Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003410

Physical Location & Seq

Genomic Coordinates Forward (+)

12324244 .. 12326615

Gene Structure 2372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0140000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAAAGGTCTCAAGTCTGCAACCGTCGCGAGCAAGAAGCCTGTTGCTGAGTTGCTGGGAGCCAAGGCTGAACCAAAAAAGACGATGAAGAAGGAGAAAGTTCAGAAAGTAAGCAAGAAGAAGGATGCTGATGCTCCGAAGCGTCCAGCTGGAGCCTTCTTCATCTTCATGGAGGAGTTCCGCAAGAGCTTCAAACTGGAGTTTCCTGATGTAAAATCTGGACCGGCTGTTGGGAAAGCTGGTGGTGAGAAATGGAAGTCACTGTCTGCTACTGAAAAAGCTCCCTATGTCGAAAAAGCTTCAAAGAGGAAGGCAGAGTATGAAATAGCTATGCAGGAATATGAGAAGAAGAAGCTGAATTGCAATGCGGATGCTGAAAAGTCAGTGGTGACAGAGAAATCGGCTTCAGCTTGTGAGATCCATGATGATGAAGCGGGGCAGGAAGTGAGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

151

Amino Acids

16.56

Weight (kDa)

9.4

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box	PF00505	46 - 115	1.3e-20	HMG (high mobility group) box
HMG_box_2	PF09011	46 - 114	1.1e-10	HMG-box domain
HMG_WDHD1	PF24815	49 - 99	3.4e-11	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0003410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67320
fragaria_vesca	FvH4_1g16940 FvH4_2g33540 FvH4_2g33540 FvH4_2g33540 FvH4_2g33540 FvH4_2g33540
malus_domestica	MD02G1179800.v1.1 MD15G1075300.v1.1 MD15G1290400.v1.1
prunus_persica	Prupe.1G428200_v2.0.a1 Prupe.1G428200_v2.0.a1 Prupe.6G226500_v2.0.a1 Prupe.6G226500_v2.0.a1
pyrus_communis	pycom02g14570 pycom15g07030 pycom15g25410
rosa_chinensis	RchiOBHm_Chr2g0107021 RchiOBHm_Chr6g0308951
rosa_laevigata	RLG00000010601 RLG00000017550
rosa_multiflora	Rmu_sc0007106.1_g000002 Rmu_sc0030997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136680 Rroxscaffold_7G00159780
rosa_rugosa	Rorug02G0140000
rosa_samantha	Rh2AG190800 Rh2BG202300 Rh2CG195500 Rh2DG197800 Rh6AG481200 Rh6BG490300 Rh6CG495600 Rh6DG481500
rosa_wichuraiana	Rw2G015040 Rw6G041920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	29
AciI	CCGC	3 cut(s)	181, 368, 434
AclWI	GGATC	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	390
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	193, 303
AluBI	AGCT	9 cut(s)	149, 189, 239, 281, 299, 329, 355, 410, 450
AluI	AGCT	9 cut(s)	149, 189, 239, 281, 299, 329, 355, 410, 450
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	412
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	2 cut(s)	257, 400
AvaII	GGWCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	61, 154
BmsI	GCATC	3 cut(s)	115, 121, 361
BpmI	CTGGAG	2 cut(s)	171, 218
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	370
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	130, 376
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	14
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	1 cut(s)	417
Bsp68I	TCGCGA	1 cut(s)	29
BspACI	CCGC	3 cut(s)	181, 368, 434
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	61, 154
BspPI	GGATC	1 cut(s)	412
BspTNI	GGTCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	370
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	417
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	2 cut(s)	25, 264
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	48, 453
BstF5I	GGATG	2 cut(s)	130, 376
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	1 cut(s)	420
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	417
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstUI	CGCG	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	130, 376
BtsIMutI	CAGTG	2 cut(s)	260, 390
BtuMI	TCGCGA	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	1 cut(s)	131
CviAII	CATG	2 cut(s)	169, 422
DdeI	CTNAG	2 cut(s)	48, 453
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	172, 425
FaiI	YATR	6 cut(s)	170, 288, 321, 332, 342, 423
FatI	CATG	2 cut(s)	168, 421
FauI	CCCGC	1 cut(s)	427
FokI	GGATG	2 cut(s)	137, 383
FriOI	GRGCYC	1 cut(s)	452
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	2 cut(s)	171, 218
HapII	CCGG	1 cut(s)	224
HgaI	GACGC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	172, 425
HindIII	AAGCTT	1 cut(s)	297
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	2 cut(s)	257, 400
Hpy188I	TCNGA	2 cut(s)	105, 138
Hpy188III	TCNNGA	3 cut(s)	28, 206, 219
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	4 cut(s)	85, 115, 166, 304
HpyCH4III	ACNGT	2 cut(s)	25, 264
HpyCH4V	TGCA	3 cut(s)	20, 334, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	48, 453
Hsp92II	CATG	2 cut(s)	172, 425
Kzo9I	GATC	1 cut(s)	417
LmnI	GCTCC	4 cut(s)	59, 139, 152, 286
LweI	GCATC	3 cut(s)	115, 121, 361
MaeIII	GTNAC	2 cut(s)	258, 388
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MboII	GAAGA	6 cut(s)	100, 130, 151, 157, 358, 361
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	452
MluCI	AATT	1 cut(s)	358
MnlI	CCTC	2 cut(s)	166, 300
MslI	CAYNNNNRTG	2 cut(s)	167, 426
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	26
NdeII	GATC	1 cut(s)	417
NlaIII	CATG	2 cut(s)	172, 425
NlaIV	GGNNCC	2 cut(s)	61, 154
NmuCI	GTSAC	2 cut(s)	258, 388
NruI	TCGCGA	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	452
PspFI	CCCAGC	1 cut(s)	55
PspN4I	GGNNCC	2 cut(s)	61, 154
PspPI	GGNCC	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	417
PvuII	CAGCTG	1 cut(s)	149
RruI	TCGCGA	1 cut(s)	29
RseI	CAYNNNNRTG	2 cut(s)	167, 426
SacI	GAGCTC	1 cut(s)	452
Sau3AI	GATC	1 cut(s)	417
Sau96I	GGNCC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	3 cut(s)	115, 121, 361
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	167, 426
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	3 cut(s)	181, 368, 434
SstI	GAGCTC	1 cut(s)	452
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	25, 264
TaqI	TCGA	1 cut(s)	291
TasI	AATT	1 cut(s)	358
TscAI	CASTG	2 cut(s)	267, 390
TseFI	GTSAC	2 cut(s)	258, 388
Tsp45I	GTSAC	2 cut(s)	258, 388
TspDTI	ATGAA	6 cut(s)	17, 101, 151, 157, 336, 444
TspRI	CASTG	2 cut(s)	267, 390
VpaK11BI	GGWCC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.