Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G37380 |
| fragaria_vesca | FvH4_1g16950 |
| malus_domestica | MD15G1290500.v1.1 |
| prunus_persica | Prupe.6G226400_v2.0.a1 |
| pyrus_communis | pycom15g25420 |
| rosa_chinensis | RchiOBHm_Chr2g0107031 |
| rosa_laevigata | RLG00000017551 |
| rosa_multiflora | Rmu_sc0007106.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00136670 |
| rosa_rugosa | Rorug02G0140000 |
| rosa_samantha | Rh2BG202400 Rh2CG195600 Rh2DG197900 |
| rosa_wichuraiana | Rw2G015050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 218, 754 |
| AccI | GTMKAC | 2 cut(s) | 1024, 1282 |
| AciI | CCGC | 9 cut(s) | 46, 56, 139, 205, 294, 372, 392, 1386, 1786 |
| AclWI | GGATC | 2 cut(s) | 1235, 1241 |
| AcoI | YGGCCR | 2 cut(s) | 202, 1333 |
| AcsI | RAATTY | 3 cut(s) | 952, 1348, 1496 |
| AfaI | GTAC | 2 cut(s) | 320, 753 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1392, 1507 |
| AgsI | TTSAA | 9 cut(s) | 794, 824, 839, 1122, 1145, 1205, 1475, 1649, 1773 |
| AjnI | CCWGG | 1 cut(s) | 1456 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 282, 314 |
| AluBI | AGCT | 9 cut(s) | 178, 491, 781, 1109, 1201, 1391, 1467, 1666, 1765 |
| AluI | AGCT | 9 cut(s) | 178, 491, 781, 1109, 1201, 1391, 1467, 1666, 1765 |
| Alw26I | GTCTC | 1 cut(s) | 152 |
| AlwI | GGATC | 2 cut(s) | 1235, 1241 |
| Ama87I | CYCGRG | 2 cut(s) | 434, 1522 |
| AoxI | GGCC | 3 cut(s) | 202, 600, 1333 |
| ApeKI | GCWGC | 3 cut(s) | 778, 1388, 1464 |
| ApoI | RAATTY | 3 cut(s) | 952, 1348, 1496 |
| AspS9I | GGNCC | 3 cut(s) | 264, 601, 1422 |
| AsuC2I | CCSGG | 2 cut(s) | 1701, 1783 |
| AsuHPI | GGTGA | 6 cut(s) | 19, 35, 355, 506, 1429, 1811 |
| AvaI | CYCGRG | 2 cut(s) | 434, 1522 |
| AvaII | GGWCC | 2 cut(s) | 264, 1422 |
| BalI | TGGCCA | 1 cut(s) | 1335 |
| BanII | GRGCYC | 1 cut(s) | 790 |
| BbsI | GAAGAC | 2 cut(s) | 247, 290 |
| BbvCI | CCTCAGC | 1 cut(s) | 1184 |
| BbvI | GCAGC | 3 cut(s) | 790, 1400, 1476 |
| BccI | CCATC | 8 cut(s) | 67, 110, 278, 611, 616, 656, 798, 1397 |
| BceAI | ACGGC | 4 cut(s) | 573, 1173, 1590, 1739 |
| BciT130I | CCWGG | 1 cut(s) | 1458 |
| BclI | TGATCA | 2 cut(s) | 564, 1548 |
| BcnI | CCSGG | 2 cut(s) | 1701, 1783 |
| BcoDI | GTCTC | 1 cut(s) | 152 |
| BisI | GCNGC | 5 cut(s) | 205, 779, 1386, 1389, 1465 |
| BlpI | GCTNAGC | 1 cut(s) | 672 |
| BlsI | GCNGC | 5 cut(s) | 206, 780, 1387, 1390, 1466 |
| Bme1390I | CCNGG | 3 cut(s) | 1458, 1701, 1783 |
| Bme18I | GGWCC | 2 cut(s) | 264, 1422 |
| BmeT110I | CYCGRG | 2 cut(s) | 434, 1522 |
| BmgT120I | GGNCC | 3 cut(s) | 264, 601, 1422 |
| BmiI | GGNNCC | 1 cut(s) | 1455 |
| BmrFI | CCNGG | 3 cut(s) | 1458, 1701, 1783 |
| BmrI | ACTGGG | 1 cut(s) | 1408 |
| BmsI | GCATC | 3 cut(s) | 672, 892, 985 |
| BmuI | ACTGGG | 1 cut(s) | 1408 |
| BpiI | GAAGAC | 2 cut(s) | 247, 290 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1184 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 672 |
| BpuMI | CCSGG | 2 cut(s) | 1701, 1783 |
| Bsa29I | ATCGAT | 1 cut(s) | 927 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1245 |
| BsaI | GGTCTC | 1 cut(s) | 152 |
| BsaJI | CCNNGG | 4 cut(s) | 142, 1288, 1330, 1523 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1392, 1507 |
| Bse1I | ACTGG | 3 cut(s) | 1403, 1564, 1862 |
| Bse3DI | GCAATG | 2 cut(s) | 981, 998 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1245 |
| BseBI | CCWGG | 1 cut(s) | 1458 |
| BseCI | ATCGAT | 1 cut(s) | 927 |
| BseDI | CCNNGG | 4 cut(s) | 142, 1288, 1330, 1523 |
| BseGI | GGATG | 6 cut(s) | 273, 627, 687, 907, 1135, 1408 |
| BseJI | GATNNNNATC | 1 cut(s) | 1245 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1392, 1507 |
| BseMI | GCAATG | 2 cut(s) | 981, 998 |
| BseMII | CTCAG | 3 cut(s) | 525, 686, 1198 |
| BseNI | ACTGG | 3 cut(s) | 1403, 1564, 1862 |
| BseRI | GAGGAG | 6 cut(s) | 125, 611, 641, 1172, 1325, 1540 |
| BseX3I | CGGCCG | 1 cut(s) | 202 |
| BseXI | GCAGC | 3 cut(s) | 790, 1400, 1476 |
| BseYI | CCCAGC | 2 cut(s) | 248, 1391 |
| Bsh1285I | CGRYCG | 1 cut(s) | 205 |
| BshFI | GGCC | 3 cut(s) | 204, 602, 1335 |
| BshVI | ATCGAT | 1 cut(s) | 927 |
| BsiEI | CGRYCG | 1 cut(s) | 205 |
| BsiHKCI | CYCGRG | 2 cut(s) | 434, 1522 |
| BsiSI | CCGG | 2 cut(s) | 1701, 1782 |
| BslFI | GGGAC | 2 cut(s) | 1116, 1817 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1392, 1507 |
| BsmAI | GTCTC | 1 cut(s) | 152 |
| BsmFI | GGGAC | 2 cut(s) | 1116, 1817 |
| BsnI | GGCC | 3 cut(s) | 204, 602, 1335 |
| Bso31I | GGTCTC | 1 cut(s) | 152 |
| BsoBI | CYCGRG | 2 cut(s) | 434, 1522 |
| Bsp1286I | GDGCHC | 1 cut(s) | 790 |
| Bsp143I | GATC | 5 cut(s) | 564, 924, 1240, 1246, 1548 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 672 |
| Bsp19I | CCATGG | 1 cut(s) | 1288 |
| BspACI | CCGC | 9 cut(s) | 46, 56, 139, 205, 294, 372, 392, 1386, 1786 |
| BspANI | GGCC | 3 cut(s) | 204, 602, 1335 |
| BspCNI | CTCAG | 3 cut(s) | 526, 685, 1197 |
| BspDI | ATCGAT | 1 cut(s) | 927 |
| BspHI | TCATGA | 2 cut(s) | 301, 378 |
| BspLI | GGNNCC | 1 cut(s) | 1455 |
| BspPI | GGATC | 2 cut(s) | 1235, 1241 |
| BspTNI | GGTCTC | 1 cut(s) | 152 |
| BsrDI | GCAATG | 2 cut(s) | 981, 998 |
| BsrI | ACTGG | 3 cut(s) | 1403, 1564, 1862 |
| BssECI | CCNNGG | 4 cut(s) | 142, 1288, 1330, 1523 |
| BssMI | GATC | 5 cut(s) | 564, 924, 1240, 1246, 1548 |
| BssT1I | CCWWGG | 2 cut(s) | 1288, 1330 |
| Bst2UI | CCWGG | 1 cut(s) | 1458 |
| Bst4CI | ACNGT | 8 cut(s) | 146, 220, 519, 751, 756, 1439, 1583, 1606 |
| Bst6I | CTCTTC | 1 cut(s) | 533 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 682 |
| BstC8I | GCNNGC | 3 cut(s) | 126, 392, 1668 |
| BstDEI | CTNAG | 5 cut(s) | 395, 534, 672, 1028, 1184 |
| BstDSI | CCRYGG | 2 cut(s) | 142, 1288 |
| BstEII | GGTNACC | 1 cut(s) | 25 |
| BstF5I | GGATG | 6 cut(s) | 273, 627, 687, 907, 1135, 1408 |
| BstKTI | GATC | 5 cut(s) | 567, 927, 1243, 1249, 1551 |
| BstMAI | GTCTC | 1 cut(s) | 152 |
| BstMBI | GATC | 5 cut(s) | 564, 924, 1240, 1246, 1548 |
| BstMCI | CGRYCG | 1 cut(s) | 205 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 682, 1527, 1848 |
| BstNI | CCWGG | 1 cut(s) | 1458 |
| BstPI | GGTNACC | 1 cut(s) | 25 |
| BstSCI | CCNGG | 3 cut(s) | 1456, 1699, 1781 |
| BstV1I | GCAGC | 3 cut(s) | 790, 1400, 1476 |
| BstV2I | GAAGAC | 2 cut(s) | 247, 290 |
| BstX2I | RGATCY | 1 cut(s) | 1240 |
| BstYI | RGATCY | 1 cut(s) | 1240 |
| BstZI | CGGCCG | 1 cut(s) | 202 |
| Bsu15I | ATCGAT | 1 cut(s) | 927 |
| BsuRI | GGCC | 3 cut(s) | 204, 602, 1335 |
| BsuTUI | ATCGAT | 1 cut(s) | 927 |
| BtgI | CCRYGG | 2 cut(s) | 142, 1288 |
| BtgZI | GCGATG | 1 cut(s) | 575 |
| BtsCI | GGATG | 6 cut(s) | 273, 627, 687, 907, 1135, 1408 |
| BtsIMutI | CAGTG | 2 cut(s) | 1444, 1571 |
| Cac8I | GCNNGC | 3 cut(s) | 126, 392, 1668 |
| CciI | TCATGA | 2 cut(s) | 301, 378 |
| Cfr13I | GGNCC | 3 cut(s) | 264, 601, 1422 |
| ClaI | ATCGAT | 1 cut(s) | 927 |
| CseI | GACGC | 1 cut(s) | 241 |
| Csp6I | GTAC | 2 cut(s) | 319, 752 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1458, 1493 |
| CviQI | GTAC | 2 cut(s) | 319, 752 |
| DdeI | CTNAG | 5 cut(s) | 395, 534, 672, 1028, 1184 |
| DpnI | GATC | 5 cut(s) | 566, 926, 1242, 1248, 1550 |
| DpnII | GATC | 5 cut(s) | 564, 924, 1240, 1246, 1548 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 218, 754 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 218, 754 |
| EaeI | YGGCCR | 2 cut(s) | 202, 1333 |
| EagI | CGGCCG | 1 cut(s) | 202 |
| Eam1104I | CTCTTC | 1 cut(s) | 533 |
| EarI | CTCTTC | 1 cut(s) | 533 |
| EciI | GGCGGA | 2 cut(s) | 128, 1801 |
| EclXI | CGGCCG | 1 cut(s) | 202 |
| Eco130I | CCWWGG | 2 cut(s) | 1288, 1330 |
| Eco24I | GRGCYC | 1 cut(s) | 790 |
| Eco31I | GGTCTC | 1 cut(s) | 152 |
| Eco47I | GGWCC | 2 cut(s) | 264, 1422 |
| Eco52I | CGGCCG | 1 cut(s) | 202 |
| Eco88I | CYCGRG | 2 cut(s) | 434, 1522 |
| Eco91I | GGTNACC | 1 cut(s) | 25 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1422 |
| EcoO65I | GGTNACC | 1 cut(s) | 25 |
| EcoRI | GAATTC | 2 cut(s) | 952, 1496 |
| EcoRII | CCWGG | 1 cut(s) | 1456 |
| EcoT14I | CCWWGG | 2 cut(s) | 1288, 1330 |
| EcoT22I | ATGCAT | 1 cut(s) | 1000 |
| EcoT38I | GRGCYC | 1 cut(s) | 790 |
| ErhI | CCWWGG | 2 cut(s) | 1288, 1330 |
| FaqI | GGGAC | 2 cut(s) | 1116, 1817 |
| FauI | CCCGC | 2 cut(s) | 63, 399 |
| FauNDI | CATATG | 1 cut(s) | 1213 |
| FbaI | TGATCA | 2 cut(s) | 564, 1548 |
| FblI | GTMKAC | 2 cut(s) | 1024, 1282 |
| Fnu4HI | GCNGC | 5 cut(s) | 205, 779, 1386, 1389, 1465 |
| FokI | GGATG | 6 cut(s) | 260, 634, 694, 914, 1142, 1415 |
| FriOI | GRGCYC | 1 cut(s) | 790 |
| Fsp4HI | GCNGC | 5 cut(s) | 205, 779, 1386, 1389, 1465 |
| GluI | GCNGC | 5 cut(s) | 205, 779, 1386, 1389, 1465 |
| GsaI | CCCAGC | 2 cut(s) | 252, 1395 |
| HaeIII | GGCC | 3 cut(s) | 204, 602, 1335 |
| HapII | CCGG | 2 cut(s) | 1701, 1782 |
| HgaI | GACGC | 1 cut(s) | 241 |
| HindIII | AAGCTT | 1 cut(s) | 1664 |
| HinfI | GANTC | 7 cut(s) | 72, 399, 443, 794, 835, 1284, 1444 |
| HpaII | CCGG | 2 cut(s) | 1701, 1782 |
| HphI | GGTGA | 6 cut(s) | 19, 35, 355, 506, 1429, 1811 |
| Hpy166II | GTNNAC | 2 cut(s) | 1025, 1283 |
| Hpy188I | TCNGA | 4 cut(s) | 404, 448, 1449, 1744 |
| Hpy188III | TCNNGA | 8 cut(s) | 262, 302, 379, 460, 791, 1225, 1244, 1353 |
| Hpy8I | GTNNAC | 2 cut(s) | 1025, 1283 |
| HpyAV | CCTTC | 7 cut(s) | 122, 140, 376, 928, 1063, 1120, 1444 |
| HpyCH4III | ACNGT | 8 cut(s) | 146, 220, 519, 751, 756, 1439, 1583, 1606 |
| HpyCH4IV | ACGT | 1 cut(s) | 939 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 682, 1527, 1848 |
| HpyF3I | CTNAG | 5 cut(s) | 395, 534, 672, 1028, 1184 |
| HpySE526I | ACGT | 1 cut(s) | 939 |
| Ksp22I | TGATCA | 2 cut(s) | 564, 1548 |
| Kzo9I | GATC | 5 cut(s) | 564, 924, 1240, 1246, 1548 |
| LmnI | GCTCC | 5 cut(s) | 183, 191, 1453, 1527, 1636 |
| Lsp1109I | GCAGC | 3 cut(s) | 790, 1400, 1476 |
| LweI | GCATC | 3 cut(s) | 672, 892, 985 |
| MaeII | ACGT | 1 cut(s) | 939 |
| MaeIII | GTNAC | 4 cut(s) | 25, 1292, 1583, 1756 |
| MalI | GATC | 5 cut(s) | 566, 926, 1242, 1248, 1550 |
| MboI | GATC | 5 cut(s) | 564, 924, 1240, 1246, 1548 |
| MboII | GAAGA | 9 cut(s) | 247, 250, 290, 550, 1162, 1217, 1246, 1358, 1801 |
| MfeI | CAATTG | 3 cut(s) | 63, 355, 1470 |
| MflI | RGATCY | 1 cut(s) | 1240 |
| MhlI | GDGCHC | 1 cut(s) | 790 |
| MlsI | TGGCCA | 1 cut(s) | 1335 |
| MluNI | TGGCCA | 1 cut(s) | 1335 |
| MlyI | GAGTC | 3 cut(s) | 66, 393, 1278 |
| MmeI | TCCRAC | 3 cut(s) | 205, 256, 626 |
| Mox20I | TGGCCA | 1 cut(s) | 1335 |
| Mph1103I | ATGCAT | 1 cut(s) | 1000 |
| MscI | TGGCCA | 1 cut(s) | 1335 |
| MseI | TTAA | 3 cut(s) | 174, 429, 732 |
| MslI | CAYNNNNRTG | 2 cut(s) | 282, 329 |
| Msp20I | TGGCCA | 1 cut(s) | 1335 |
| MspA1I | CMGCKG | 2 cut(s) | 374, 1391 |
| MspI | CCGG | 2 cut(s) | 1701, 1782 |
| MspR9I | CCNGG | 3 cut(s) | 1458, 1701, 1783 |
| MunI | CAATTG | 3 cut(s) | 63, 355, 1470 |
| MvaI | CCWGG | 1 cut(s) | 1458 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 682, 1527, 1848 |
| NciI | CCSGG | 2 cut(s) | 1701, 1783 |
| NcoI | CCATGG | 1 cut(s) | 1288 |
| NdeI | CATATG | 1 cut(s) | 1213 |
| NdeII | GATC | 5 cut(s) | 564, 924, 1240, 1246, 1548 |
| NlaIV | GGNNCC | 1 cut(s) | 1455 |
| NmeAIII | GCCGAG | 2 cut(s) | 180, 1016 |
| NmuCI | GTSAC | 2 cut(s) | 25, 1756 |
| NsiI | ATGCAT | 1 cut(s) | 1000 |
| PagI | TCATGA | 2 cut(s) | 301, 378 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 207 |
| PfeI | GAWTC | 4 cut(s) | 443, 794, 835, 1444 |
| PkrI | GCNGC | 5 cut(s) | 206, 780, 1387, 1390, 1466 |
| PleI | GAGTC | 3 cut(s) | 66, 393, 1278 |
| PpsI | GAGTC | 3 cut(s) | 66, 393, 1278 |
| PpuMI | RGGWCCY | 1 cut(s) | 1422 |
| Psp5II | RGGWCCY | 1 cut(s) | 1422 |
| Psp6I | CCWGG | 1 cut(s) | 1456 |
| PspEI | GGTNACC | 1 cut(s) | 25 |
| PspFI | CCCAGC | 2 cut(s) | 248, 1391 |
| PspGI | CCWGG | 1 cut(s) | 1456 |
| PspN4I | GGNNCC | 1 cut(s) | 1455 |
| PspPI | GGNCC | 3 cut(s) | 264, 601, 1422 |
| PspPPI | RGGWCCY | 1 cut(s) | 1422 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 735, 767 |
| PsuI | RGATCY | 1 cut(s) | 1240 |
| PvuII | CAGCTG | 1 cut(s) | 1391 |
| RsaI | GTAC | 2 cut(s) | 320, 753 |
| RsaNI | GTAC | 2 cut(s) | 319, 752 |
| RseI | CAYNNNNRTG | 2 cut(s) | 282, 329 |
| SaqAI | TTAA | 3 cut(s) | 174, 429, 732 |
| SatI | GCNGC | 5 cut(s) | 205, 779, 1386, 1389, 1465 |
| Sau3AI | GATC | 5 cut(s) | 564, 924, 1240, 1246, 1548 |
| Sau96I | GGNCC | 3 cut(s) | 264, 601, 1422 |
| SchI | GAGTC | 3 cut(s) | 66, 393, 1278 |
| ScrFI | CCNGG | 3 cut(s) | 1458, 1701, 1783 |
| SduI | GDGCHC | 1 cut(s) | 790 |
| SfaNI | GCATC | 3 cut(s) | 672, 892, 985 |
| SinI | GGWCC | 2 cut(s) | 264, 1422 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 282, 329 |
| SsiI | CCGC | 9 cut(s) | 46, 56, 139, 205, 294, 372, 392, 1386, 1786 |
| StyD4I | CCNGG | 3 cut(s) | 1456, 1699, 1781 |
| StyI | CCWWGG | 2 cut(s) | 1288, 1330 |
| TaaI | ACNGT | 8 cut(s) | 146, 220, 519, 751, 756, 1439, 1583, 1606 |
| TaiI | ACGT | 1 cut(s) | 942 |
| TaqI | TCGA | 5 cut(s) | 87, 210, 802, 927, 956 |
| TatI | WGTACW | 2 cut(s) | 318, 751 |
| TauI | GCSGC | 2 cut(s) | 207, 1388 |
| TfiI | GAWTC | 4 cut(s) | 443, 794, 835, 1444 |
| Tru1I | TTAA | 3 cut(s) | 174, 429, 732 |
| Tru9I | TTAA | 3 cut(s) | 174, 429, 732 |
| TscAI | CASTG | 2 cut(s) | 1444, 1571 |
| TseFI | GTSAC | 2 cut(s) | 25, 1756 |
| TseI | GCWGC | 3 cut(s) | 778, 1388, 1464 |
| Tsp45I | GTSAC | 2 cut(s) | 25, 1756 |
| TspGWI | ACGGA | 2 cut(s) | 996, 1721 |
| TspRI | CASTG | 2 cut(s) | 1444, 1571 |
| VpaK11BI | GGWCC | 2 cut(s) | 264, 1422 |
| XapI | RAATTY | 3 cut(s) | 952, 1348, 1496 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1829 |
| XmiI | GTMKAC | 2 cut(s) | 1024, 1282 |
| Zsp2I | ATGCAT | 1 cut(s) | 1000 |