Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001864

Physical Location & Seq

Genomic Coordinates Forward (+)

23143401 .. 23143826

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012851

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTGCGCTATGCCGACAGCCAAAAGGAGACGCAGGACTCATTGCTGATCCAAATCTACGACCAAGACTCGTCGGCCTACTTTGGTGACCACCATCAAAACCAGGATCTCAAGGAGATTACTGGGTTCCAAGCCTTTTCGGCTAACTCGGGCTTCGAGATGGAGGACTCGGCATCCATGACTAGGGATCAGCTCACTTGCGCCGAGTTTACGGGTCACTCGGTTGAGTCGATTGGGAACGAGTTGGGTTTCTCGAGTTGTGGTGCTACGAACAAAAGCAATGCTTTGTCTCTTGGGGTTACTAATGCTAATACTCAAACCTCGAATCTTGAAAAGGCCATTGTTGCGGTGGACATTGATAGCACTAAGAGAATCTCTGATACTTTTGGGCAAAGGACTTCAATTTACAGAGGAGTTACTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

142

Amino Acids

15.42

Weight (kDa)

4.68

Isoelectric Point (pI)

25.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G65510 AT5G65510 AT5G65510 AT5G65510
fragaria_vesca	FvH4_1g19530
malus_domestica	MD01G1040700.v1.1 MD15G1310900.v1.1
prunus_persica	Prupe.6G142500_v2.0.a1 Prupe.6G203000_v2.0.a1
pyrus_communis	pycom01g06820 pycom15g27450
rosa_chinensis	RchiOBHm_Chr2g0111031 RchiOBHm_Chr4g0405741
rosa_laevigata	RLG00000012851 RLG00000017859 RLG00000020876
rosa_multiflora	Rmu_co8195526.1_g000001 Rmu_sc0000041.1_g000014 Rmu_sc0003994.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132730 Rroxscaffold_5G00366230
rosa_rugosa	Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700
rosa_samantha	Rh2AG222800 Rh2AG222900 Rh2BG234800 Rh2CG226300 Rh2DG230600 Rh2DG230700 Rh2DG399700 Rh4BG037900 Rh4CG141400 Rh6BG125200 Rh6CG051000 Rh7CG223000
rosa_wichuraiana	Rw2G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	3 cut(s)	43, 114, 195
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	2 cut(s)	332, 402
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw26I	GTCTC	2 cut(s)	23, 294
AlwI	GGATC	3 cut(s)	43, 114, 195
Ama87I	CYCGRG	2 cut(s)	148, 253
AoxI	GGCC	2 cut(s)	75, 336
AspLEI	GCGC	2 cut(s)	9, 203
AsuHPI	GGTGA	1 cut(s)	98
AvaI	CYCGRG	2 cut(s)	148, 253
BccI	CCATC	2 cut(s)	102, 154
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	2 cut(s)	23, 294
BfaI	CTAG	2 cut(s)	183, 420
BglI	GCCNNNNNGGC	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	104
BmeT110I	CYCGRG	2 cut(s)	148, 253
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	2 cut(s)	41, 286
Bse8I	GATNNNNATC	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	173
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	2 cut(s)	41, 286
BseNI	ACTGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	77, 338
BsiHKCI	CYCGRG	2 cut(s)	148, 253
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	2 cut(s)	23, 294
BsmBI	CGTCTC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	77, 338
BsoBI	CYCGRG	2 cut(s)	148, 253
Bsp143I	GATC	3 cut(s)	48, 106, 187
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	2 cut(s)	77, 338
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	3 cut(s)	43, 114, 195
BsrDI	GCAATG	2 cut(s)	41, 286
BsrI	ACTGG	1 cut(s)	127
BssMI	GATC	3 cut(s)	48, 106, 187
Bst2UI	CCWGG	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	366
BstEII	GGTNACC	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	9, 203
BstKTI	GATC	3 cut(s)	51, 109, 190
BstMAI	GTCTC	2 cut(s)	23, 294
BstMBI	GATC	3 cut(s)	48, 106, 187
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 344
BstNI	CCWGG	1 cut(s)	104
BstPI	GGTNACC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	77, 338
BtsCI	GGATG	1 cut(s)	173
CfoI	GCGC	2 cut(s)	9, 203
CseI	GACGC	1 cut(s)	40
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	7 cut(s)	21, 77, 134, 143, 153, 193, 338
CviKI_1	RGCY	7 cut(s)	21, 77, 134, 143, 153, 193, 338
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	3 cut(s)	50, 108, 189
DpnII	GATC	3 cut(s)	48, 106, 187
Eco88I	CYCGRG	2 cut(s)	148, 253
Eco91I	GGTNACC	1 cut(s)	86
EcoO65I	GGTNACC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	102
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	1 cut(s)	181
FaiI	YATR	2 cut(s)	12, 179
FalI	AAGNNNNNCTT	2 cut(s)	268, 300
FatI	CATG	1 cut(s)	177
FokI	GGATG	1 cut(s)	160
FspBI	CTAG	2 cut(s)	183, 420
GlaI	GCGC	2 cut(s)	8, 202
HaeIII	GGCC	2 cut(s)	77, 338
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	2 cut(s)	9, 203
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	2 cut(s)	7, 201
HinP1I	GCGC	2 cut(s)	7, 201
HinfI	GANTC	6 cut(s)	38, 68, 167, 227, 325, 372
HphI	GGTGA	1 cut(s)	98
Hpy166II	GTNNAC	2 cut(s)	210, 352
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	3 cut(s)	157, 253, 329
Hpy8I	GTNNAC	2 cut(s)	210, 352
Hpy99I	CGWCG	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 344
HpyF3I	CTNAG	1 cut(s)	366
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	2 cut(s)	7, 201
Kzo9I	GATC	3 cut(s)	48, 106, 187
LpnPI	CCDG	4 cut(s)	20, 89, 108, 116
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	2 cut(s)	183, 420
MaeIII	GTNAC	4 cut(s)	86, 215, 298, 415
MalI	GATC	3 cut(s)	50, 108, 189
MboI	GATC	3 cut(s)	48, 106, 187
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	1 cut(s)	402
MlyI	GAGTC	4 cut(s)	32, 62, 161, 236
MnlI	CCTC	3 cut(s)	157, 331, 404
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	140, 344
NdeII	GATC	3 cut(s)	48, 106, 187
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	128
NmeAIII	GCCGAG	2 cut(s)	149, 229
NmuCI	GTSAC	2 cut(s)	86, 215
PaeR7I	CTCGAG	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	325, 372
PleI	GAGTC	4 cut(s)	32, 62, 161, 235
PpsI	GAGTC	4 cut(s)	32, 62, 161, 235
Psp6I	CCWGG	1 cut(s)	102
PspEI	GGTNACC	1 cut(s)	86
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	106
Sau3AI	GATC	3 cut(s)	48, 106, 187
SchI	GAGTC	4 cut(s)	32, 62, 161, 236
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	3 cut(s)	195, 323, 425
SfaNI	GCATC	1 cut(s)	182
Sfr274I	CTCGAG	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	253
SmlI	CTYRAG	2 cut(s)	110, 253
SmoI	CTYRAG	2 cut(s)	110, 253
Sse9I	AATT	1 cut(s)	402
SsiI	CCGC	1 cut(s)	347
SspMI	CTAG	2 cut(s)	183, 420
StyD4I	CCNGG	1 cut(s)	102
TaqI	TCGA	4 cut(s)	156, 230, 254, 323
TasI	AATT	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	325, 372
TseFI	GTSAC	2 cut(s)	86, 215
Tsp45I	GTSAC	2 cut(s)	86, 215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	253
XspI	CTAG	2 cut(s)	183, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.