Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001864

Physical Location & Seq

Genomic Coordinates Reverse (-)

23583235 .. 23584655

Gene Structure 1421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG222900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCTCCGGCGACTAATTGGCTATCCTTCTCCTTAATGTCCCCCATGGAAATGCTAAGGTCCTCCTCCGAGTCTGAGTCTCCCTTCGCTCAGGCTTACGACACCGCCGCTGTTACTGCTCCCTCTCCTCATTACTACCTCGACAACTTCTACGCCAACGGGTGGACGAACCCGAAGTCCGAAGTGTTCTACACGGAAGGTGAGGAAGACCAGCAAACCAAACAGACCCACTCCGATTCGCTTGCGAGCTTCATCGACCCACAAACCCAGAACCAGCAGCCGATTCCCAAGCTCGAGGACTTTCTCGGAGACTCCATGGTGCGCTACGCCGACAGCCAAACGGAGACGCAGGACTCGTCGCTGACCCAAATCTACGACCAGGGCTCGGCCTACTTTGGTGACCACCACCAGAACCAGGATCTCAAGGCGATTACTGGGTTCCAAGCCTTTTCGGCTAACTCGGGCTCCGAGGTCGAGGACTCGGCCTCCATGGCCAGGACTCAGCTCGCTTGCGCCGAGTTTACGGGTCACTCGGTTGAGTCGATTGGGAACGAGTTGGGTTTCTCGAGCTGTGGTGCAACGAACACAAGCAATGCTTTGTCTCTTGGGGTCACTAATACGAATACTAACACTCAGACCTCGAATCGTGAAAAGGCTATTGTTGCGGTGGACACTGATAGCACTAAGAAAATATCTGATACTTTTGGGCAGAGGACTTCAATTTACAGAGGAGTTACTAGACATCGTTGGACGGGTAGATATGAAGCGCATCTCTGGGATAACAGCTGTAGAAGAGAGGGTCAGGCCAGGAAAGGACGTCAAGGTCCCATTTCTCTCTCTCCCTCTCAAATCTTGCATTATTCATTTTCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

291

Amino Acids

32.16

Weight (kDa)

4.94

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G65510 AT5G65510 AT5G65510 AT5G65510
fragaria_vesca	FvH4_1g19530
malus_domestica	MD01G1040700.v1.1 MD15G1310900.v1.1
prunus_persica	Prupe.6G142500_v2.0.a1 Prupe.6G203000_v2.0.a1
pyrus_communis	pycom01g06820 pycom15g27450
rosa_chinensis	RchiOBHm_Chr2g0111031 RchiOBHm_Chr4g0405741
rosa_laevigata	RLG00000012851 RLG00000017859 RLG00000020876
rosa_multiflora	Rmu_co8195526.1_g000001 Rmu_sc0000041.1_g000014 Rmu_sc0003994.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132730 Rroxscaffold_5G00366230
rosa_rugosa	Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700
rosa_samantha	Rh2AG222800 Rh2AG222900 Rh2BG234800 Rh2CG226300 Rh2DG230600 Rh2DG230700 Rh2DG399700 Rh4BG037900 Rh4CG141400 Rh6BG125200 Rh6CG051000 Rh7CG223000
rosa_wichuraiana	Rw2G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	822
AatII	GACGTC	1 cut(s)	820
AccB7I	CCANNNNNTGG	1 cut(s)	162
AciI	CCGC	3 cut(s)	105, 108, 665
AclWI	GGATC	1 cut(s)	426
AcoI	YGGCCR	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	817
AfiI	CCNNNNNNNGG	4 cut(s)	162, 385, 415, 495
AgsI	TTSAA	1 cut(s)	720
AjnI	CCWGG	4 cut(s)	378, 414, 494, 806
AloI	GAACNNNNNNTCC	2 cut(s)	161, 193
AluBI	AGCT	5 cut(s)	249, 292, 505, 570, 786
AluI	AGCT	5 cut(s)	249, 292, 505, 570, 786
Alw26I	GTCTC	4 cut(s)	84, 303, 338, 606
AlwI	GGATC	1 cut(s)	426
Ama87I	CYCGRG	3 cut(s)	293, 460, 565
AoxI	GGCC	4 cut(s)	387, 483, 492, 804
ApeKI	GCWGC	1 cut(s)	277
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AspLEI	GCGC	3 cut(s)	324, 515, 769
AspS9I	GGNCC	2 cut(s)	60, 824
AsuHPI	GGTGA	2 cut(s)	212, 410
AvaI	CYCGRG	3 cut(s)	293, 460, 565
AvaII	GGWCC	2 cut(s)	60, 824
BalI	TGGCCA	1 cut(s)	494
BanII	GRGCYC	2 cut(s)	386, 467
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	4 cut(s)	380, 416, 496, 808
BcoDI	GTCTC	4 cut(s)	84, 303, 338, 606
BfaI	CTAG	1 cut(s)	738
BfmI	CTRYAG	1 cut(s)	787
BglI	GCCNNNNNGGC	2 cut(s)	452, 491
BisI	GCNGC	2 cut(s)	108, 278
BlsI	GCNGC	2 cut(s)	109, 279
Bme1390I	CCNGG	4 cut(s)	380, 416, 496, 808
Bme18I	GGWCC	2 cut(s)	60, 824
BmeT110I	CYCGRG	3 cut(s)	293, 460, 565
BmgT120I	GGNCC	2 cut(s)	60, 824
BmiI	GGNNCC	4 cut(s)	6, 440, 466, 826
BmrFI	CCNGG	4 cut(s)	380, 416, 496, 808
BmrI	ACTGGG	1 cut(s)	444
BmsI	GCATC	1 cut(s)	778
BmuI	ACTGGG	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	213
Bpu10I	CCTNAGC	2 cut(s)	56, 90
BpuEI	CTTGAG	1 cut(s)	407
BsaHI	GRCGYC	1 cut(s)	817
BsaJI	CCNNGG	5 cut(s)	45, 315, 379, 468, 489
BsaXI	ACNNNNNCTCC	4 cut(s)	449, 470, 479, 500
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 385, 415, 495
Bse1I	ACTGG	1 cut(s)	439
Bse3DI	GCAATG	1 cut(s)	598
BseBI	CCWGG	4 cut(s)	380, 416, 496, 808
BseDI	CCNNGG	5 cut(s)	45, 315, 379, 468, 489
BseLI	CCNNNNNNNGG	4 cut(s)	162, 385, 415, 495
BseMI	GCAATG	1 cut(s)	598
BseMII	CTCAG	4 cut(s)	66, 104, 515, 647
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	3 cut(s)	55, 117, 744
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	4 cut(s)	389, 485, 494, 806
BsiHKCI	CYCGRG	3 cut(s)	293, 460, 565
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	2 cut(s)	25, 810
BslI	CCNNNNNNNGG	4 cut(s)	162, 385, 415, 495
BsmAI	GTCTC	4 cut(s)	84, 303, 338, 606
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	2 cut(s)	25, 810
BsnI	GGCC	4 cut(s)	389, 485, 494, 806
BsoBI	CYCGRG	3 cut(s)	293, 460, 565
Bsp1286I	GDGCHC	2 cut(s)	386, 467
Bsp143I	GATC	1 cut(s)	418
Bsp19I	CCATGG	3 cut(s)	45, 315, 489
BspACI	CCGC	3 cut(s)	105, 108, 665
BspANI	GGCC	4 cut(s)	389, 485, 494, 806
BspCNI	CTCAG	4 cut(s)	67, 103, 514, 646
BspLI	GGNNCC	4 cut(s)	6, 440, 466, 826
BspPI	GGATC	1 cut(s)	426
BsrDI	GCAATG	1 cut(s)	598
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	5 cut(s)	45, 315, 379, 468, 489
BssMI	GATC	1 cut(s)	418
BssNI	GRCGYC	1 cut(s)	817
BssT1I	CCWWGG	3 cut(s)	45, 315, 489
Bst2UI	CCWGG	4 cut(s)	380, 416, 496, 808
Bst6I	CTCTTC	1 cut(s)	787
BstACI	GRCGYC	1 cut(s)	817
BstC8I	GCNNGC	4 cut(s)	243, 247, 507, 511
BstDEI	CTNAG	6 cut(s)	56, 75, 90, 501, 633, 684
BstDSI	CCRYGG	3 cut(s)	45, 315, 489
BstEII	GGTNACC	1 cut(s)	398
BstHHI	GCGC	3 cut(s)	324, 515, 769
BstKTI	GATC	1 cut(s)	421
BstMAI	GTCTC	4 cut(s)	84, 303, 338, 606
BstMBI	GATC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 452, 491, 662
BstNI	CCWGG	4 cut(s)	380, 416, 496, 808
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	4 cut(s)	378, 414, 494, 806
BstSFI	CTRYAG	1 cut(s)	787
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuRI	GGCC	4 cut(s)	389, 485, 494, 806
BtgI	CCRYGG	3 cut(s)	45, 315, 489
BtsIMutI	CAGTG	1 cut(s)	672
Cac8I	GCNNGC	4 cut(s)	243, 247, 507, 511
CfoI	GCGC	3 cut(s)	324, 515, 769
Cfr13I	GGNCC	2 cut(s)	60, 824
CseI	GACGC	1 cut(s)	355
CviAII	CATG	3 cut(s)	46, 316, 490
DdeI	CTNAG	6 cut(s)	56, 75, 90, 501, 633, 684
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
DrdI	GACNNNNNNGTC	1 cut(s)	822
DseDI	GACNNNNNNGTC	1 cut(s)	822
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	787
EarI	CTCTTC	1 cut(s)	787
Eco130I	CCWWGG	3 cut(s)	45, 315, 489
Eco24I	GRGCYC	2 cut(s)	386, 467
Eco47I	GGWCC	2 cut(s)	60, 824
Eco88I	CYCGRG	3 cut(s)	293, 460, 565
Eco91I	GGTNACC	1 cut(s)	398
EcoO109I	RGGNCCY	2 cut(s)	60, 824
EcoO65I	GGTNACC	1 cut(s)	398
EcoRII	CCWGG	4 cut(s)	378, 414, 494, 806
EcoT14I	CCWWGG	3 cut(s)	45, 315, 489
EcoT38I	GRGCYC	2 cut(s)	386, 467
ErhI	CCWWGG	3 cut(s)	45, 315, 489
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	3 cut(s)	49, 319, 493
FaiI	YATR	4 cut(s)	47, 317, 491, 762
FalI	AAGNNNNNCTT	2 cut(s)	580, 612
FaqI	GGGAC	2 cut(s)	25, 810
FatI	CATG	3 cut(s)	45, 315, 489
Fnu4HI	GCNGC	2 cut(s)	108, 278
FriOI	GRGCYC	2 cut(s)	386, 467
Fsp4HI	GCNGC	2 cut(s)	108, 278
FspBI	CTAG	1 cut(s)	738
GlaI	GCGC	3 cut(s)	323, 514, 768
GluI	GCNGC	2 cut(s)	108, 278
HaeIII	GGCC	4 cut(s)	389, 485, 494, 806
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	355
HhaI	GCGC	3 cut(s)	324, 515, 769
Hin1I	GRCGYC	1 cut(s)	817
Hin1II	CATG	3 cut(s)	49, 319, 493
Hin6I	GCGC	3 cut(s)	322, 513, 767
HinP1I	GCGC	3 cut(s)	322, 513, 767
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	2 cut(s)	212, 410
Hpy166II	GTNNAC	3 cut(s)	165, 522, 670
Hpy188I	TCNGA	9 cut(s)	70, 76, 181, 235, 308, 469, 636, 697, 871
Hpy188III	TCNNGA	2 cut(s)	565, 647
Hpy8I	GTNNAC	3 cut(s)	165, 522, 670
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	3 cut(s)	37, 94, 191
HpyCH4IV	ACGT	1 cut(s)	817
HpyCH4V	TGCA	2 cut(s)	578, 856
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 452, 491, 662
HpyF3I	CTNAG	6 cut(s)	56, 75, 90, 501, 633, 684
HpySE526I	ACGT	1 cut(s)	817
Hsp92I	GRCGYC	1 cut(s)	817
Hsp92II	CATG	3 cut(s)	49, 319, 493
HspAI	GCGC	3 cut(s)	322, 513, 767
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	3 cut(s)	10, 124, 470
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	1 cut(s)	738
MaeII	ACGT	1 cut(s)	817
MaeIII	GTNAC	5 cut(s)	112, 398, 527, 610, 733
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	2 cut(s)	218, 804
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	386, 467
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	2 cut(s)	16, 720
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	7 cut(s)	80, 86, 305, 347, 473, 493, 548
MmeI	TCCRAC	1 cut(s)	728
Mox20I	TGGCCA	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	2 cut(s)	110, 786
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	4 cut(s)	380, 416, 496, 808
MvaI	CCWGG	4 cut(s)	380, 416, 496, 808
MwoI	GCNNNNNNNGC	4 cut(s)	116, 452, 491, 662
NcoI	CCATGG	3 cut(s)	45, 315, 489
NdeII	GATC	1 cut(s)	418
NlaIII	CATG	3 cut(s)	49, 319, 493
NlaIV	GGNNCC	4 cut(s)	6, 440, 466, 826
NmeAIII	GCCGAG	3 cut(s)	365, 461, 541
NmuCI	GTSAC	3 cut(s)	398, 527, 610
PaeR7I	CTCGAG	2 cut(s)	293, 565
PcsI	WCGNNNNNNNCGW	3 cut(s)	353, 513, 539
PfeI	GAWTC	3 cut(s)	236, 283, 643
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	109, 279
PleI	GAGTC	7 cut(s)	79, 85, 305, 347, 473, 493, 547
PpsI	GAGTC	7 cut(s)	79, 85, 305, 347, 473, 493, 547
PpuMI	RGGWCCY	2 cut(s)	60, 824
Psp5II	RGGWCCY	2 cut(s)	60, 824
Psp6I	CCWGG	4 cut(s)	378, 414, 494, 806
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	4 cut(s)	378, 414, 494, 806
PspN4I	GGNNCC	4 cut(s)	6, 440, 466, 826
PspPI	GGNCC	2 cut(s)	60, 824
PspPPI	RGGWCCY	2 cut(s)	60, 824
PspXI	VCTCGAGB	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	786
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	2 cut(s)	108, 278
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	2 cut(s)	60, 824
SchI	GAGTC	7 cut(s)	80, 86, 305, 347, 473, 493, 548
ScrFI	CCNGG	4 cut(s)	380, 416, 496, 808
SduI	GDGCHC	2 cut(s)	386, 467
SfaNI	GCATC	1 cut(s)	778
SfcI	CTRYAG	1 cut(s)	787
SfiI	GGCCNNNNNGGCC	1 cut(s)	491
Sfr274I	CTCGAG	2 cut(s)	293, 565
SinI	GGWCC	2 cut(s)	60, 824
SlaI	CTCGAG	2 cut(s)	293, 565
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	3 cut(s)	293, 422, 565
SmoI	CTYRAG	3 cut(s)	293, 422, 565
Sse9I	AATT	2 cut(s)	16, 720
SsiI	CCGC	3 cut(s)	105, 108, 665
SspMI	CTAG	1 cut(s)	738
StyD4I	CCNGG	4 cut(s)	378, 414, 494, 806
StyI	CCWWGG	3 cut(s)	45, 315, 489
TaiI	ACGT	1 cut(s)	820
TaqI	TCGA	7 cut(s)	141, 255, 294, 474, 542, 566, 641
TasI	AATT	2 cut(s)	16, 720
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	3 cut(s)	236, 283, 643
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	679
TseFI	GTSAC	3 cut(s)	398, 527, 610
TseI	GCWGC	1 cut(s)	277
Tsp45I	GTSAC	3 cut(s)	398, 527, 610
TspDTI	ATGAA	3 cut(s)	241, 777, 852
TspGWI	ACGGA	2 cut(s)	209, 356
TspRI	CASTG	1 cut(s)	679
Van91I	CCANNNNNTGG	1 cut(s)	162
VpaK11BI	GGWCC	2 cut(s)	60, 824
XhoI	CTCGAG	2 cut(s)	293, 565
XspI	CTAG	1 cut(s)	738
ZraI	GACGTC	1 cut(s)	818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.