Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001864

Physical Location & Seq

Genomic Coordinates Forward (+)

11541475 .. 11542045

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G142500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGCTCACCATCATCTTCTCCACTCTATGCATCTGTCATGGCTGCTTCAACTCTTGCGTCAATTCAATGAATCATGGCTTCTATTTGAGGGCCCCCAAAGTTGGAGCCCATGGTCGTTGCCTTCCAAGCTCAAGGCCGACACCCAGCAGCAAGATCTCAACGCGATTACTGGGTTTCAAGCCTTTTCGATGAACTTGGGCTCGGAAGTGGAGGACTTGGCGTCCATTGCCTGGACTAGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

82

Amino Acids

9.29

Weight (kDa)

5.55

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G65510 AT5G65510 AT5G65510 AT5G65510
fragaria_vesca	FvH4_1g19530
malus_domestica	MD01G1040700.v1.1 MD15G1310900.v1.1
prunus_persica	Prupe.6G142500_v2.0.a1 Prupe.6G203000_v2.0.a1
pyrus_communis	pycom01g06820 pycom15g27450
rosa_chinensis	RchiOBHm_Chr2g0111031 RchiOBHm_Chr4g0405741
rosa_laevigata	RLG00000012851 RLG00000017859 RLG00000020876
rosa_multiflora	Rmu_co8195526.1_g000001 Rmu_sc0000041.1_g000014 Rmu_sc0003994.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132730 Rroxscaffold_5G00366230
rosa_rugosa	Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700
rosa_samantha	Rh2AG222800 Rh2AG222900 Rh2BG234800 Rh2CG226300 Rh2DG230600 Rh2DG230700 Rh2DG399700 Rh4BG037900 Rh4CG141400 Rh6BG125200 Rh6CG051000 Rh7CG223000
rosa_wichuraiana	Rw2G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	231
AccII	CGCG	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	102, 231
AgsI	TTSAA	3 cut(s)	50, 67, 179
AhdI	GACNNNNNGTC	1 cut(s)	220
AhlI	ACTAGT	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
AoxI	GGCC	2 cut(s)	91, 135
ApaI	GGGCCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	43, 148
AspS9I	GGNCC	2 cut(s)	91, 92
BaeGI	GKGCMC	1 cut(s)	95
BanII	GRGCYC	3 cut(s)	95, 110, 203
BbvI	GCAGC	2 cut(s)	30, 160
BccI	CCATC	1 cut(s)	18
BciT130I	CCWGG	1 cut(s)	232
BcuI	ACTAGT	1 cut(s)	236
BfaI	CTAG	1 cut(s)	237
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	2 cut(s)	44, 149
BlsI	GCNGC	2 cut(s)	45, 150
Bme1390I	CCNGG	1 cut(s)	232
BmeRI	GACNNNNNGTC	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	91, 92
BmiI	GGNNCC	3 cut(s)	93, 94, 107
BmrFI	CCNGG	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	40
BmuI	ACTGGG	1 cut(s)	180
BoxI	GACNNNNGTC	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	102, 231
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	102, 231
BseMI	GCAATG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	175
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	2 cut(s)	30, 160
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	2 cut(s)	93, 137
BslI	CCNNNNNNNGG	2 cut(s)	102, 231
BsnI	GGCC	2 cut(s)	93, 137
Bsp120I	GGGCCC	1 cut(s)	91
Bsp1286I	GDGCHC	3 cut(s)	95, 110, 203
Bsp143I	GATC	1 cut(s)	154
Bsp19I	CCATGG	1 cut(s)	110
BspANI	GGCC	2 cut(s)	93, 137
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	3 cut(s)	93, 94, 107
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	1 cut(s)	154
BssNI	GRCGYC	1 cut(s)	221
BssT1I	CCWWGG	1 cut(s)	110
Bst2UI	CCWGG	1 cut(s)	232
BstACI	GRCGYC	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	110
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 227
BstNI	CCWGG	1 cut(s)	232
BstPAI	GACNNNNGTC	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	95
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	2 cut(s)	30, 160
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuRI	GGCC	2 cut(s)	93, 137
BtgI	CCRYGG	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	91, 92
CseI	GACGC	2 cut(s)	47, 210
CviAII	CATG	3 cut(s)	39, 75, 111
CviJI	RGCY	9 cut(s)	5, 43, 79, 93, 108, 130, 137, 182, 201
CviKI_1	RGCY	9 cut(s)	5, 43, 79, 93, 108, 130, 137, 182, 201
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DriI	GACNNNNNGTC	1 cut(s)	220
Eam1105I	GACNNNNNGTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	110
Eco24I	GRGCYC	3 cut(s)	95, 110, 203
EcoO109I	RGGNCCY	2 cut(s)	91, 92
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	33
EcoT38I	GRGCYC	3 cut(s)	95, 110, 203
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	3 cut(s)	42, 78, 114
FaiI	YATR	4 cut(s)	29, 40, 76, 112
FatI	CATG	3 cut(s)	38, 74, 110
Fnu4HI	GCNGC	2 cut(s)	44, 149
FriOI	GRGCYC	3 cut(s)	95, 110, 203
Fsp4HI	GCNGC	2 cut(s)	44, 149
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	2 cut(s)	44, 149
GsaI	CCCAGC	1 cut(s)	148
HaeIII	GGCC	2 cut(s)	93, 137
HgaI	GACGC	2 cut(s)	47, 210
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	3 cut(s)	42, 78, 114
HinfI	GANTC	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	31
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 227
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	3 cut(s)	42, 78, 114
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	3 cut(s)	156, 158, 217
Lsp1109I	GCAGC	2 cut(s)	30, 160
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	237
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	1 cut(s)	8
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	3 cut(s)	95, 110, 203
MluCI	AATT	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	2 cut(s)	82, 205
Mph1103I	ATGCAT	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	127, 227
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	3 cut(s)	42, 78, 114
NlaIV	GGNNCC	3 cut(s)	93, 94, 107
NsiI	ATGCAT	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	71
PflMI	CCANNNNNTGG	1 cut(s)	231
PkrI	GCNGC	2 cut(s)	45, 150
PshAI	GACNNNNGTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	3 cut(s)	93, 94, 107
PspOMI	GGGCCC	1 cut(s)	91
PspPI	GGNCC	2 cut(s)	91, 92
PsuI	RGATCY	1 cut(s)	154
SatI	GCNGC	2 cut(s)	44, 149
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	2 cut(s)	91, 92
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	3 cut(s)	95, 110, 203
SetI	ASST	1 cut(s)	132
SfaNI	GCATC	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SpeI	ACTAGT	1 cut(s)	236
Sse9I	AATT	1 cut(s)	62
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	110
TaqI	TCGA	1 cut(s)	188
TasI	AATT	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	71
TseI	GCWGC	2 cut(s)	43, 148
TspDTI	ATGAA	2 cut(s)	84, 206
Van91I	CCANNNNNTGG	1 cut(s)	231
XspI	CTAG	1 cut(s)	237
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.