Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001864

Physical Location & Seq

Genomic Coordinates Reverse (-)

48064958 .. 48066073

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00366230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGTACGCTATGGAGATAGCCAAACGGAGACCCAGAACTCATCGCTGACCCAAATCTACAACCAGGGCTCTACCTACTTTGGAGACCACTACCAGAACCAAGATCTGAAGGCTATTACTGGGTTCCAAGCCTTTTCGGCTAACTCGGGCTCCGATGACGAGGACTCGGCTTCTATGGCCAGGACTCAGTCGCTGGTACCTAGTTTACAGGTCACTTGGTTGAGTCGATTGGGTAAGCTTGGTATTCTAGGTATTCTGGGAAGTCAAAAGAAAGGAAGAACTGAGAAGTCTTGGTATTCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

101

Amino Acids

11.09

Weight (kDa)

6.54

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G65510 AT5G65510 AT5G65510 AT5G65510
fragaria_vesca	FvH4_1g19530
malus_domestica	MD01G1040700.v1.1 MD15G1310900.v1.1
prunus_persica	Prupe.6G142500_v2.0.a1 Prupe.6G203000_v2.0.a1
pyrus_communis	pycom01g06820 pycom15g27450
rosa_chinensis	RchiOBHm_Chr2g0111031 RchiOBHm_Chr4g0405741
rosa_laevigata	RLG00000012851 RLG00000017859 RLG00000020876
rosa_multiflora	Rmu_co8195526.1_g000001 Rmu_sc0000041.1_g000014 Rmu_sc0003994.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132730 Rroxscaffold_5G00366230
rosa_rugosa	Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700
rosa_samantha	Rh2AG222800 Rh2AG222900 Rh2BG234800 Rh2CG226300 Rh2DG230600 Rh2DG230700 Rh2DG399700 Rh4BG037900 Rh4CG141400 Rh6BG125200 Rh6CG051000 Rh7CG223000
rosa_wichuraiana	Rw2G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	196
AccB1I	GGYRCC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	177
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	2 cut(s)	6, 198
AjnI	CCWGG	2 cut(s)	63, 179
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	23, 78
AlwNI	CAGNNNCTG	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	1 cut(s)	177
Asp718I	GGTACC	1 cut(s)	196
AvaI	CYCGRG	1 cut(s)	145
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	196
BanII	GRGCYC	2 cut(s)	71, 152
BciT130I	CCWGG	2 cut(s)	65, 181
BcoDI	GTCTC	2 cut(s)	23, 78
BfaI	CTAG	2 cut(s)	201, 248
BglI	GCCNNNNNGGC	1 cut(s)	137
BglII	AGATCT	1 cut(s)	103
Bme1390I	CCNGG	2 cut(s)	65, 181
BmeT110I	CYCGRG	1 cut(s)	145
BmiI	GGNNCC	3 cut(s)	125, 151, 198
BmrFI	CCNGG	2 cut(s)	65, 181
BmrI	ACTGGG	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	129
BsaI	GGTCTC	2 cut(s)	23, 78
BsaJI	CCNNGG	1 cut(s)	64
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	65, 181
BseDI	CCNNGG	1 cut(s)	64
BseMII	CTCAG	2 cut(s)	200, 273
BseNI	ACTGG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	23, 78
BsnI	GGCC	1 cut(s)	179
Bso31I	GGTCTC	2 cut(s)	23, 78
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	71, 152
Bsp143I	GATC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	2 cut(s)	199, 274
BspLI	GGNNCC	3 cut(s)	125, 151, 198
BspT107I	GGYRCC	1 cut(s)	196
BspTNI	GGTCTC	2 cut(s)	23, 78
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	103
Bst2UI	CCWGG	2 cut(s)	65, 181
BstDEI	CTNAG	2 cut(s)	186, 282
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	2 cut(s)	23, 78
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 176
BstNI	CCWGG	2 cut(s)	65, 181
BstSCI	CCNGG	2 cut(s)	63, 179
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	179
BtgZI	GCGATG	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	5, 197
CviJI	RGCY	9 cut(s)	21, 69, 113, 131, 140, 150, 170, 179, 238
CviKI_1	RGCY	9 cut(s)	21, 69, 113, 131, 140, 150, 170, 179, 238
CviQI	GTAC	2 cut(s)	5, 197
DdeI	CTNAG	2 cut(s)	186, 282
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	177
Eco24I	GRGCYC	2 cut(s)	71, 152
Eco31I	GGTCTC	2 cut(s)	23, 78
Eco57I	CTGAAG	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	63, 179
EcoT38I	GRGCYC	2 cut(s)	71, 152
FaiI	YATR	2 cut(s)	12, 176
FriOI	GRGCYC	2 cut(s)	71, 152
FspBI	CTAG	2 cut(s)	201, 248
HaeIII	GGCC	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	3 cut(s)	164, 184, 223
Hpy166II	GTNNAC	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	108, 154
Hpy8I	GTNNAC	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 176
HpyF3I	CTNAG	2 cut(s)	186, 282
KpnI	GGTACC	1 cut(s)	200
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	155
MaeI	CTAG	2 cut(s)	201, 248
MaeIII	GTNAC	1 cut(s)	211
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	1 cut(s)	288
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	71, 152
MlsI	TGGCCA	1 cut(s)	179
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	3 cut(s)	158, 178, 232
MnlI	CCTC	1 cut(s)	154
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	179
MspR9I	CCNGG	2 cut(s)	65, 181
MvaI	CCWGG	2 cut(s)	65, 181
MwoI	GCNNNNNNNGC	2 cut(s)	137, 176
NdeII	GATC	1 cut(s)	103
NlaIV	GGNNCC	3 cut(s)	125, 151, 198
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	211
PflFI	GACNNNGTC	1 cut(s)	187
PleI	GAGTC	3 cut(s)	158, 178, 231
PpsI	GAGTC	3 cut(s)	158, 178, 231
Psp6I	CCWGG	2 cut(s)	63, 179
PspGI	CCWGG	2 cut(s)	63, 179
PspN4I	GGNNCC	3 cut(s)	125, 151, 198
PstNI	CAGNNNCTG	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	103
PsyI	GACNNNGTC	1 cut(s)	187
RsaI	GTAC	2 cut(s)	6, 198
RsaNI	GTAC	2 cut(s)	5, 197
Sau3AI	GATC	1 cut(s)	103
SchI	GAGTC	3 cut(s)	158, 178, 232
ScrFI	CCNGG	2 cut(s)	65, 181
SduI	GDGCHC	2 cut(s)	71, 152
SetI	ASST	5 cut(s)	77, 202, 213, 240, 253
SspMI	CTAG	2 cut(s)	201, 248
StyD4I	CCNGG	2 cut(s)	63, 179
TaqI	TCGA	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	41
Tth111I	GACNNNGTC	1 cut(s)	187
XspI	CTAG	2 cut(s)	201, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.