Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001864

Physical Location & Seq

Genomic Coordinates Reverse (-)

22889266 .. 22889700

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG230600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAATCGATATGATGTTGAAGCTATTGGCAAGAGTTCTCTTCCTGTTGGTGGTTCAGCGAAGCGCTTAAAGATCTCTCTTGAATCGGAAGAGCAGAAACCATCTGTGACCAACCATGATCAGCAGCAGCAGAATTCTCAGTGCAGCAGTGGCAGCAACAGCAACAACATCAATTTTGCTAATTCCATGGCGCAACCAATTCAGACCATCCCATGTGGAATTCCATATGATCATGCTGCAGCACTTTATCATCACAACCTTCTCCAACAGTTCCAATCTTATAACTACTATGGCACTACTTCGGATTCTTCAGCAGGATCGCACCCTAACATTGCAACAAGTCAGATGACTATGGCGATGATGCCCCAGCAGCAGCAGCAGCAGCAGCCAGCTGAGTTCTTTCTCTGGCCTCAGTACCAAACTCATCATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009791 GO:0009888 GO:0009889 GO:0009956 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010492 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0048364 GO:0048507 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060771 GO:0060772 GO:0060774 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

144

Amino Acids

16.06

Weight (kDa)

6.11

Isoelectric Point (pI)

64.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001864)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G10510 AT5G65510 AT5G65510 AT5G65510 AT5G65510
fragaria_vesca	FvH4_1g19530
malus_domestica	MD01G1040700.v1.1 MD15G1310900.v1.1
prunus_persica	Prupe.6G142500_v2.0.a1 Prupe.6G203000_v2.0.a1
pyrus_communis	pycom01g06820 pycom15g27450
rosa_chinensis	RchiOBHm_Chr2g0111031 RchiOBHm_Chr4g0405741
rosa_laevigata	RLG00000012851 RLG00000017859 RLG00000020876
rosa_multiflora	Rmu_co8195526.1_g000001 Rmu_sc0000041.1_g000014 Rmu_sc0003994.1_g000004
rosa_roxburghii	Rroxscaffold_2G00132730 Rroxscaffold_5G00366230
rosa_rugosa	Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700 Rorug02G0170700
rosa_samantha	Rh2AG222800 Rh2AG222900 Rh2BG234800 Rh2CG226300 Rh2DG230600 Rh2DG230700 Rh2DG399700 Rh4BG037900 Rh4CG141400 Rh6BG125200 Rh6CG051000 Rh7CG223000
rosa_wichuraiana	Rw2G017210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	282
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	2 cut(s)	133, 219
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	1 cut(s)	416
AfeI	AGCGCT	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	20, 83
AluBI	AGCT	2 cut(s)	23, 392
AluI	AGCT	2 cut(s)	23, 392
AlwI	GGATC	1 cut(s)	325
Aor51HI	AGCGCT	1 cut(s)	65
AoxI	GGCC	1 cut(s)	407
ApoI	RAATTY	2 cut(s)	133, 219
AspLEI	GCGC	2 cut(s)	66, 193
BccI	CCATC	2 cut(s)	109, 215
BclI	TGATCA	2 cut(s)	118, 229
BfmI	CTRYAG	1 cut(s)	237
BfoI	RGCGCY	1 cut(s)	67
BglII	AGATCT	1 cut(s)	72
BmsI	GCATC	1 cut(s)	351
Bsa29I	ATCGAT	1 cut(s)	7
BsaJI	CCNNGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	330
BseCI	ATCGAT	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	3 cut(s)	152, 384, 425
BseYI	CCCAGC	1 cut(s)	366
BsgI	GTGCAG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	409
BshVI	ATCGAT	1 cut(s)	7
BslI	CCNNNNNNNGG	1 cut(s)	50
BsnI	GGCC	1 cut(s)	409
Bsp143I	GATC	4 cut(s)	72, 118, 229, 317
Bsp19I	CCATGG	1 cut(s)	186
BspANI	GGCC	1 cut(s)	409
BspCNI	CTCAG	3 cut(s)	151, 385, 424
BspDI	ATCGAT	1 cut(s)	7
BspMAI	CTGCAG	1 cut(s)	241
BspPI	GGATC	1 cut(s)	325
BspQI	GCTCTTC	1 cut(s)	84
BsrDI	GCAATG	1 cut(s)	330
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	4 cut(s)	72, 118, 229, 317
BssT1I	CCWWGG	1 cut(s)	186
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	2 cut(s)	45, 84
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	3 cut(s)	138, 393, 411
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	2 cut(s)	66, 193
BstKTI	GATC	4 cut(s)	75, 121, 232, 320
BstMBI	GATC	4 cut(s)	72, 118, 229, 317
BstMWI	GCNNNNNNNGC	8 cut(s)	150, 153, 159, 370, 376, 379, 382, 385
BstSFI	CTRYAG	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
Bsu15I	ATCGAT	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	409
BsuTUI	ATCGAT	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	2 cut(s)	146, 154
Cac8I	GCNNGC	1 cut(s)	390
CfoI	GCGC	2 cut(s)	66, 193
ClaI	ATCGAT	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	4 cut(s)	116, 187, 213, 233
CviJI	RGCY	4 cut(s)	23, 388, 392, 409
CviKI_1	RGCY	4 cut(s)	23, 388, 392, 409
CviQI	GTAC	1 cut(s)	415
DdeI	CTNAG	3 cut(s)	138, 393, 411
DpnI	GATC	4 cut(s)	74, 120, 231, 319
DpnII	GATC	4 cut(s)	72, 118, 229, 317
Eam1104I	CTCTTC	2 cut(s)	45, 84
EarI	CTCTTC	2 cut(s)	45, 84
Eco130I	CCWWGG	1 cut(s)	186
Eco47III	AGCGCT	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	294
EcoRI	GAATTC	2 cut(s)	133, 219
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	4 cut(s)	119, 190, 216, 236
FatI	CATG	4 cut(s)	115, 186, 212, 232
FauNDI	CATATG	1 cut(s)	226
FbaI	TGATCA	2 cut(s)	118, 229
FokI	GGATG	1 cut(s)	194
GlaI	GCGC	2 cut(s)	65, 192
GsaI	CCCAGC	1 cut(s)	370
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	1 cut(s)	409
HhaI	GCGC	2 cut(s)	66, 193
Hin1II	CATG	4 cut(s)	119, 190, 216, 236
Hin6I	GCGC	2 cut(s)	64, 191
HinP1I	GCGC	2 cut(s)	64, 191
HinfI	GANTC	3 cut(s)	4, 83, 305
Hpy188I	TCNGA	4 cut(s)	88, 204, 304, 345
Hpy188III	TCNNGA	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	144, 239, 335
HpyF10VI	GCNNNNNNNGC	8 cut(s)	150, 153, 159, 370, 376, 379, 382, 385
HpyF3I	CTNAG	3 cut(s)	138, 393, 411
Hsp92II	CATG	4 cut(s)	119, 190, 216, 236
HspAI	GCGC	2 cut(s)	64, 191
Ksp22I	TGATCA	2 cut(s)	118, 229
Kzo9I	GATC	4 cut(s)	72, 118, 229, 317
LguI	GCTCTTC	1 cut(s)	84
LpnPI	CCDG	5 cut(s)	57, 300, 380, 391, 402
LweI	GCATC	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	4 cut(s)	74, 120, 231, 319
MboI	GATC	4 cut(s)	72, 118, 229, 317
MboII	GAAGA	3 cut(s)	32, 101, 300
MflI	RGATCY	1 cut(s)	72
MluCI	AATT	5 cut(s)	133, 172, 181, 198, 219
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	1 cut(s)	420
MseI	TTAA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	392
MwoI	GCNNNNNNNGC	8 cut(s)	150, 153, 159, 370, 376, 379, 382, 385
NcoI	CCATGG	1 cut(s)	186
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	4 cut(s)	72, 118, 229, 317
NlaIII	CATG	4 cut(s)	119, 190, 216, 236
NmuCI	GTSAC	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	84
PfeI	GAWTC	3 cut(s)	4, 83, 305
PsiI	TTATAA	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	366
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	68
Sau3AI	GATC	4 cut(s)	72, 118, 229, 317
SetI	ASST	3 cut(s)	25, 261, 394
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	1 cut(s)	237
Sse9I	AATT	5 cut(s)	133, 172, 181, 198, 219
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	7
TasI	AATT	5 cut(s)	133, 172, 181, 198, 219
TfiI	GAWTC	3 cut(s)	4, 83, 305
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	2 cut(s)	146, 154
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	17, 420
TspRI	CASTG	2 cut(s)	146, 154
XapI	RAATTY	2 cut(s)	133, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.