Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014641

Physical Location & Seq

Genomic Coordinates Forward (+)

22694704 .. 22699437

Gene Structure 4734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48466

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2577 bp

ATGGAAGGTCAAGAAGAGAAGGTTTACGTTGCACTTGGGAACCAGCTGCCAGATGGAATCAAGACTTTGGAGTGGACTTTGAGGAAGTGGAGATTTCAGCCGATTTCGATTGTTATCCTTCATATAACCAACAGTGTTTCTGCCAAAGATTATGTTTCCACCCCATATGGGAAGCTGCCTGCAAGTTATGTGAGTGATGAGAAAGTGAAGATTCTGAGGAGGCTTGATCAAGACAAAATTGACAAAATCCTTTCCAAGTACATAAATTTCTGTCGCAAGGCTAGGGTGAAGGCTGAGATACTCAACGTGGAGAGATATGATGACCCTATTCATATGCAAATCCTAGATCTGATTTCGGGACTTCATATAACCAAATTGGTGATGGGATTTTTGTTCATGAAATCATCTTCATGGTTTCAAAACATAAACTTTGGTACATCAAATATGAAGTCCGACCCAATATACGCACACAACGTTAATGACTCCGTCAGTCCGCATGCCATTACGCACATAATGAAGGGCAGAATGAGTTTTTCATTTGTCAACAGGAAACCAAAAACCGTAATCAGTGGATCATTTCACATCCATCAGCACAAGCCGGAATCTTGTGAATTCTTCATAATATGTGGTGGAAAGGAGGTATTTCTAAGAGGAGAAAATAATGATCAAAGAATATCAATGGAAGATGATCAAGGAGCCATGGTTGCAACAATGAAAGACAGGGTCAGTATCAAATTTATCATAGGAAGTATGTTCGGAAGTCGTCAAAGCTCATCTGTTTCATCAACAAGAAACCATTCATCCAGCTTGGAAAATATGCAGTGGGATAATTGTGTTCAAGAAATTGAGATTTACTTGCAGCAGTTGTGTTCAAATTCGGATGAAGAAGATTATCATGAACAGGAAAGTGATACTACTCAACAAGCTAGTCCAACAGATGCCATAGTGCTGGAACTTAATGGAAATCCGAATTTGAACATTGCAGAAAAATTTGAGTCCCTTAAAATTAAAGTAAGAGAAGCTCATGAGAGGTTACAGTCGAAGAAGAAAGAAGTCCAAGCAAGTGTTGATAGGCGTCTCAAAGCTGAATGGGCCATTTGTTTATGCAAACGCCGGGCTGAAGAGTTAGAGATTCAAATAAAGGAAGAGGCCAAGAAGAGAATAGAAATGAAGAAATTACTAGACAAAGATAAAGATTTCCTCCATGAAGTAAAAACCGATATTGAAGAAAGCAAGAACAAGCTAAACTCACTCATAGAGCTTCGATCAGAGCTTTCACAAAGGCTCCGTATTTCCAAAATGGCAAGAGCACGCATGGAGGCCCAGCTAGAGAATGACATAACAAATCGTGCAGAAATGGTTCGAGAAATCGAAGAGTTGCGACGAGAAAGAGACGTTTTCCAGCGGAGGATTGAATTTTGCAGAGAGAAAGATGCCCTAGGAATGGCAGGAAGGTCGAGTAGTGATCAACTGAGCTGCTGTTTGAGGGAGTACACAGTCGAAGAGATAAAATTGGCCACCAATGGCTATTCAGAGAGATTGTTATTTAAAACAGGAAGTGATAGAAGCCTTACTGTTTATAAAGGGCGTATCAACCATGACAGAGTTGCTATCAAACTATTCAACTCGGATGATGGACTGCCCCGAGAAGATTTTCAAGCCAAGGTGAAGCTCATCAGCCACATTAGGCACCCTCATCTGCTTGCCATGATGGGCTACTGCTCCGAGCTAAACTGCATTGTCTATGAATACATGCACAATGGTAGCCTACAGGATGTCTTATTTTCCTCTCCGGAAAACTCTATAAAGGGATGCCGGGTTCTGACGTGGCACGACCGCATTCGCATTGCAGCTGAGGTTTGCTCCGCCGTGTGCTACATCCACGAGGCTCGGCCCAAGCCCATTATTCATGGGCACCTCAGCCCATCCAACATCCTCCTCGATGGCAACCTCGTTGCGAAAGTCGGTGGGTTTGAGCTCGGCCACTACGACGAAAGCCATGTTGGATGGGACGTACGGGCTTTCGGGGTTTTGACTATGAATCTTCTAATCGGGAGGAATACAGTTGATGAGGCTATGTTTACGGATATGACAGGCCTGGTCCGGGCTTTAGACGAGACTGCTGGGCCTTGGCCATTGGATTTGGCTCAGGAACTTGCGGGCTTGGTATCACTGTGTTTATCCGTAAACGATAGGCCTAATATGGATTGTCATCATTTAATGATGACAATAATGGAAGAGCTTGATGTAATCAAGAAAAAGGCTGATGATGATTTTGTTGCAAGAGGAGGGTCATATGGAGTGAATATTGGTGGAAGAGTTCATGAAGAAGTCTGCAATGATGTCCCAAGTGTTTTCCTCTGCCCCATCTTTCAGGAAGTTATGAAGGATCCACATGTGGCCGCTGATGGATTTTCATACGAGCGGGAAGCCATTGGAGAATGGTTGCGAATGGGACGCGATACATCACCAATGACAAATCTACAACTTACGCACACAACTCTTGTCCCTAATCGTACCCTTCGTTCTCTTATTCAAGAGTGGCATTGTAAAAGATCGATTCCATATCCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

858

Amino Acids

98.22

Weight (kDa)

6.4

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	525 - 661	1.8e-18	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	525 - 660	2.1e-10	Protein kinase domain
U-box	PF04564	782 - 853	1.6e-18	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014641)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19540
malus_domestica	MD01G1040600.v1.1 MD15G1311200.v1.1
prunus_persica	Prupe.6G202800_v2.0.a1 Prupe.6G202800_v2.0.a1 Prupe.6G202800_v2.0.a1 Prupe.6G202800_v2.0.a1 Prupe.6G202800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0111051
rosa_laevigata	RLG00000017861
rosa_multiflora	Rmu_sc0003994.1_g000002
rosa_rugosa	Rorug02G0170700
rosa_samantha	Rh2AG223100 Rh2BG235100 Rh2CG226600 Rh2DG230900
rosa_wichuraiana	Rw2G017220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1581
AccB1I	GGYRCC	2 cut(s)	1689, 1914
AccBSI	CCGCTC	1 cut(s)	2425
AccII	CGCG	1 cut(s)	2460
AccIII	TCCGGA	1 cut(s)	1792
AciI	CCGC	7 cut(s)	494, 1405, 1837, 1866, 2159, 2403, 2425
AclI	AACGTT	1 cut(s)	474
AclWI	GGATC	3 cut(s)	580, 2384, 2397
AcoI	YGGCCR	4 cut(s)	1515, 1981, 2132, 2400
AcsI	RAATTY	7 cut(s)	265, 611, 734, 874, 970, 989, 1415
AcuI	CTGAAG	1 cut(s)	1140
AcyI	GRCGYC	1 cut(s)	1075
AfaI	GTAC	5 cut(s)	260, 436, 1493, 2016, 2518
AfiI	CCNNNNNNNGG	3 cut(s)	168, 1444, 2104
AflIII	ACRYGT	1 cut(s)	2395
AjiI	CACGTC	1 cut(s)	1827
AjnI	CCWGG	1 cut(s)	2097
AjuI	GAANNNNNNNTTGG	2 cut(s)	1986, 2018
AloI	GAACNNNNNNTCC	2 cut(s)	1803, 1835
Alw21I	GWGCWC	2 cut(s)	1312, 1980
Alw26I	GTCTC	3 cut(s)	1082, 1386, 2111
AlwI	GGATC	3 cut(s)	580, 2384, 2397
Ama87I	CYCGRG	1 cut(s)	1644
Aor13HI	TCCGGA	1 cut(s)	1792
ApeKI	GCWGC	5 cut(s)	46, 175, 859, 1476, 1850
ApoI	RAATTY	7 cut(s)	265, 611, 734, 874, 970, 989, 1415
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
Asp700I	GAANNNNTTC	3 cut(s)	796, 1359, 1653
AspA2I	CCTAGG	1 cut(s)	1438
AspS9I	GGNCC	5 cut(s)	1092, 1321, 1893, 2101, 2126
AsuC2I	CCSGG	3 cut(s)	1115, 1817, 2105
AsuHPI	GGTGA	4 cut(s)	298, 391, 1678, 2460
AvaI	CYCGRG	1 cut(s)	1644
AvaII	GGWCC	1 cut(s)	2101
AvrII	CCTAGG	1 cut(s)	1438
BaeGI	GKGCMC	1 cut(s)	1917
BalI	TGGCCA	2 cut(s)	1517, 2134
BamHI	GGATCC	1 cut(s)	2389
BanI	GGYRCC	2 cut(s)	1689, 1914
BanII	GRGCYC	1 cut(s)	1980
BauI	CACGAG	1 cut(s)	1883
Bbv12I	GWGCWC	2 cut(s)	1312, 1980
BbvCI	CCTCAGC	2 cut(s)	1854, 1919
BbvI	GCAGC	5 cut(s)	33, 162, 871, 1463, 1862
BceAI	ACGGC	1 cut(s)	1853
BcgI	CGANNNNNNTGC	2 cut(s)	1437, 1471
BciT130I	CCWGG	1 cut(s)	2099
BclI	TGATCA	4 cut(s)	226, 664, 688, 1465
BcnI	CCSGG	3 cut(s)	1115, 1817, 2105
BcoDI	GTCTC	3 cut(s)	1082, 1386, 2111
BfaI	CTAG	6 cut(s)	282, 344, 927, 1181, 1328, 1439
BfmI	CTRYAG	1 cut(s)	1769
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	6 cut(s)	47, 176, 860, 1477, 1851, 2403
BlnI	CCTAGG	1 cut(s)	1438
BlsI	GCNGC	6 cut(s)	48, 177, 861, 1478, 1852, 2404
Bme1390I	CCNGG	4 cut(s)	1115, 1817, 2099, 2105
Bme18I	GGWCC	1 cut(s)	2101
BmeT110I	CYCGRG	1 cut(s)	1644
BmgBI	CACGTC	1 cut(s)	1827
BmgT120I	GGNCC	5 cut(s)	1092, 1321, 1893, 2101, 2126
BmiI	GGNNCC	6 cut(s)	41, 697, 1286, 1691, 1916, 2391
BmrFI	CCNGG	4 cut(s)	1115, 1817, 2099, 2105
BmsI	GCATC	3 cut(s)	928, 1423, 1802
BplI	GAGNNNNNCTC	2 cut(s)	1847, 1879
Bpu10I	CCTNAGC	3 cut(s)	1854, 1919, 2148
BpuMI	CCSGG	3 cut(s)	1115, 1817, 2105
Bsa29I	ATCGAT	1 cut(s)	2558
BsaBI	GATNNNNATC	2 cut(s)	113, 2211
BsaHI	GRCGYC	1 cut(s)	1075
BsaJI	CCNNGG	4 cut(s)	699, 1438, 1662, 2129
BsaWI	WCCGGW	1 cut(s)	1792
BsaXI	ACNNNNNCTCC	4 cut(s)	687, 717, 1269, 1299
Bsc4I	CCNNNNNNNGG	3 cut(s)	168, 1444, 2104
Bse3DI	GCAATG	3 cut(s)	978, 1845, 2344
Bse8I	GATNNNNATC	2 cut(s)	113, 2211
BseAI	TCCGGA	1 cut(s)	1792
BseBI	CCWGG	1 cut(s)	2099
BseCI	ATCGAT	1 cut(s)	2558
BseDI	CCNNGG	4 cut(s)	699, 1438, 1662, 2129
BseJI	GATNNNNATC	2 cut(s)	113, 2211
BseLI	CCNNNNNNNGG	3 cut(s)	168, 1444, 2104
BseMI	GCAATG	3 cut(s)	978, 1845, 2344
BseMII	CTCAG	6 cut(s)	206, 285, 1463, 1845, 1933, 2162
BseRI	GAGGAG	4 cut(s)	232, 666, 1928, 2301
BseSI	GKGCMC	1 cut(s)	1917
BseXI	GCAGC	5 cut(s)	33, 162, 871, 1463, 1862
BseYI	CCCAGC	2 cut(s)	1323, 2123
BsgI	GTGCAG	1 cut(s)	1371
Bsh1236I	CGCG	1 cut(s)	2460
Bsh1285I	CGRYCG	1 cut(s)	1837
BshNI	GGYRCC	2 cut(s)	1689, 1914
BshVI	ATCGAT	1 cut(s)	2558
BsiEI	CGRYCG	1 cut(s)	1837
BsiHKAI	GWGCWC	2 cut(s)	1312, 1980
BsiHKCI	CYCGRG	1 cut(s)	1644
BsiSI	CCGG	5 cut(s)	599, 1114, 1793, 1816, 2104
BsiWI	CGTACG	1 cut(s)	2014
BslFI	GGGAC	6 cut(s)	372, 982, 2024, 2330, 2469, 2492
BslI	CCNNNNNNNGG	3 cut(s)	168, 1444, 2104
BsmAI	GTCTC	3 cut(s)	1082, 1386, 2111
BsmBI	CGTCTC	2 cut(s)	1082, 1386
BsmFI	GGGAC	6 cut(s)	372, 982, 2024, 2330, 2469, 2492
BsmI	GAATGC	1 cut(s)	1839
BsoBI	CYCGRG	1 cut(s)	1644
Bsp1286I	GDGCHC	3 cut(s)	1312, 1917, 1980
Bsp13I	TCCGGA	1 cut(s)	1792
Bsp143I	GATC	9 cut(s)	226, 346, 572, 664, 688, 1265, 1465, 2389, 2555
Bsp19I	CCATGG	1 cut(s)	699
BspACI	CCGC	7 cut(s)	494, 1405, 1837, 1866, 2159, 2403, 2425
BspCNI	CTCAG	6 cut(s)	207, 286, 1464, 1846, 1932, 2161
BspDI	ATCGAT	1 cut(s)	2558
BspEI	TCCGGA	1 cut(s)	1792
BspFNI	CGCG	1 cut(s)	2460
BspHI	TCATGA	4 cut(s)	396, 895, 1024, 2323
BspLI	GGNNCC	6 cut(s)	41, 697, 1286, 1691, 1916, 2391
BspPI	GGATC	3 cut(s)	580, 2384, 2397
BspQI	GCTCTTC	1 cut(s)	2232
BspT107I	GGYRCC	2 cut(s)	1689, 1914
BsrBI	CCGCTC	1 cut(s)	2425
BsrDI	GCAATG	3 cut(s)	978, 1845, 2344
BssECI	CCNNGG	4 cut(s)	699, 1438, 1662, 2129
BssMI	GATC	9 cut(s)	226, 346, 572, 664, 688, 1265, 1465, 2389, 2555
BssNI	GRCGYC	1 cut(s)	1075
BssSI	CACGAG	1 cut(s)	1883
BssT1I	CCWWGG	4 cut(s)	699, 1438, 1662, 2129
Bst2BI	CACGAG	1 cut(s)	1883
Bst2UI	CCWGG	1 cut(s)	2099
Bst4CI	ACNGT	8 cut(s)	134, 562, 1038, 1498, 1576, 2065, 2175, 2574
Bst6I	CTCTTC	8 cut(s)	9, 1116, 1140, 1151, 1368, 1497, 2232, 2311
BstACI	GRCGYC	1 cut(s)	1075
BstC8I	GCNNGC	5 cut(s)	180, 498, 1312, 1704, 2161
BstDEI	CTNAG	7 cut(s)	215, 294, 647, 1472, 1854, 1919, 2148
BstDSI	CCRYGG	1 cut(s)	699
BstFNI	CGCG	1 cut(s)	2460
BstKTI	GATC	9 cut(s)	229, 349, 575, 667, 691, 1268, 1468, 2392, 2558
BstMAI	GTCTC	3 cut(s)	1082, 1386, 2111
BstMBI	GATC	9 cut(s)	226, 346, 572, 664, 688, 1265, 1465, 2389, 2555
BstMCI	CGRYCG	1 cut(s)	1837
BstMWI	GCNNNNNNNGC	2 cut(s)	704, 1091
BstNI	CCWGG	1 cut(s)	2099
BstNSI	RCATGY	3 cut(s)	500, 1756, 2399
BstSCI	CCNGG	4 cut(s)	1113, 1815, 2097, 2103
BstSFI	CTRYAG	1 cut(s)	1769
BstSLI	GKGCMC	1 cut(s)	1917
BstUI	CGCG	1 cut(s)	2460
BstV1I	GCAGC	5 cut(s)	33, 162, 871, 1463, 1862
BstX2I	RGATCY	2 cut(s)	346, 2389
BstXI	CCANNNNNNTGG	1 cut(s)	949
BstYI	RGATCY	2 cut(s)	346, 2389
Bsu15I	ATCGAT	1 cut(s)	2558
BsuTUI	ATCGAT	1 cut(s)	2558
BtgI	CCRYGG	1 cut(s)	699
BtrI	CACGTC	1 cut(s)	1827
BtsI	GCAGTG	1 cut(s)	827
BtsIMutI	CAGTG	4 cut(s)	139, 574, 827, 2171
Cac8I	GCNNGC	5 cut(s)	180, 498, 1312, 1704, 2161
CciI	TCATGA	4 cut(s)	396, 895, 1024, 2323
Cfr13I	GGNCC	5 cut(s)	1092, 1321, 1893, 2101, 2126
ClaI	ATCGAT	1 cut(s)	2558
CseI	GACGC	2 cut(s)	1064, 2466
Csp6I	GTAC	5 cut(s)	259, 435, 1492, 2015, 2517
CviQI	GTAC	5 cut(s)	259, 435, 1492, 2015, 2517
DdeI	CTNAG	7 cut(s)	215, 294, 647, 1472, 1854, 1919, 2148
DpnI	GATC	9 cut(s)	228, 348, 574, 666, 690, 1267, 1467, 2391, 2557
DpnII	GATC	9 cut(s)	226, 346, 572, 664, 688, 1265, 1465, 2389, 2555
DraI	TTTAAA	1 cut(s)	1549
EaeI	YGGCCR	4 cut(s)	1515, 1981, 2132, 2400
Eam1104I	CTCTTC	8 cut(s)	9, 1116, 1140, 1151, 1368, 1497, 2232, 2311
EarI	CTCTTC	8 cut(s)	9, 1116, 1140, 1151, 1368, 1497, 2232, 2311
EciI	GGCGGA	1 cut(s)	1855
Ecl136II	GAGCTC	1 cut(s)	1978
Eco130I	CCWWGG	4 cut(s)	699, 1438, 1662, 2129
Eco147I	AGGCCT	2 cut(s)	2097, 2197
Eco24I	GRGCYC	1 cut(s)	1980
Eco47I	GGWCC	1 cut(s)	2101
Eco53kI	GAGCTC	1 cut(s)	1978
Eco57I	CTGAAG	1 cut(s)	1140
Eco88I	CYCGRG	1 cut(s)	1644
EcoICRI	GAGCTC	1 cut(s)	1978
EcoRI	GAATTC	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	2097
EcoT14I	CCWWGG	4 cut(s)	699, 1438, 1662, 2129
EcoT38I	GRGCYC	1 cut(s)	1980
ErhI	CCWWGG	4 cut(s)	699, 1438, 1662, 2129
Esp3I	CGTCTC	2 cut(s)	1082, 1386
FaqI	GGGAC	6 cut(s)	372, 982, 2024, 2330, 2469, 2492
FauI	CCCGC	2 cut(s)	2152, 2418
FauNDI	CATATG	3 cut(s)	166, 333, 2296
FbaI	TGATCA	4 cut(s)	226, 664, 688, 1465
Fnu4HI	GCNGC	6 cut(s)	47, 176, 860, 1477, 1851, 2403
FriOI	GRGCYC	1 cut(s)	1980
Fsp4HI	GCNGC	6 cut(s)	47, 176, 860, 1477, 1851, 2403
FspBI	CTAG	6 cut(s)	282, 344, 927, 1181, 1328, 1439
GluI	GCNGC	6 cut(s)	47, 176, 860, 1477, 1851, 2403
GsaI	CCCAGC	2 cut(s)	1327, 2127
HapII	CCGG	5 cut(s)	599, 1114, 1793, 1816, 2104
HgaI	GACGC	2 cut(s)	1064, 2466
Hin1I	GRCGYC	1 cut(s)	1075
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	8 cut(s)	57, 211, 482, 602, 995, 1132, 2041, 2560
HpaII	CCGG	5 cut(s)	599, 1114, 1793, 1816, 2104
HphI	GGTGA	4 cut(s)	298, 391, 1678, 2460
Hpy166II	GTNNAC	6 cut(s)	25, 75, 544, 1494, 2082, 2188
Hpy8I	GTNNAC	6 cut(s)	25, 75, 544, 1494, 2082, 2188
Hpy99I	CGWCG	2 cut(s)	1386, 1994
HpyAV	CCTTC	7 cut(s)	13, 128, 283, 511, 1446, 2380, 2531
HpyCH4III	ACNGT	8 cut(s)	134, 562, 1038, 1498, 1576, 2065, 2175, 2574
HpyCH4IV	ACGT	6 cut(s)	27, 306, 474, 1395, 1826, 2013
HpyF10VI	GCNNNNNNNGC	2 cut(s)	704, 1091
HpyF3I	CTNAG	7 cut(s)	215, 294, 647, 1472, 1854, 1919, 2148
HpySE526I	ACGT	6 cut(s)	27, 306, 474, 1395, 1826, 2013
Hsp92I	GRCGYC	1 cut(s)	1075
Kpn2I	TCCGGA	1 cut(s)	1792
Ksp22I	TGATCA	4 cut(s)	226, 664, 688, 1465
Kzo9I	GATC	9 cut(s)	226, 346, 572, 664, 688, 1265, 1465, 2389, 2555
LguI	GCTCTTC	1 cut(s)	2232
LmnI	GCTCC	4 cut(s)	695, 1290, 1727, 1868
Lsp1109I	GCAGC	5 cut(s)	33, 162, 871, 1463, 1862
LweI	GCATC	3 cut(s)	928, 1423, 1802
MaeI	CTAG	6 cut(s)	282, 344, 927, 1181, 1328, 1439
MaeII	ACGT	6 cut(s)	27, 306, 474, 1395, 1826, 2013
MaeIII	GTNAC	1 cut(s)	1032
MalI	GATC	9 cut(s)	228, 348, 574, 666, 690, 1267, 1467, 2391, 2557
MbiI	CCGCTC	1 cut(s)	2425
MboI	GATC	9 cut(s)	226, 346, 572, 664, 688, 1265, 1465, 2389, 2555
MflI	RGATCY	2 cut(s)	346, 2389
MhlI	GDGCHC	3 cut(s)	1312, 1917, 1980
MlsI	TGGCCA	2 cut(s)	1517, 2134
MluNI	TGGCCA	2 cut(s)	1517, 2134
MlyI	GAGTC	2 cut(s)	476, 1004
MmeI	TCCRAC	4 cut(s)	477, 956, 1953, 1984
Mox20I	TGGCCA	2 cut(s)	1517, 2134
MroI	TCCGGA	1 cut(s)	1792
MroXI	GAANNNNTTC	3 cut(s)	796, 1359, 1653
MscI	TGGCCA	2 cut(s)	1517, 2134
MseI	TTAA	6 cut(s)	477, 957, 1002, 1008, 1548, 2219
MslI	CAYNNNNRTG	1 cut(s)	409
Msp20I	TGGCCA	2 cut(s)	1517, 2134
MspA1I	CMGCKG	4 cut(s)	46, 1405, 1853, 2405
MspI	CCGG	5 cut(s)	599, 1114, 1793, 1816, 2104
MspR9I	CCNGG	4 cut(s)	1115, 1817, 2099, 2105
Mva1269I	GAATGC	1 cut(s)	1839
MvaI	CCWGG	1 cut(s)	2099
MvnI	CGCG	1 cut(s)	2460
MwoI	GCNNNNNNNGC	2 cut(s)	704, 1091
NciI	CCSGG	3 cut(s)	1115, 1817, 2105
NcoI	CCATGG	1 cut(s)	699
NdeI	CATATG	3 cut(s)	166, 333, 2296
NdeII	GATC	9 cut(s)	226, 346, 572, 664, 688, 1265, 1465, 2389, 2555
NlaIV	GGNNCC	6 cut(s)	41, 697, 1286, 1691, 1916, 2391
NmeAIII	GCCGAG	2 cut(s)	1870, 1959
NspI	RCATGY	3 cut(s)	500, 1756, 2399
PaeI	GCATGC	1 cut(s)	500
PagI	TCATGA	4 cut(s)	396, 895, 1024, 2323
PceI	AGGCCT	2 cut(s)	2097, 2197
PciI	ACATGT	1 cut(s)	2395
PciSI	GCTCTTC	1 cut(s)	2232
PcsI	WCGNNNNNNNCGW	3 cut(s)	471, 1986, 2521
PctI	GAATGC	1 cut(s)	1839
PdmI	GAANNNNTTC	3 cut(s)	796, 1359, 1653
PfeI	GAWTC	6 cut(s)	57, 211, 602, 1132, 2041, 2560
Pfl23II	CGTACG	1 cut(s)	2014
PflFI	GACNNNGTC	2 cut(s)	485, 722
PkrI	GCNGC	6 cut(s)	48, 177, 861, 1478, 1852, 2404
PleI	GAGTC	2 cut(s)	476, 1003
PpsI	GAGTC	2 cut(s)	476, 1003
PscI	ACATGT	1 cut(s)	2395
PsiI	TTATAA	1 cut(s)	1581
Psp124BI	GAGCTC	1 cut(s)	1980
Psp1406I	AACGTT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	2097
PspFI	CCCAGC	2 cut(s)	1323, 2123
PspGI	CCWGG	1 cut(s)	2097
PspLI	CGTACG	1 cut(s)	2014
PspN4I	GGNNCC	6 cut(s)	41, 697, 1286, 1691, 1916, 2391
PspPI	GGNCC	5 cut(s)	1092, 1321, 1893, 2101, 2126
PsrI	GAACNNNNNNTAC	2 cut(s)	2509, 2541
PsuI	RGATCY	2 cut(s)	346, 2389
PsyI	GACNNNGTC	2 cut(s)	485, 722
PvuII	CAGCTG	2 cut(s)	46, 1853
RsaI	GTAC	5 cut(s)	260, 436, 1493, 2016, 2518
RsaNI	GTAC	5 cut(s)	259, 435, 1492, 2015, 2517
RseI	CAYNNNNRTG	1 cut(s)	409
SacI	GAGCTC	1 cut(s)	1980
SapI	GCTCTTC	1 cut(s)	2232
SaqAI	TTAA	6 cut(s)	477, 957, 1002, 1008, 1548, 2219
SatI	GCNGC	6 cut(s)	47, 176, 860, 1477, 1851, 2403
Sau3AI	GATC	9 cut(s)	226, 346, 572, 664, 688, 1265, 1465, 2389, 2555
Sau96I	GGNCC	5 cut(s)	1092, 1321, 1893, 2101, 2126
SchI	GAGTC	2 cut(s)	476, 1004
ScrFI	CCNGG	4 cut(s)	1115, 1817, 2099, 2105
SduI	GDGCHC	3 cut(s)	1312, 1917, 1980
SfaNI	GCATC	3 cut(s)	928, 1423, 1802
SfcI	CTRYAG	1 cut(s)	1769
SinI	GGWCC	1 cut(s)	2101
SmiMI	CAYNNNNRTG	1 cut(s)	409
SphI	GCATGC	1 cut(s)	500
SseBI	AGGCCT	2 cut(s)	2097, 2197
SsiI	CCGC	7 cut(s)	494, 1405, 1837, 1866, 2159, 2403, 2425
SspI	AATATT	1 cut(s)	2308
SspMI	CTAG	6 cut(s)	282, 344, 927, 1181, 1328, 1439
SstI	GAGCTC	1 cut(s)	1980
StuI	AGGCCT	2 cut(s)	2097, 2197
StyD4I	CCNGG	4 cut(s)	1113, 1815, 2097, 2103
StyI	CCWWGG	4 cut(s)	699, 1438, 1662, 2129
TaaI	ACNGT	8 cut(s)	134, 562, 1038, 1498, 1576, 2065, 2175, 2574
TaiI	ACGT	6 cut(s)	30, 309, 477, 1398, 1829, 2016
TaqI	TCGA	9 cut(s)	107, 1040, 1264, 1363, 1371, 1457, 1500, 1941, 2558
TatI	WGTACW	2 cut(s)	258, 1491
TauI	GCSGC	1 cut(s)	2405
TfiI	GAWTC	6 cut(s)	57, 211, 602, 1132, 2041, 2560
Tru1I	TTAA	6 cut(s)	477, 957, 1002, 1008, 1548, 2219
Tru9I	TTAA	6 cut(s)	477, 957, 1002, 1008, 1548, 2219
TscAI	CASTG	4 cut(s)	139, 574, 827, 2178
TseI	GCWGC	5 cut(s)	46, 175, 859, 1476, 1850
TspGWI	ACGGA	4 cut(s)	475, 1277, 2099, 2173
TspRI	CASTG	4 cut(s)	139, 574, 827, 2178
Tth111I	GACNNNGTC	2 cut(s)	485, 722
VpaK11BI	GGWCC	1 cut(s)	2101
XapI	RAATTY	7 cut(s)	265, 611, 734, 874, 970, 989, 1415
XceI	RCATGY	3 cut(s)	500, 1756, 2399
XcmI	CCANNNNNNNNNTGG	2 cut(s)	50, 379
XmaJI	CCTAGG	1 cut(s)	1438
XmnI	GAANNNNTTC	3 cut(s)	796, 1359, 1653
XspI	CTAG	6 cut(s)	282, 344, 927, 1181, 1328, 1439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.