCCATGGCCAACTCAGCTCGCTTGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

146

Amino Acids

16.16

Weight (kDa)

4.41

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G65510 AT5G65510 AT5G65510 AT5G65510
fragaria_vesca	FvH4_1g19530
malus_domestica	MD01G1040700.v1.1 MD15G1310900.v1.1
prunus_persica	Prupe.6G142500_v2.0.a1 Prupe.6G203000_v2.0.a1
pyrus_communis	pycom01g06820 pycom15g27450
rosa_chinensis	RchiOBHm_Chr2g0111031 RchiOBHm_Chr4g0405741
rosa_laevigata	RLG00000012851 RLG00000017859 RLG00000020876
rosa_multiflora	Rmu_co8195526.1_g000001 Rmu_sc0000041.1_g000014 Rmu_sc0003994.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132730 Rroxscaffold_5G00366230
rosa_rugosa	Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700
rosa_samantha	Rh2AG222800 Rh2AG222900 Rh2BG234800 Rh2CG226300 Rh2DG230600 Rh2DG230700 Rh2DG399700 Rh4BG037900 Rh4CG141400 Rh6BG125200 Rh6CG051000 Rh7CG223000
rosa_wichuraiana	Rw2G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	56, 101
AclWI	GGATC	1 cut(s)	351
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	156
AfiI	CCNNNNNNNGG	2 cut(s)	310, 340
AjnI	CCWGG	2 cut(s)	303, 339
AluBI	AGCT	3 cut(s)	204, 244, 428
AluI	AGCT	3 cut(s)	204, 244, 428
Alw26I	GTCTC	2 cut(s)	77, 263
AlwI	GGATC	1 cut(s)	351
Ama87I	CYCGRG	1 cut(s)	385
AoxI	GGCC	3 cut(s)	21, 312, 417
ApaI	GGGCCC	1 cut(s)	25
ApoI	RAATTY	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	2 cut(s)	21, 22
AsuHPI	GGTGA	2 cut(s)	167, 335
AvaI	CYCGRG	1 cut(s)	385
BaeGI	GKGCMC	1 cut(s)	25
BalI	TGGCCA	1 cut(s)	419
BanII	GRGCYC	3 cut(s)	25, 311, 392
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BciT130I	CCWGG	2 cut(s)	305, 341
BcoDI	GTCTC	2 cut(s)	77, 263
BfaI	CTAG	1 cut(s)	245
BglI	GCCNNNNNGGC	1 cut(s)	377
BglII	AGATCT	1 cut(s)	12
Bme1390I	CCNGG	2 cut(s)	305, 341
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	21, 22
BmiI	GGNNCC	4 cut(s)	23, 24, 365, 391
BmrFI	CCNGG	2 cut(s)	305, 341
BmrI	ACTGGG	1 cut(s)	369
BmsI	GCATC	1 cut(s)	419
BmuI	ACTGGG	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	304, 393, 414
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 112, 374, 404
Bsc4I	CCNNNNNNNGG	2 cut(s)	310, 340
Bse1I	ACTGG	1 cut(s)	364
BseBI	CCWGG	2 cut(s)	305, 341
BseDI	CCNNGG	3 cut(s)	304, 393, 414
BseGI	GGATG	1 cut(s)	410
BseLI	CCNNNNNNNGG	2 cut(s)	310, 340
BseMII	CTCAG	4 cut(s)	59, 97, 236, 438
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	25
BshFI	GGCC	3 cut(s)	23, 314, 419
BsiHKCI	CYCGRG	1 cut(s)	385
BslI	CCNNNNNNNGG	2 cut(s)	310, 340
BsmAI	GTCTC	2 cut(s)	77, 263
BsmBI	CGTCTC	1 cut(s)	263
BsnI	GGCC	3 cut(s)	23, 314, 419
BsoBI	CYCGRG	1 cut(s)	385
Bsp120I	GGGCCC	1 cut(s)	21
Bsp1286I	GDGCHC	3 cut(s)	25, 311, 392
Bsp143I	GATC	2 cut(s)	12, 343
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	2 cut(s)	56, 101
BspANI	GGCC	3 cut(s)	23, 314, 419
BspCNI	CTCAG	4 cut(s)	60, 96, 235, 437
BspLI	GGNNCC	4 cut(s)	23, 24, 365, 391
BspPI	GGATC	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	3 cut(s)	304, 393, 414
BssMI	GATC	2 cut(s)	12, 343
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	305, 341
Bst6I	CTCTTC	1 cut(s)	82
BstC8I	GCNNGC	4 cut(s)	198, 202, 430, 434
BstDEI	CTNAG	4 cut(s)	68, 83, 222, 424
BstDSI	CCRYGG	1 cut(s)	414
BstEII	GGTNACC	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	410
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	2 cut(s)	15, 346
BstMAI	GTCTC	2 cut(s)	77, 263
BstMBI	GATC	2 cut(s)	12, 343
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 377, 416, 425
BstNI	CCWGG	2 cut(s)	305, 341
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	2 cut(s)	303, 339
BstSLI	GKGCMC	1 cut(s)	25
BstX2I	RGATCY	2 cut(s)	12, 343
BstYI	RGATCY	2 cut(s)	12, 343
BsuRI	GGCC	3 cut(s)	23, 314, 419
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	410
Cac8I	GCNNGC	4 cut(s)	198, 202, 430, 434
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	21, 22
CseI	GACGC	1 cut(s)	280
CviAII	CATG	2 cut(s)	6, 415
DdeI	CTNAG	4 cut(s)	68, 83, 222, 424
DpnI	GATC	2 cut(s)	14, 345
DpnII	GATC	2 cut(s)	12, 343
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	3 cut(s)	25, 311, 392
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	385
Eco91I	GGTNACC	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	22
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	303, 339
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	3 cut(s)	25, 311, 392
ErhI	CCWWGG	1 cut(s)	414
Esp3I	CGTCTC	1 cut(s)	263
FaeI	CATG	2 cut(s)	9, 418
FaiI	YATR	3 cut(s)	7, 95, 416
FatI	CATG	2 cut(s)	5, 414
FauI	CCCGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	397
FriOI	GRGCYC	3 cut(s)	25, 311, 392
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	437
HaeIII	GGCC	3 cut(s)	23, 314, 419
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	2 cut(s)	9, 418
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HinfI	GANTC	6 cut(s)	64, 70, 185, 191, 235, 404
HphI	GGTGA	2 cut(s)	167, 335
Hpy188I	TCNGA	8 cut(s)	12, 63, 69, 136, 190, 225, 268, 394
Hpy188III	TCNNGA	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	125, 146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 377, 416, 425
HpyF3I	CTNAG	4 cut(s)	68, 83, 222, 424
Hsp92II	CATG	2 cut(s)	9, 418
HspAI	GCGC	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	12, 343
LmnI	GCTCC	2 cut(s)	117, 395
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	2 cut(s)	14, 345
MboI	GATC	2 cut(s)	12, 343
MboII	GAAGA	1 cut(s)	69
MflI	RGATCY	2 cut(s)	12, 343
MhlI	GDGCHC	3 cut(s)	25, 311, 392
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	2 cut(s)	40, 48
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	4 cut(s)	73, 79, 179, 398
MnlI	CCTC	7 cut(s)	69, 108, 131, 142, 241, 388, 394
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
Msp20I	TGGCCA	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	103
MspR9I	CCNGG	2 cut(s)	305, 341
MvaI	CCWGG	2 cut(s)	305, 341
MwoI	GCNNNNNNNGC	4 cut(s)	109, 377, 416, 425
NcoI	CCATGG	1 cut(s)	414
NdeII	GATC	2 cut(s)	12, 343
NlaIII	CATG	2 cut(s)	9, 418
NlaIV	GGNNCC	4 cut(s)	23, 24, 365, 391
NmeAIII	GCCGAG	2 cut(s)	290, 386
NmuCI	GTSAC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	191, 235
PleI	GAGTC	4 cut(s)	72, 78, 179, 398
PpsI	GAGTC	4 cut(s)	72, 78, 179, 398
Psp6I	CCWGG	2 cut(s)	303, 339
PspEI	GGTNACC	1 cut(s)	323
PspGI	CCWGG	2 cut(s)	303, 339
PspN4I	GGNNCC	4 cut(s)	23, 24, 365, 391
PspOMI	GGGCCC	1 cut(s)	21
PspPI	GGNCC	2 cut(s)	21, 22
PsuI	RGATCY	2 cut(s)	12, 343
Sau3AI	GATC	2 cut(s)	12, 343
Sau96I	GGNCC	2 cut(s)	21, 22
SchI	GAGTC	4 cut(s)	73, 79, 179, 398
ScrFI	CCNGG	2 cut(s)	305, 341
SduI	GDGCHC	3 cut(s)	25, 311, 392
SetI	ASST	9 cut(s)	31, 100, 134, 157, 206, 246, 354, 399, 430
SfaNI	GCATC	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
Sse9I	AATT	2 cut(s)	40, 48
SsiI	CCGC	2 cut(s)	56, 101
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	303, 339
StyI	CCWWGG	1 cut(s)	414
TaqI	TCGA	2 cut(s)	210, 258
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	40, 48
TfiI	GAWTC	2 cut(s)	191, 235
TseFI	GTSAC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	174, 196
XapI	RAATTY	1 cut(s)	40
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.