Prupe.6G226400_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
23074247 .. 23076109
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G226400.1

Sequence Viewer

Length: 1863 bp
ATGACCTCCTCAACAACCCCTCTGGTCACCACCACACCCTCTCACCGCCAACACCCGCCATCAATTGACAGACTCACATTCCTCATCGACAAGTCAAAATCCATCAACCACCTTCTGCAAACGCACGCCCTTCTCCTCCGCCACGGTCTCCACAACCACCCAATCCTCAACTTTAAGCTCCAACGCTCCTACGCCTCTCTCGGCCGCCTCGACTACACAGTCGCCCTTTTCCAACGAACCCACAACCCCAGCGTCTTCTTCTGGACCTCCATCATCCACAGCCATGCCCAATGCGGTCTTCATGACCTTGCCCTCATGTACTACACCCAAATGCTGACCAATGGCGTAGAACCCAATTGCTTCACCTTCTCCGCTGTCATGAAAACTTGCCCGCTTAGACTCGGAAAAGCCCTCCATTCCCAGACGATTAAACTCGGGTTTGATTCGGATTTGTATGTCAGGACGGGTCTTGTTGATGTTTATGCGAGAGCTGGTGATGTCGTGTCTGCAAGACAACTGTTTGATACAATGCCTGAGAAGAGTTTGGTTTCTTTGACGGCGATGATCACTTGTTATGCAAAAAGAGGGGAGGTTGAGGAGGCCCGTGTGCTGTTTGATGGGATGGAGGAGAGAGATGTGGTATGTTGGAATGTGATGATTGATGGGTATGCTCAGCATGGGATGCCAAATGAGGCTTTGTTGCTGTTTAGGAAAATGCTGGTGGCGAAAATTAAGCCAAACGAACTGACTGTACTGTCTTTGCTCTCTGCTTGTGGGCAGCTTGGGGCTCTTGAATCAGGTCGATGGCTTCATTCTTACATTGAAAATAATGGGATTCAAGTCAATACTCATGTGGGAACTGCTTTGATTGATATGTATAGTAAATGTGGTAGTTTGGAGGATGCTTGTCTGGTTTTTGATATGATCGATGAGAAGGACGTTGTTGCTTGGAATTCGATGATTGTAGGTTATGCAATGCACGGATTTAGCCGAGATGCATTGCAGTTGTTCCATGAAATGTGTAGACTTAGTTGCCAACCTACTGATATAACCTTCATTGGTGTTTTGAGTGCTTGTGCCTATGCTGGTTTGGTCAGCGAGGGACGAGCTTTTTTCAGTTCAATGAAGGATGAATATGGAATTGAACCGAAGATTGAGCATTACGGGTGCATGGTAAATCTCCTCAGCCGTGCTGGACAGCTTGAAGAAGCATATGAGTTTGTCAAGAACATGAAGATAGATCCTGATCCTGTCCTATGGGGAACTTTACTTGGGGCTTGTAGACTCCATGGTAACATTACTTTGGGAGAGGAGATAGCAGAGTTTCTCCTTGGCCAAAACCTCGCAAATTCAGGAACATTTATTCTTCTTTCTAACATCTATGCCGCAGCTGGGAACTGGGATGGGGTGGCAAGGGTGAGGACCTTGATGAAACACAGTGGGATTCAGAAGGAGCCTGGTTGCAGCTCAATTGAAGTGGATAACAAGGTGCATGAATTCCTTGCAGGGGATAGGAGAAGCCCGAGGAGCAAAGAAATATACATGATGATCAAGGAGATGAACCAGTGGCTTACGGCTCACGGTTACACCCCACAAATTGATACTGTGCTACATGATTTGGGGGAGAGAGAAAAGGAGCAATCCCTTGAAGTTCATAGTGAGAAGCTTGCTATTGCTTTCGGGCTAATAAGCACTCAACCCGGAACTACAATCAAAATTGTAAAGAACCTCCGTGTGTGTTCGGATTGTCATGCCGTGACCAAGCTAATTTCAAAAATTACCGGGCGGAAGATTGTAATGAGGGACAGAAACAGGTTTCACCACTTTGCAAATGGTTCATGCTCTTGTGGCGATTACTGGTGA

Protein Analysis

621

Amino Acids

69.39

Weight (kDa)

6.71

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016600)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37380
fragaria_vesca FvH4_1g16950
malus_domestica MD15G1290500.v1.1
prunus_persica Prupe.6G226400_v2.0.a1
pyrus_communis pycom15g25420
rosa_chinensis RchiOBHm_Chr2g0107031
rosa_laevigata RLG00000017551
rosa_multiflora Rmu_sc0007106.1_g000001
rosa_roxburghii Rroxscaffold_2G00136670
rosa_rugosa Rorug02G0140000
rosa_samantha Rh2BG202400 Rh2CG195600 Rh2DG197900
rosa_wichuraiana Rw2G015050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 218, 754
AccI GTMKAC 2 cut(s) 1024, 1282
AciI CCGC 9 cut(s) 46, 56, 139, 205, 294, 372, 392, 1386, 1786
AclWI GGATC 2 cut(s) 1235, 1241
AcoI YGGCCR 2 cut(s) 202, 1333
AcsI RAATTY 3 cut(s) 952, 1348, 1496
AfaI GTAC 2 cut(s) 320, 753
AfiI CCNNNNNNNGG 2 cut(s) 1392, 1507
AgsI TTSAA 9 cut(s) 794, 824, 839, 1122, 1145, 1205, 1475, 1649, 1773
AjnI CCWGG 1 cut(s) 1456
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 9 cut(s) 178, 491, 781, 1109, 1201, 1391, 1467, 1666, 1765
AluI AGCT 9 cut(s) 178, 491, 781, 1109, 1201, 1391, 1467, 1666, 1765
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 2 cut(s) 1235, 1241
Ama87I CYCGRG 2 cut(s) 434, 1522
AoxI GGCC 3 cut(s) 202, 600, 1333
ApeKI GCWGC 3 cut(s) 778, 1388, 1464
ApoI RAATTY 3 cut(s) 952, 1348, 1496
AspS9I GGNCC 3 cut(s) 264, 601, 1422
AsuC2I CCSGG 2 cut(s) 1701, 1783
AsuHPI GGTGA 6 cut(s) 19, 35, 355, 506, 1429, 1811
AvaI CYCGRG 2 cut(s) 434, 1522
AvaII GGWCC 2 cut(s) 264, 1422
BalI TGGCCA 1 cut(s) 1335
BanII GRGCYC 1 cut(s) 790
BbsI GAAGAC 2 cut(s) 247, 290
BbvCI CCTCAGC 1 cut(s) 1184
BbvI GCAGC 3 cut(s) 790, 1400, 1476
BccI CCATC 8 cut(s) 67, 110, 278, 611, 616, 656, 798, 1397
BceAI ACGGC 4 cut(s) 573, 1173, 1590, 1739
BciT130I CCWGG 1 cut(s) 1458
BclI TGATCA 2 cut(s) 564, 1548
BcnI CCSGG 2 cut(s) 1701, 1783
BcoDI GTCTC 1 cut(s) 152
BisI GCNGC 5 cut(s) 205, 779, 1386, 1389, 1465
BlpI GCTNAGC 1 cut(s) 672
BlsI GCNGC 5 cut(s) 206, 780, 1387, 1390, 1466
Bme1390I CCNGG 3 cut(s) 1458, 1701, 1783
Bme18I GGWCC 2 cut(s) 264, 1422
BmeT110I CYCGRG 2 cut(s) 434, 1522
BmgT120I GGNCC 3 cut(s) 264, 601, 1422
BmiI GGNNCC 1 cut(s) 1455
BmrFI CCNGG 3 cut(s) 1458, 1701, 1783
BmrI ACTGGG 1 cut(s) 1408
BmsI GCATC 3 cut(s) 672, 892, 985
BmuI ACTGGG 1 cut(s) 1408
BpiI GAAGAC 2 cut(s) 247, 290
Bpu10I CCTNAGC 1 cut(s) 1184
Bpu1102I GCTNAGC 1 cut(s) 672
BpuMI CCSGG 2 cut(s) 1701, 1783
Bsa29I ATCGAT 1 cut(s) 927
BsaBI GATNNNNATC 1 cut(s) 1245
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 4 cut(s) 142, 1288, 1330, 1523
Bsc4I CCNNNNNNNGG 2 cut(s) 1392, 1507
Bse1I ACTGG 3 cut(s) 1403, 1564, 1862
Bse3DI GCAATG 2 cut(s) 981, 998
Bse8I GATNNNNATC 1 cut(s) 1245
BseBI CCWGG 1 cut(s) 1458
BseCI ATCGAT 1 cut(s) 927
BseDI CCNNGG 4 cut(s) 142, 1288, 1330, 1523
BseGI GGATG 6 cut(s) 273, 627, 687, 907, 1135, 1408
BseJI GATNNNNATC 1 cut(s) 1245
BseLI CCNNNNNNNGG 2 cut(s) 1392, 1507
BseMI GCAATG 2 cut(s) 981, 998
BseMII CTCAG 3 cut(s) 525, 686, 1198
BseNI ACTGG 3 cut(s) 1403, 1564, 1862
BseRI GAGGAG 6 cut(s) 125, 611, 641, 1172, 1325, 1540
BseX3I CGGCCG 1 cut(s) 202
BseXI GCAGC 3 cut(s) 790, 1400, 1476
BseYI CCCAGC 2 cut(s) 248, 1391
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 3 cut(s) 204, 602, 1335
BshVI ATCGAT 1 cut(s) 927
BsiEI CGRYCG 1 cut(s) 205
BsiHKCI CYCGRG 2 cut(s) 434, 1522
BsiSI CCGG 2 cut(s) 1701, 1782
BslFI GGGAC 2 cut(s) 1116, 1817
BslI CCNNNNNNNGG 2 cut(s) 1392, 1507
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 2 cut(s) 1116, 1817
BsnI GGCC 3 cut(s) 204, 602, 1335
Bso31I GGTCTC 1 cut(s) 152
BsoBI CYCGRG 2 cut(s) 434, 1522
Bsp1286I GDGCHC 1 cut(s) 790
Bsp143I GATC 5 cut(s) 564, 924, 1240, 1246, 1548
Bsp1720I GCTNAGC 1 cut(s) 672
Bsp19I CCATGG 1 cut(s) 1288
BspACI CCGC 9 cut(s) 46, 56, 139, 205, 294, 372, 392, 1386, 1786
BspANI GGCC 3 cut(s) 204, 602, 1335
BspCNI CTCAG 3 cut(s) 526, 685, 1197
BspDI ATCGAT 1 cut(s) 927
BspHI TCATGA 2 cut(s) 301, 378
BspLI GGNNCC 1 cut(s) 1455
BspPI GGATC 2 cut(s) 1235, 1241
BspTNI GGTCTC 1 cut(s) 152
BsrDI GCAATG 2 cut(s) 981, 998
BsrI ACTGG 3 cut(s) 1403, 1564, 1862
BssECI CCNNGG 4 cut(s) 142, 1288, 1330, 1523
BssMI GATC 5 cut(s) 564, 924, 1240, 1246, 1548
BssT1I CCWWGG 2 cut(s) 1288, 1330
Bst2UI CCWGG 1 cut(s) 1458
Bst4CI ACNGT 8 cut(s) 146, 220, 519, 751, 756, 1439, 1583, 1606
Bst6I CTCTTC 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 682
BstC8I GCNNGC 3 cut(s) 126, 392, 1668
BstDEI CTNAG 5 cut(s) 395, 534, 672, 1028, 1184
BstDSI CCRYGG 2 cut(s) 142, 1288
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 6 cut(s) 273, 627, 687, 907, 1135, 1408
BstKTI GATC 5 cut(s) 567, 927, 1243, 1249, 1551
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 5 cut(s) 564, 924, 1240, 1246, 1548
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 3 cut(s) 682, 1527, 1848
BstNI CCWGG 1 cut(s) 1458
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 3 cut(s) 1456, 1699, 1781
BstV1I GCAGC 3 cut(s) 790, 1400, 1476
BstV2I GAAGAC 2 cut(s) 247, 290
BstX2I RGATCY 1 cut(s) 1240
BstYI RGATCY 1 cut(s) 1240
BstZI CGGCCG 1 cut(s) 202
Bsu15I ATCGAT 1 cut(s) 927
BsuRI GGCC 3 cut(s) 204, 602, 1335
BsuTUI ATCGAT 1 cut(s) 927
BtgI CCRYGG 2 cut(s) 142, 1288
BtgZI GCGATG 1 cut(s) 575
BtsCI GGATG 6 cut(s) 273, 627, 687, 907, 1135, 1408
BtsIMutI CAGTG 2 cut(s) 1444, 1571
Cac8I GCNNGC 3 cut(s) 126, 392, 1668
CciI TCATGA 2 cut(s) 301, 378
Cfr13I GGNCC 3 cut(s) 264, 601, 1422
ClaI ATCGAT 1 cut(s) 927
CseI GACGC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 319, 752
CspCI CAANNNNNGTGG 2 cut(s) 1458, 1493
CviQI GTAC 2 cut(s) 319, 752
DdeI CTNAG 5 cut(s) 395, 534, 672, 1028, 1184
DpnI GATC 5 cut(s) 566, 926, 1242, 1248, 1550
DpnII GATC 5 cut(s) 564, 924, 1240, 1246, 1548
DrdI GACNNNNNNGTC 2 cut(s) 218, 754
DseDI GACNNNNNNGTC 2 cut(s) 218, 754
EaeI YGGCCR 2 cut(s) 202, 1333
EagI CGGCCG 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 533
EarI CTCTTC 1 cut(s) 533
EciI GGCGGA 2 cut(s) 128, 1801
EclXI CGGCCG 1 cut(s) 202
Eco130I CCWWGG 2 cut(s) 1288, 1330
Eco24I GRGCYC 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 2 cut(s) 264, 1422
Eco52I CGGCCG 1 cut(s) 202
Eco88I CYCGRG 2 cut(s) 434, 1522
Eco91I GGTNACC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 1422
EcoO65I GGTNACC 1 cut(s) 25
EcoRI GAATTC 2 cut(s) 952, 1496
EcoRII CCWGG 1 cut(s) 1456
EcoT14I CCWWGG 2 cut(s) 1288, 1330
EcoT22I ATGCAT 1 cut(s) 1000
EcoT38I GRGCYC 1 cut(s) 790
ErhI CCWWGG 2 cut(s) 1288, 1330
FaqI GGGAC 2 cut(s) 1116, 1817
FauI CCCGC 2 cut(s) 63, 399
FauNDI CATATG 1 cut(s) 1213
FbaI TGATCA 2 cut(s) 564, 1548
FblI GTMKAC 2 cut(s) 1024, 1282
Fnu4HI GCNGC 5 cut(s) 205, 779, 1386, 1389, 1465
FokI GGATG 6 cut(s) 260, 634, 694, 914, 1142, 1415
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 5 cut(s) 205, 779, 1386, 1389, 1465
GluI GCNGC 5 cut(s) 205, 779, 1386, 1389, 1465
GsaI CCCAGC 2 cut(s) 252, 1395
HaeIII GGCC 3 cut(s) 204, 602, 1335
HapII CCGG 2 cut(s) 1701, 1782
HgaI GACGC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 1664
HinfI GANTC 7 cut(s) 72, 399, 443, 794, 835, 1284, 1444
HpaII CCGG 2 cut(s) 1701, 1782
HphI GGTGA 6 cut(s) 19, 35, 355, 506, 1429, 1811
Hpy166II GTNNAC 2 cut(s) 1025, 1283
Hpy188I TCNGA 4 cut(s) 404, 448, 1449, 1744
Hpy188III TCNNGA 8 cut(s) 262, 302, 379, 460, 791, 1225, 1244, 1353
Hpy8I GTNNAC 2 cut(s) 1025, 1283
HpyAV CCTTC 7 cut(s) 122, 140, 376, 928, 1063, 1120, 1444
HpyCH4III ACNGT 8 cut(s) 146, 220, 519, 751, 756, 1439, 1583, 1606
HpyCH4IV ACGT 1 cut(s) 939
HpyF10VI GCNNNNNNNGC 3 cut(s) 682, 1527, 1848
HpyF3I CTNAG 5 cut(s) 395, 534, 672, 1028, 1184
HpySE526I ACGT 1 cut(s) 939
Ksp22I TGATCA 2 cut(s) 564, 1548
Kzo9I GATC 5 cut(s) 564, 924, 1240, 1246, 1548
LmnI GCTCC 5 cut(s) 183, 191, 1453, 1527, 1636
Lsp1109I GCAGC 3 cut(s) 790, 1400, 1476
LweI GCATC 3 cut(s) 672, 892, 985
MaeII ACGT 1 cut(s) 939
MaeIII GTNAC 4 cut(s) 25, 1292, 1583, 1756
MalI GATC 5 cut(s) 566, 926, 1242, 1248, 1550
MboI GATC 5 cut(s) 564, 924, 1240, 1246, 1548
MboII GAAGA 9 cut(s) 247, 250, 290, 550, 1162, 1217, 1246, 1358, 1801
MfeI CAATTG 3 cut(s) 63, 355, 1470
MflI RGATCY 1 cut(s) 1240
MhlI GDGCHC 1 cut(s) 790
MlsI TGGCCA 1 cut(s) 1335
MluNI TGGCCA 1 cut(s) 1335
MlyI GAGTC 3 cut(s) 66, 393, 1278
MmeI TCCRAC 3 cut(s) 205, 256, 626
Mox20I TGGCCA 1 cut(s) 1335
Mph1103I ATGCAT 1 cut(s) 1000
MscI TGGCCA 1 cut(s) 1335
MseI TTAA 3 cut(s) 174, 429, 732
MslI CAYNNNNRTG 2 cut(s) 282, 329
Msp20I TGGCCA 1 cut(s) 1335
MspA1I CMGCKG 2 cut(s) 374, 1391
MspI CCGG 2 cut(s) 1701, 1782
MspR9I CCNGG 3 cut(s) 1458, 1701, 1783
MunI CAATTG 3 cut(s) 63, 355, 1470
MvaI CCWGG 1 cut(s) 1458
MwoI GCNNNNNNNGC 3 cut(s) 682, 1527, 1848
NciI CCSGG 2 cut(s) 1701, 1783
NcoI CCATGG 1 cut(s) 1288
NdeI CATATG 1 cut(s) 1213
NdeII GATC 5 cut(s) 564, 924, 1240, 1246, 1548
NlaIV GGNNCC 1 cut(s) 1455
NmeAIII GCCGAG 2 cut(s) 180, 1016
NmuCI GTSAC 2 cut(s) 25, 1756
NsiI ATGCAT 1 cut(s) 1000
PagI TCATGA 2 cut(s) 301, 378
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 4 cut(s) 443, 794, 835, 1444
PkrI GCNGC 5 cut(s) 206, 780, 1387, 1390, 1466
PleI GAGTC 3 cut(s) 66, 393, 1278
PpsI GAGTC 3 cut(s) 66, 393, 1278
PpuMI RGGWCCY 1 cut(s) 1422
Psp5II RGGWCCY 1 cut(s) 1422
Psp6I CCWGG 1 cut(s) 1456
PspEI GGTNACC 1 cut(s) 25
PspFI CCCAGC 2 cut(s) 248, 1391
PspGI CCWGG 1 cut(s) 1456
PspN4I GGNNCC 1 cut(s) 1455
PspPI GGNCC 3 cut(s) 264, 601, 1422
PspPPI RGGWCCY 1 cut(s) 1422
PsrI GAACNNNNNNTAC 2 cut(s) 735, 767
PsuI RGATCY 1 cut(s) 1240
PvuII CAGCTG 1 cut(s) 1391
RsaI GTAC 2 cut(s) 320, 753
RsaNI GTAC 2 cut(s) 319, 752
RseI CAYNNNNRTG 2 cut(s) 282, 329
SaqAI TTAA 3 cut(s) 174, 429, 732
SatI GCNGC 5 cut(s) 205, 779, 1386, 1389, 1465
Sau3AI GATC 5 cut(s) 564, 924, 1240, 1246, 1548
Sau96I GGNCC 3 cut(s) 264, 601, 1422
SchI GAGTC 3 cut(s) 66, 393, 1278
ScrFI CCNGG 3 cut(s) 1458, 1701, 1783
SduI GDGCHC 1 cut(s) 790
SfaNI GCATC 3 cut(s) 672, 892, 985
SinI GGWCC 2 cut(s) 264, 1422
SmiMI CAYNNNNRTG 2 cut(s) 282, 329
SsiI CCGC 9 cut(s) 46, 56, 139, 205, 294, 372, 392, 1386, 1786
StyD4I CCNGG 3 cut(s) 1456, 1699, 1781
StyI CCWWGG 2 cut(s) 1288, 1330
TaaI ACNGT 8 cut(s) 146, 220, 519, 751, 756, 1439, 1583, 1606
TaiI ACGT 1 cut(s) 942
TaqI TCGA 5 cut(s) 87, 210, 802, 927, 956
TatI WGTACW 2 cut(s) 318, 751
TauI GCSGC 2 cut(s) 207, 1388
TfiI GAWTC 4 cut(s) 443, 794, 835, 1444
Tru1I TTAA 3 cut(s) 174, 429, 732
Tru9I TTAA 3 cut(s) 174, 429, 732
TscAI CASTG 2 cut(s) 1444, 1571
TseFI GTSAC 2 cut(s) 25, 1756
TseI GCWGC 3 cut(s) 778, 1388, 1464
Tsp45I GTSAC 2 cut(s) 25, 1756
TspGWI ACGGA 2 cut(s) 996, 1721
TspRI CASTG 2 cut(s) 1444, 1571
VpaK11BI GGWCC 2 cut(s) 264, 1422
XapI RAATTY 3 cut(s) 952, 1348, 1496
XcmI CCANNNNNNNNNTGG 1 cut(s) 1829
XmiI GTMKAC 2 cut(s) 1024, 1282
Zsp2I ATGCAT 1 cut(s) 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.