Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001864

Physical Location & Seq

Genomic Coordinates Forward (+)

58197178 .. 58197537

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG399700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGTGCGCTACGACAACAGCCAAACAGAGATGCAGGACTCGTTGCTGATCCAAATCTACGACCAGGACTCATCGGCCTACTTTGGTGACCACCACCAAAACCAGGATCTCAAGGCGAATACTGGTTTCCAAGCCTTTTCGGCTAACTCGGGCTCTGAGGTGGAGGACTCGGCATCCATGGCCAGGGATCAGCTCGCTTGCGCCGAGTTTACAGGTCACTCGGTTGAGTCAGATGGGAACGAGTTGGGTTTCTCAAGCTGTGGTGCTACGAACAAAAGCAATACTTTGTCTCTTGGGGTTACTAATGCTAATACTCAGACCTCGAATTGTGAAAAAGGCCATTGTTGCGGTGGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

119

Amino Acids

12.72

Weight (kDa)

4.45

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G65510 AT5G65510 AT5G65510 AT5G65510
fragaria_vesca	FvH4_1g19530
malus_domestica	MD01G1040700.v1.1 MD15G1310900.v1.1
prunus_persica	Prupe.6G142500_v2.0.a1 Prupe.6G203000_v2.0.a1
pyrus_communis	pycom01g06820 pycom15g27450
rosa_chinensis	RchiOBHm_Chr2g0111031 RchiOBHm_Chr4g0405741
rosa_laevigata	RLG00000012851 RLG00000017859 RLG00000020876
rosa_multiflora	Rmu_co8195526.1_g000001 Rmu_sc0000041.1_g000014 Rmu_sc0003994.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132730 Rroxscaffold_5G00366230
rosa_rugosa	Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700
rosa_samantha	Rh2AG222800 Rh2AG222900 Rh2BG234800 Rh2CG226300 Rh2DG230600 Rh2DG230700 Rh2DG399700 Rh4BG037900 Rh4CG141400 Rh6BG125200 Rh6CG051000 Rh7CG223000
rosa_wichuraiana	Rw2G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	3 cut(s)	43, 114, 195
AcoI	YGGCCR	1 cut(s)	180
AfiI	CCNNNNNNNGG	2 cut(s)	103, 183
AjnI	CCWGG	3 cut(s)	63, 102, 182
AluBI	AGCT	2 cut(s)	193, 258
AluI	AGCT	2 cut(s)	193, 258
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	3 cut(s)	43, 114, 195
Ama87I	CYCGRG	1 cut(s)	148
AoxI	GGCC	3 cut(s)	75, 180, 337
AspLEI	GCGC	2 cut(s)	9, 203
AsuHPI	GGTGA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	155
BccI	CCATC	1 cut(s)	227
BciT130I	CCWGG	3 cut(s)	65, 104, 184
BcoDI	GTCTC	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	140
Bme1390I	CCNGG	3 cut(s)	65, 104, 184
BmeT110I	CYCGRG	1 cut(s)	148
BmrFI	CCNGG	3 cut(s)	65, 104, 184
BmsI	GCATC	2 cut(s)	21, 182
BpuEI	CTTGAG	2 cut(s)	95, 238
BsaBI	GATNNNNATC	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	177, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 183
Bse1I	ACTGG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	53
BseBI	CCWGG	3 cut(s)	65, 104, 184
BseDI	CCNNGG	2 cut(s)	177, 183
BseGI	GGATG	1 cut(s)	173
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	2 cut(s)	103, 183
BseMII	CTCAG	2 cut(s)	147, 329
BseNI	ACTGG	1 cut(s)	127
BshFI	GGCC	3 cut(s)	77, 182, 339
BsiHKCI	CYCGRG	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	103, 183
BsmAI	GTCTC	1 cut(s)	294
BsnI	GGCC	3 cut(s)	77, 182, 339
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	48, 106, 187
Bsp19I	CCATGG	1 cut(s)	177
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	3 cut(s)	77, 182, 339
BspCNI	CTCAG	2 cut(s)	148, 328
BspPI	GGATC	3 cut(s)	43, 114, 195
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	2 cut(s)	177, 183
BssMI	GATC	3 cut(s)	48, 106, 187
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	3 cut(s)	65, 104, 184
BstC8I	GCNNGC	2 cut(s)	195, 199
BstDEI	CTNAG	2 cut(s)	156, 315
BstDSI	CCRYGG	1 cut(s)	177
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	9, 203
BstKTI	GATC	3 cut(s)	51, 109, 190
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	3 cut(s)	48, 106, 187
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 179, 345
BstNI	CCWGG	3 cut(s)	65, 104, 184
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	3 cut(s)	63, 102, 182
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	77, 182, 339
BtgI	CCRYGG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	173
Cac8I	GCNNGC	2 cut(s)	195, 199
CfoI	GCGC	2 cut(s)	9, 203
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	9 cut(s)	21, 77, 134, 143, 153, 182, 193, 258, 339
CviKI_1	RGCY	9 cut(s)	21, 77, 134, 143, 153, 182, 193, 258, 339
DdeI	CTNAG	2 cut(s)	156, 315
DpnI	GATC	3 cut(s)	50, 108, 189
DpnII	GATC	3 cut(s)	48, 106, 187
EaeI	YGGCCR	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	148
Eco91I	GGTNACC	1 cut(s)	86
EcoO65I	GGTNACC	1 cut(s)	86
EcoRII	CCWGG	3 cut(s)	63, 102, 182
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	1 cut(s)	181
FaiI	YATR	1 cut(s)	179
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FatI	CATG	1 cut(s)	177
FokI	GGATG	1 cut(s)	160
FriOI	GRGCYC	1 cut(s)	155
GlaI	GCGC	2 cut(s)	8, 202
HaeIII	GGCC	3 cut(s)	77, 182, 339
HhaI	GCGC	2 cut(s)	9, 203
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	2 cut(s)	7, 201
HinP1I	GCGC	2 cut(s)	7, 201
HinfI	GANTC	4 cut(s)	38, 68, 167, 227
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	3 cut(s)	157, 232, 318
Hpy8I	GTNNAC	1 cut(s)	210
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 179, 345
HpyF3I	CTNAG	2 cut(s)	156, 315
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	2 cut(s)	7, 201
Kzo9I	GATC	3 cut(s)	48, 106, 187
LpnPI	CCDG	9 cut(s)	20, 50, 77, 89, 108, 116, 169, 196, 198
LweI	GCATC	2 cut(s)	21, 182
MaeIII	GTNAC	3 cut(s)	86, 215, 298
MalI	GATC	3 cut(s)	50, 108, 189
MboI	GATC	3 cut(s)	48, 106, 187
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	155
MlsI	TGGCCA	1 cut(s)	182
MluCI	AATT	1 cut(s)	325
MluNI	TGGCCA	1 cut(s)	182
MlyI	GAGTC	4 cut(s)	32, 62, 161, 236
MnlI	CCTC	3 cut(s)	151, 157, 331
Mox20I	TGGCCA	1 cut(s)	182
MscI	TGGCCA	1 cut(s)	182
Msp20I	TGGCCA	1 cut(s)	182
MspR9I	CCNGG	3 cut(s)	65, 104, 184
MvaI	CCWGG	3 cut(s)	65, 104, 184
MwoI	GCNNNNNNNGC	3 cut(s)	140, 179, 345
NcoI	CCATGG	1 cut(s)	177
NdeII	GATC	3 cut(s)	48, 106, 187
NlaIII	CATG	1 cut(s)	181
NmeAIII	GCCGAG	2 cut(s)	149, 229
NmuCI	GTSAC	2 cut(s)	86, 215
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PleI	GAGTC	4 cut(s)	32, 62, 161, 235
PpsI	GAGTC	4 cut(s)	32, 62, 161, 235
Psp6I	CCWGG	3 cut(s)	63, 102, 182
PspEI	GGTNACC	1 cut(s)	86
PspGI	CCWGG	3 cut(s)	63, 102, 182
PsuI	RGATCY	1 cut(s)	106
Sau3AI	GATC	3 cut(s)	48, 106, 187
SchI	GAGTC	4 cut(s)	32, 62, 161, 236
ScrFI	CCNGG	3 cut(s)	65, 104, 184
SduI	GDGCHC	1 cut(s)	155
SetI	ASST	5 cut(s)	162, 195, 217, 260, 323
SfaNI	GCATC	2 cut(s)	21, 182
SmlI	CTYRAG	2 cut(s)	110, 253
SmoI	CTYRAG	2 cut(s)	110, 253
Sse9I	AATT	1 cut(s)	325
SsiI	CCGC	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	63, 102, 182
StyI	CCWWGG	1 cut(s)	177
TaqI	TCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	325
TseFI	GTSAC	2 cut(s)	86, 215
Tsp45I	GTSAC	2 cut(s)	86, 215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.