Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0016600

Physical Location & Seq

Genomic Coordinates Reverse (-)

19828020 .. 19829900

Gene Structure 1881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1881 bp

ATGTCCTCAACCGCCACTTTGGCCACCACCGCACCCACTCACCACCACCACCACCACCGCCGCCGCCGCCACCCACCATCAATTGACAGACTCACATTCCTAATCGACAAGTCAAAATCCATCAACCACCTTCTCCAAACTCACGCCCTTCTCCTCCGCCACGGTCTCCACCACCACCCAATCCTGAACTTCAAGCTCCAACGCTCTTACGCCTCGTTTGGCCGCCTCGACCACTCCGTCGCCCTTTTCCACCGCACCGACAACCCCACTGTCTACTTCTGGACCTCCATTATCCACAGCCATGCCCAGTTGGGTCTTCAGAACCTTGCACTCATGTACTTCACCGAGATGCTCACCAATGGCGTTGAACCCAATTGCTTCACCTTCTCCGCTGTTATGAAAACTTGCCCGCTTGAGCCCGGAAAAGCACTCCATTCCCAGACGATTAAGCTCGGGTTCGATTCGGATTTGTATGTCAGGACCGGTCTTGTGGATGTTTACGCAAGAGCCGGCGATGTTGTGTCTGCAAGGCAGCTGTTTGATACAATGCCTGAGAAGAGTTTGGTTTCGCTGACGGCGATGATCACTAGCTATGTGAAAAGAGGGGCAATTGAGGCGGCCCGCAAACTGTTTGACGGAATGCAGGAGAGAGATGTGGTGTGTTGGAATGTGATGATTGATGGGTATGCTCAGCATGGGATGCCAAATGAGGCTTTGTTTTTGTTTAGGAAAATGCTGGCGGCAAAGTTTAAGCCAAACGAATTGACGGTGCTGTCTTTGCTCTCTGCTTGTGGGCAGCTTGGAGCTCTTGAGTCTGGTCGATGGCTTCATTCTTACATTGAAAATAATCGAATTCTAGTCAATGCTCATGTGGGCACTGCATTGATTGACATGTATAGTAAATGTGGTAGCTTGGAGGATGCTCGTCTGGTTTTTGATAGGATTGAGGAGAAGGACGTTGTTGTTTGGAATTCGATGGTTGTAGGATATGCGATGCACGGATTTAGCCAAGATGCGTTGCAGTTGTTCGTTGAAATGCGTAGAATTGGTTACCATCCTACTGATATAACCTTCATCGGAGTTTTGAGTGCTTGTGCTTATGCTGGTTTGGTCAACAAGGGACGGGCTTTTTTCAGTTCAATGAAGGATGAATACGGAATAGAACCGAAGATTGAGCATTATGGGTGCATGGTAAATCTCCTTAGCCGTGCTGGGCAGCTGGAAGAAGCATACGAGTTTGTGAAGAAAATGAAGATTGATCCTGATCCCGTCCTATGGGGAACTTTACTTGGGGCTTGTAGACTCCATGGTAACATTGCATTGGGAGAGGAGATAGCAGAGTTTCTCCTTGGCCAAAATCTTGCAAATTCAGGAACATATATTCTACTTTCCAACATCTACGCCACAGTGGGGAACTGGGATGGGGTGGCAAGGGTGAGGGCCTTGATGAAAAGCAGTGGGATTCATAAGGAGCCTGGTTGCAGCTCCATCGAAGTGGATAATAAGGTACACGAGTTCCTTGCAGGGGATAGGAGAAACCCGAGGAGCAAAGAAATATACACGATGATCGAGGAGATGAACCGTTGGCTCAAGGCTCATGGTTACGCCCCACAGGTAGATACTGTGTTACATGATCTGGGGGACAAAGAAAAGGAGCAATCCCTTGAAGTTCACAGTGAGAAGCTTGCTCTTGCTTTGGGGCTAATCAGCACACAAGCTGGAACAACAATCAAAATTGTGAAAAACCTACGCGTGTGTTCGGATTGTCACGCTGTGACCAAGTTACTTTCGAAAACCACTGGCCGAAAGATTGTAATGCGGGACAGAAACAGGTTTCACCACTTTGTAAATGGTTCGTGCTCTTGTGGCGATTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

627

Amino Acids

70.33

Weight (kDa)

8.54

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	89 - 136	1.5e-07	PPR repeat family
PPR_3	PF13812	90 - 136	1e-05	Pentatricopeptide repeat domain
PPR_2	PF13041	217 - 264	2.7e-11	PPR repeat family
PPR	PF01535	220 - 247	2.4e-08	PPR repeat
PPR_2	PF13041	318 - 366	1.2e-07	PPR repeat family
PPR	PF01535	321 - 350	3.5e-06	PPR repeat
E_motif	PF20431	436 - 498	7.5e-20	E motif
DYW_deaminase	PF14432	534 - 626	6.7e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37380
fragaria_vesca	FvH4_1g16950
malus_domestica	MD15G1290500.v1.1
prunus_persica	Prupe.6G226400_v2.0.a1
pyrus_communis	pycom15g25420
rosa_chinensis	RchiOBHm_Chr2g0107031
rosa_laevigata	RLG00000017551
rosa_multiflora	Rmu_sc0007106.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136670
rosa_rugosa	Rorug02G0140000
rosa_samantha	Rh2BG202400 Rh2CG195600 Rh2DG197900
rosa_wichuraiana	Rw2G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	236, 772
AccI	GTMKAC	2 cut(s)	273, 1300
AccII	CGCG	1 cut(s)	1752
AclWI	GGATC	2 cut(s)	1253, 1259
AcoI	YGGCCR	4 cut(s)	21, 220, 1351, 1801
AcsI	RAATTY	3 cut(s)	852, 970, 1366
AcuI	CTGAAG	1 cut(s)	302
AdeI	CACNNNGTG	1 cut(s)	1774
AfaI	GTAC	2 cut(s)	338, 1509
AfiI	CCNNNNNNNGG	3 cut(s)	1275, 1410, 1525
AflIII	ACRYGT	2 cut(s)	891, 1750
AgeI	ACCGGT	1 cut(s)	482
AgsI	TTSAA	6 cut(s)	193, 368, 842, 1034, 1140, 1667
AjnI	CCWGG	1 cut(s)	1474
Alw21I	GWGCWC	2 cut(s)	808, 1862
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	2 cut(s)	1253, 1259
Ama87I	CYCGRG	2 cut(s)	452, 1540
AoxI	GGCC	6 cut(s)	21, 220, 618, 1351, 1440, 1801
ApeKI	GCWGC	4 cut(s)	532, 796, 1216, 1482
ApoI	RAATTY	3 cut(s)	852, 970, 1366
AsiGI	ACCGGT	1 cut(s)	482
AspS9I	GGNCC	4 cut(s)	282, 480, 619, 1440
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	6 cut(s)	32, 334, 346, 373, 1447, 1829
AsuII	TTCGAA	1 cut(s)	1790
AvaI	CYCGRG	2 cut(s)	452, 1540
AvaII	GGWCC	2 cut(s)	282, 480
BaeGI	GKGCMC	1 cut(s)	878
BaeI	ACNNNNGTAYC	2 cut(s)	1499, 1532
BalI	TGGCCA	2 cut(s)	23, 1353
BanII	GRGCYC	2 cut(s)	420, 808
BarI	GAAGNNNNNNTAC	2 cut(s)	1136, 1168
BauI	CACGAG	1 cut(s)	1511
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	808, 1862
BbvI	GCAGC	4 cut(s)	544, 808, 1228, 1494
BccI	CCATC	8 cut(s)	85, 128, 674, 816, 970, 1062, 1415, 1496
BceAI	ACGGC	2 cut(s)	591, 1191
BcgI	CGANNNNNNTGC	4 cut(s)	1471, 1502, 1505, 1536
BciT130I	CCWGG	1 cut(s)	1476
BclI	TGATCA	1 cut(s)	582
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	2 cut(s)	588, 857
BglI	GCCNNNNNGGC	1 cut(s)	20
BlpI	GCTNAGC	1 cut(s)	690
Bme1390I	CCNGG	2 cut(s)	420, 1476
Bme18I	GGWCC	2 cut(s)	282, 480
BmeT110I	CYCGRG	2 cut(s)	452, 1540
BmgT120I	GGNCC	4 cut(s)	282, 480, 619, 1440
BmiI	GGNNCC	1 cut(s)	1473
BmrFI	CCNGG	2 cut(s)	420, 1476
BmrI	ACTGGG	2 cut(s)	301, 1426
BmsI	GCATC	5 cut(s)	339, 690, 910, 984, 1003
BmuI	ACTGGG	2 cut(s)	301, 1426
BpiI	GAAGAC	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	1202
Bpu1102I	GCTNAGC	1 cut(s)	690
Bpu14I	TTCGAA	1 cut(s)	1790
BpuEI	CTTGAG	3 cut(s)	434, 830, 1574
BpuMI	CCSGG	1 cut(s)	420
BsaBI	GATNNNNATC	1 cut(s)	1263
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	4 cut(s)	160, 1306, 1348, 1541
BsaWI	WCCGGW	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	3 cut(s)	1275, 1410, 1525
Bse118I	RCCGGY	2 cut(s)	482, 509
Bse1I	ACTGG	4 cut(s)	307, 1421, 1804, 1880
Bse3DI	GCAATG	1 cut(s)	1314
Bse8I	GATNNNNATC	1 cut(s)	1263
BseBI	CCWGG	1 cut(s)	1476
BseDI	CCNNGG	4 cut(s)	160, 1306, 1348, 1541
BseGI	GGATG	6 cut(s)	499, 705, 925, 1054, 1153, 1426
BseJI	GATNNNNATC	1 cut(s)	1263
BseLI	CCNNNNNNNGG	3 cut(s)	1275, 1410, 1525
BseMI	GCAATG	1 cut(s)	1314
BseMII	CTCAG	2 cut(s)	543, 704
BseNI	ACTGG	4 cut(s)	307, 1421, 1804, 1880
BseRI	GAGGAG	5 cut(s)	143, 962, 1343, 1558, 1586
BseSI	GKGCMC	1 cut(s)	878
BseXI	GCAGC	4 cut(s)	544, 808, 1228, 1494
BseYI	CCCAGC	1 cut(s)	1211
Bsh1236I	CGCG	1 cut(s)	1752
BshFI	GGCC	6 cut(s)	23, 222, 620, 1353, 1442, 1803
BshTI	ACCGGT	1 cut(s)	482
BsiHKAI	GWGCWC	2 cut(s)	808, 1862
BsiHKCI	CYCGRG	2 cut(s)	452, 1540
BsiSI	CCGG	3 cut(s)	420, 483, 510
BslFI	GGGAC	3 cut(s)	1134, 1655, 1835
BslI	CCNNNNNNNGG	3 cut(s)	1275, 1410, 1525
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	3 cut(s)	1134, 1655, 1835
BsmI	GAATGC	1 cut(s)	645
BsnI	GGCC	6 cut(s)	23, 222, 620, 1353, 1442, 1803
Bso31I	GGTCTC	1 cut(s)	170
BsoBI	CYCGRG	2 cut(s)	452, 1540
Bsp119I	TTCGAA	1 cut(s)	1790
Bsp1286I	GDGCHC	4 cut(s)	420, 808, 878, 1862
Bsp143I	GATC	5 cut(s)	582, 1258, 1264, 1566, 1633
Bsp1720I	GCTNAGC	1 cut(s)	690
Bsp19I	CCATGG	1 cut(s)	1306
BspANI	GGCC	6 cut(s)	23, 222, 620, 1353, 1442, 1803
BspCNI	CTCAG	2 cut(s)	544, 703
BspFNI	CGCG	1 cut(s)	1752
BspLI	GGNNCC	1 cut(s)	1473
BspPI	GGATC	2 cut(s)	1253, 1259
BspT104I	TTCGAA	1 cut(s)	1790
BspTNI	GGTCTC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	1314
BsrFI	RCCGGY	2 cut(s)	482, 509
BsrI	ACTGG	4 cut(s)	307, 1421, 1804, 1880
BssAI	RCCGGY	2 cut(s)	482, 509
BssECI	CCNNGG	4 cut(s)	160, 1306, 1348, 1541
BssMI	GATC	5 cut(s)	582, 1258, 1264, 1566, 1633
BssSI	CACGAG	1 cut(s)	1511
BssT1I	CCWWGG	2 cut(s)	1306, 1348
Bst2BI	CACGAG	1 cut(s)	1511
Bst2UI	CCWGG	1 cut(s)	1476
Bst4CI	ACNGT	8 cut(s)	164, 271, 630, 769, 1408, 1583, 1624, 1676
Bst6I	CTCTTC	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	700
BstBI	TTCGAA	1 cut(s)	1790
BstC8I	GCNNGC	5 cut(s)	410, 511, 622, 738, 1686
BstDEI	CTNAG	3 cut(s)	552, 690, 1202
BstDSI	CCRYGG	2 cut(s)	160, 1306
BstEII	GGTNACC	1 cut(s)	1049
BstF5I	GGATG	6 cut(s)	499, 705, 925, 1054, 1153, 1426
BstFNI	CGCG	1 cut(s)	1752
BstKTI	GATC	5 cut(s)	585, 1261, 1267, 1569, 1636
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	5 cut(s)	582, 1258, 1264, 1566, 1633
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 29, 66, 614, 700, 778, 1866
BstNI	CCWGG	1 cut(s)	1476
BstNSI	RCATGY	1 cut(s)	895
BstPI	GGTNACC	1 cut(s)	1049
BstSCI	CCNGG	2 cut(s)	418, 1474
BstSLI	GKGCMC	1 cut(s)	878
BstUI	CGCG	1 cut(s)	1752
BstV1I	GCAGC	4 cut(s)	544, 808, 1228, 1494
BstV2I	GAAGAC	1 cut(s)	308
BstXI	CCANNNNNNTGG	1 cut(s)	1495
BsuRI	GGCC	6 cut(s)	23, 222, 620, 1353, 1442, 1803
BtgI	CCRYGG	2 cut(s)	160, 1306
BtgZI	GCGATG	3 cut(s)	528, 593, 1007
BtsCI	GGATG	6 cut(s)	499, 705, 925, 1054, 1153, 1426
BtsI	GCAGTG	2 cut(s)	876, 1462
BtsIMutI	CAGTG	6 cut(s)	267, 876, 1413, 1462, 1681, 1797
Cac8I	GCNNGC	5 cut(s)	410, 511, 622, 738, 1686
Cfr10I	RCCGGY	2 cut(s)	482, 509
Cfr13I	GGNCC	4 cut(s)	282, 480, 619, 1440
Csp6I	GTAC	2 cut(s)	337, 1508
CspAI	ACCGGT	1 cut(s)	482
CviAII	CATG	9 cut(s)	302, 334, 695, 869, 892, 1189, 1307, 1598, 1631
CviQI	GTAC	2 cut(s)	337, 1508
DdeI	CTNAG	3 cut(s)	552, 690, 1202
DpnI	GATC	5 cut(s)	584, 1260, 1266, 1568, 1635
DpnII	GATC	5 cut(s)	582, 1258, 1264, 1566, 1633
DraIII	CACNNNGTG	1 cut(s)	1774
DrdI	GACNNNNNNGTC	2 cut(s)	236, 772
DseDI	GACNNNNNNGTC	2 cut(s)	236, 772
EaeI	YGGCCR	4 cut(s)	21, 220, 1351, 1801
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
EciI	GGCGGA	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	806
Eco130I	CCWWGG	2 cut(s)	1306, 1348
Eco24I	GRGCYC	2 cut(s)	420, 808
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	2 cut(s)	282, 480
Eco53kI	GAGCTC	1 cut(s)	806
Eco57I	CTGAAG	1 cut(s)	302
Eco88I	CYCGRG	2 cut(s)	452, 1540
Eco91I	GGTNACC	1 cut(s)	1049
EcoICRI	GAGCTC	1 cut(s)	806
EcoO109I	RGGNCCY	1 cut(s)	1440
EcoO65I	GGTNACC	1 cut(s)	1049
EcoRI	GAATTC	2 cut(s)	852, 970
EcoRII	CCWGG	1 cut(s)	1474
EcoT14I	CCWWGG	2 cut(s)	1306, 1348
EcoT38I	GRGCYC	2 cut(s)	420, 808
ErhI	CCWWGG	2 cut(s)	1306, 1348
FaeI	CATG	9 cut(s)	305, 337, 698, 872, 895, 1192, 1310, 1601, 1634
FaqI	GGGAC	3 cut(s)	1134, 1655, 1835
FatI	CATG	9 cut(s)	301, 333, 694, 868, 891, 1188, 1306, 1597, 1630
FauI	CCCGC	3 cut(s)	417, 629, 1812
FbaI	TGATCA	1 cut(s)	582
FblI	GTMKAC	2 cut(s)	273, 1300
FokI	GGATG	6 cut(s)	506, 712, 932, 1041, 1160, 1433
FriOI	GRGCYC	2 cut(s)	420, 808
FspBI	CTAG	2 cut(s)	588, 857
GsaI	CCCAGC	1 cut(s)	1215
HaeIII	GGCC	6 cut(s)	23, 222, 620, 1353, 1442, 1803
HapII	CCGG	3 cut(s)	420, 483, 510
Hin1II	CATG	9 cut(s)	305, 337, 698, 872, 895, 1192, 1310, 1601, 1634
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HindIII	AAGCTT	1 cut(s)	1682
HinfI	GANTC	5 cut(s)	90, 461, 812, 1302, 1462
HpaII	CCGG	3 cut(s)	420, 483, 510
HphI	GGTGA	6 cut(s)	32, 334, 346, 373, 1447, 1829
Hpy166II	GTNNAC	6 cut(s)	274, 499, 1114, 1301, 1510, 1672
Hpy188I	TCNGA	4 cut(s)	321, 466, 1079, 1762
Hpy188III	TCNNGA	6 cut(s)	184, 280, 478, 809, 1262, 1371
Hpy8I	GTNNAC	6 cut(s)	274, 499, 1114, 1301, 1510, 1672
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	6 cut(s)	140, 158, 394, 946, 1081, 1138
HpyCH4III	ACNGT	8 cut(s)	164, 271, 630, 769, 1408, 1583, 1624, 1676
HpyCH4IV	ACGT	1 cut(s)	957
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 29, 66, 614, 700, 778, 1866
HpyF3I	CTNAG	3 cut(s)	552, 690, 1202
HpySE526I	ACGT	1 cut(s)	957
Hsp92II	CATG	9 cut(s)	305, 337, 698, 872, 895, 1192, 1310, 1601, 1634
KroI	GCCGGC	1 cut(s)	509
KroNI	GCCGGC	1 cut(s)	511
Ksp22I	TGATCA	1 cut(s)	582
Kzo9I	GATC	5 cut(s)	582, 1258, 1264, 1566, 1633
LmnI	GCTCC	6 cut(s)	201, 803, 1471, 1490, 1545, 1654
Lsp1109I	GCAGC	4 cut(s)	544, 808, 1228, 1494
LweI	GCATC	5 cut(s)	339, 690, 910, 984, 1003
MaeI	CTAG	2 cut(s)	588, 857
MaeII	ACGT	1 cut(s)	957
MaeIII	GTNAC	7 cut(s)	1049, 1310, 1601, 1626, 1766, 1774, 1782
MalI	GATC	5 cut(s)	584, 1260, 1266, 1568, 1635
MboI	GATC	5 cut(s)	582, 1258, 1264, 1566, 1633
MboII	GAAGA	6 cut(s)	308, 568, 1180, 1235, 1255, 1264
MfeI	CAATTG	3 cut(s)	81, 373, 609
MhlI	GDGCHC	4 cut(s)	420, 808, 878, 1862
MlsI	TGGCCA	2 cut(s)	23, 1353
MluCI	AATT	9 cut(s)	81, 373, 609, 761, 852, 970, 1044, 1366, 1734
MluI	ACGCGT	1 cut(s)	1750
MluNI	TGGCCA	2 cut(s)	23, 1353
MlyI	GAGTC	3 cut(s)	84, 821, 1296
MmeI	TCCRAC	3 cut(s)	223, 644, 1416
Mox20I	TGGCCA	2 cut(s)	23, 1353
MroNI	GCCGGC	1 cut(s)	509
MscI	TGGCCA	2 cut(s)	23, 1353
MseI	TTAA	2 cut(s)	447, 750
MslI	CAYNNNNRTG	3 cut(s)	300, 347, 1493
Msp20I	TGGCCA	2 cut(s)	23, 1353
MspA1I	CMGCKG	3 cut(s)	392, 535, 1219
MspI	CCGG	3 cut(s)	420, 483, 510
MspR9I	CCNGG	2 cut(s)	420, 1476
MunI	CAATTG	3 cut(s)	81, 373, 609
Mva1269I	GAATGC	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	1476
MvnI	CGCG	1 cut(s)	1752
MwoI	GCNNNNNNNGC	7 cut(s)	20, 29, 66, 614, 700, 778, 1866
NaeI	GCCGGC	1 cut(s)	511
NciI	CCSGG	1 cut(s)	420
NcoI	CCATGG	1 cut(s)	1306
NdeII	GATC	5 cut(s)	582, 1258, 1264, 1566, 1633
NgoMIV	GCCGGC	1 cut(s)	509
NlaIII	CATG	9 cut(s)	305, 337, 698, 872, 895, 1192, 1310, 1601, 1634
NlaIV	GGNNCC	1 cut(s)	1473
NmuCI	GTSAC	2 cut(s)	1766, 1774
NspI	RCATGY	1 cut(s)	895
NspV	TTCGAA	1 cut(s)	1790
PciI	ACATGT	1 cut(s)	891
PcsI	WCGNNNNNNNCGW	2 cut(s)	234, 575
PctI	GAATGC	1 cut(s)	645
PdiI	GCCGGC	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	461, 1462
PinAI	ACCGGT	1 cut(s)	482
PleI	GAGTC	3 cut(s)	84, 820, 1296
PpsI	GAGTC	3 cut(s)	84, 820, 1296
PscI	ACATGT	1 cut(s)	891
Psp124BI	GAGCTC	1 cut(s)	808
Psp6I	CCWGG	1 cut(s)	1474
PspEI	GGTNACC	1 cut(s)	1049
PspFI	CCCAGC	1 cut(s)	1211
PspGI	CCWGG	1 cut(s)	1474
PspN4I	GGNNCC	1 cut(s)	1473
PspPI	GGNCC	4 cut(s)	282, 480, 619, 1440
PvuII	CAGCTG	2 cut(s)	535, 1219
RsaI	GTAC	2 cut(s)	338, 1509
RsaNI	GTAC	2 cut(s)	337, 1508
RseI	CAYNNNNRTG	3 cut(s)	300, 347, 1493
SacI	GAGCTC	1 cut(s)	808
SaqAI	TTAA	2 cut(s)	447, 750
Sau3AI	GATC	5 cut(s)	582, 1258, 1264, 1566, 1633
Sau96I	GGNCC	4 cut(s)	282, 480, 619, 1440
SchI	GAGTC	3 cut(s)	84, 821, 1296
ScrFI	CCNGG	2 cut(s)	420, 1476
SduI	GDGCHC	4 cut(s)	420, 808, 878, 1862
SfaNI	GCATC	5 cut(s)	339, 690, 910, 984, 1003
SfuI	TTCGAA	1 cut(s)	1790
SinI	GGWCC	2 cut(s)	282, 480
SmiMI	CAYNNNNRTG	3 cut(s)	300, 347, 1493
SmlI	CTYRAG	3 cut(s)	413, 809, 1589
SmoI	CTYRAG	3 cut(s)	413, 809, 1589
Sse9I	AATT	9 cut(s)	81, 373, 609, 761, 852, 970, 1044, 1366, 1734
SspMI	CTAG	2 cut(s)	588, 857
SstI	GAGCTC	1 cut(s)	808
StyD4I	CCNGG	2 cut(s)	418, 1474
StyI	CCWWGG	2 cut(s)	1306, 1348
TaaI	ACNGT	8 cut(s)	164, 271, 630, 769, 1408, 1583, 1624, 1676
TaiI	ACGT	1 cut(s)	960
TaqI	TCGA	9 cut(s)	105, 228, 459, 820, 850, 974, 1491, 1569, 1790
TasI	AATT	9 cut(s)	81, 373, 609, 761, 852, 970, 1044, 1366, 1734
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	6 cut(s)	63, 66, 69, 225, 620, 743
TfiI	GAWTC	2 cut(s)	461, 1462
Tru1I	TTAA	2 cut(s)	447, 750
Tru9I	TTAA	2 cut(s)	447, 750
TscAI	CASTG	6 cut(s)	274, 883, 1413, 1462, 1681, 1804
TseFI	GTSAC	2 cut(s)	1766, 1774
TseI	GCWGC	4 cut(s)	532, 796, 1216, 1482
Tsp45I	GTSAC	2 cut(s)	1766, 1774
TspDTI	ATGAA	9 cut(s)	413, 818, 1063, 1157, 1164, 1265, 1454, 1463, 1592
TspGWI	ACGGA	4 cut(s)	226, 651, 1014, 1170
TspRI	CASTG	6 cut(s)	274, 883, 1413, 1462, 1681, 1804
VpaK11BI	GGWCC	2 cut(s)	282, 480
XapI	RAATTY	3 cut(s)	852, 970, 1366
XceI	RCATGY	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1847
XmiI	GTMKAC	2 cut(s)	273, 1300
XspI	CTAG	2 cut(s)	588, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.