Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0003410

Physical Location & Seq

Genomic Coordinates Forward (+)

9795720 .. 9802721

Gene Structure 7002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1716 bp

ATGACCTCCATCACCTCCGTCGAGCTCAATTTCCTCGTTTTCCGTTATCTTCAGGAATCAGGTTTCACACACTCAGCTTTTGCTCTAGGATATGAGGCTGGTATTAACAAATGCACTATCGATGGAAATTTGATTCCACCCGGTGCTCTCATTACATTTGTTCAAAAAGGACTTCAGTACTTGGAGATGGAAGCCAACTTGAACAATAGTGATGCGGAGGTGGATGAAGATTTCTCGCTTTTACAACCTTTAGATCTTATCCAAAATGATGTTAATCAACTACGCCAATTGATAAAAGATAGAAAGAAAAATTTGCAGAAGGATAGAGATAAGGACAAAGAACTTGAGAAAGAGAAAGAACATGAAGGAGAGCGAGAGCGAGAGCGCACGCGAGTAAGAGAGAAGGAAAGACTTGAGAGGGAGAAAGAATTTGAAAAGAGCAGAGAGAGGGTAGAAAAGAATAAGGAGGTAGAAAAGAACAAGGAGCAAGAAAAGCATCACAAGGACCATAGCGATAGAGATAGGGTTACAGAACTGGAAGAAAGAGTCCATGTCAAACATGAAGAAAATGGAGCGTCTGAAGCGGAACCAATGGATATCTTGACAGCTCCAACATCCCAGGCATGTGAAATCCCTAGTTCTGATGTGACCATTTTAGAAGGCCATACATCTGAGGTATGTGCTTGCGCTTGGAGTCCAACTGGATCTCTTCTTGCATCTGGGTCTGGAGATTCTACCGCTCGCATTTGGCCAATTCCAGATGGAAGCTCTAGATCTGGTTTACAAAATGGTGCCTTAAATGTGTTGGTGCTGAAGCATGTTAGGGGTAGAACAAATGAAAAGAGTAAAGATGTCACGACTCTTGATTGGAATGGAGAGGGAACACTACTTGCAACTGGCTCATATGATGGGCAAGCACGAATTTGGACTACAAATGGTGAACTAAGGAGTACTTTGAACAAACATAAAGGACCCATATTCTCTCTAAAGTGGAACAAGAAAGGAGATTATCTGCTTACAGGAAGCTGTGATAAAACTGCAATTGTGTGGGATGTGAAGGCAGAGGAAGTGAAGCAACAATTTGAGTTTCATTCAGGTCCAACACTTGATGTTGACTGGCGCAACAATATGTCATTTGCAATGAGCTCCACAGACAATATGATATATGTTTGCAAGATTGGGGAAACTTGCCCTATTAAAACTTTTGCAGGACATCAAGGTGAAGTTAATTGTGTGAAATGGGATCCAACTGGCACGCTGTTGGCTTCGTGTTCAGATGATATCAGTGCAAAGATATGGAGCATGAAGCAGGAAAAGTATGTTCATGATTTAAGAGAGCATTCTAAGGAGATATACACTATCAGATGGAGTCCAACGGGACCAGGAACAAACAACCCTAATCAGCAGTTGGTTCTTGCAAGTGCGTCATTTGACTCTACTGTAAAGCTATGGGATGTTGAACTAGGAAAACTTCTCTACAGCCTGAATGGACACAGAGATCCTGTTTATTCTGTCGCCTTTAGCCCAAATGGCGAGTATTTGGCCAGTGGATCTCTTGATAAATCAATGCATATCTGGTCACTAAAAGAAGGCAAGATTGTGAAGACATACACCGGCAATGGCGGTATATTTGAAGTTTGCTGGAATAAGGAAGGTGACAAAATTGCTGCATGTTTTGCCAACAATACAGTTTGTGTTTTGGATTTCAGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000151 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0098732 GO:0140110 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04310 map04013 map04310

Pfam Domains

Protein Families

LisH WD40

Protein Analysis

572

Amino Acids

64.35

Weight (kDa)

5.59

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH	PF08513	8 - 33	9.8e-08	LisH
WD40_CDC20-Fz	PF24807	214 - 253	1.2e-07	CDC20/Fizzy WD40 domain
WD40	PF00400	216 - 250	2.3e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	216 - 323	1.4e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5	PF25175	216 - 309	3.5e-12	WDR5 beta-propeller domain
Beta-prop_EML	PF23409	219 - 388	7.5e-10	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3	PF25174	222 - 254	3.7e-06	THOC3 beta-propeller domain
Beta-prop_EML_2	PF23414	261 - 356	7.5e-08	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_IFT140_1st	PF23383	273 - 354	4.9e-06	IFT140 first beta-propeller
WD40_Prp19	PF24814	276 - 342	1.4e-06	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	278 - 373	1.9e-16	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	279 - 460	3.6e-12	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	279 - 383	2.5e-17	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	280 - 527	1e-10	WDR36/Utp21 first beta-propeller
Beta-prop_THOC3	PF25174	282 - 518	1.2e-45	THOC3 beta-propeller domain
WD40	PF00400	282 - 309	8.1e-06	WD domain, G-beta repeat
EIF3I	PF24805	282 - 387	1.5e-11	EIF3I
WD40_WDHD1_1st	PF24817	283 - 363	3.4e-11	WDHD1 first WD40 domain
Beta-prop_WDR3_2nd	PF25172	285 - 389	2.2e-07	WDR3 second beta-propeller domain
WD40	PF00400	314 - 351	1.2e-07	WD domain, G-beta repeat
Beta-prop_TEP1_2nd	PF25047	317 - 485	2.6e-10	TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	318 - 393	6.4e-07	CAF1B/HIR1 beta-propeller domain
WD40_CDC20-Fz	PF24807	319 - 461	7.9e-23	CDC20/Fizzy WD40 domain
Beta-prop_Aladin	PF25460	322 - 389	6.2e-06	Aladin seven-bladed propeller
WD40_Prp19	PF24814	327 - 566	2.9e-37	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	339 - 458	3.2e-10	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	375 - 487	1.1e-20	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	378 - 569	1.9e-39	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	378 - 564	1.7e-26	WDHD1 first WD40 domain
ANAPC4_WD40	PF12894	379 - 457	7.6e-07	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR36-Utp21_1st	PF25171	381 - 558	2e-07	WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_2nd	PF25172	382 - 564	4.8e-15	WDR3 second beta-propeller domain
WD40	PF00400	398 - 434	5.6e-10	WD domain, G-beta repeat
WD40_MABP1-WDR62_2nd	PF24782	399 - 570	9.9e-09	MABP1/WDR62 second WD40 domain
Beta-prop_EML	PF23409	402 - 536	4.1e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	403 - 536	1.6e-16	CAF1B/HIR1 beta-propeller domain
Beta-prop_Aladin	PF25460	408 - 460	7.3e-06	Aladin seven-bladed propeller
WDR90_beta-prop_4th	PF23342	409 - 533	7.9e-10	WDR90, 4th beta-propeller
WD40_MABP1-WDR62_1st	PF24780	415 - 536	3.6e-06	MABP1/WDR62 first WD40 domain
Beta-prop_WDR41	PF25178	420 - 545	4.7e-06	WDR41
WD40	PF00400	439 - 485	5.1e-06	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	465 - 568	2.5e-08	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	468 - 538	2.8e-06	WDR55
WD40_CDC20-Fz	PF24807	468 - 565	4.5e-11	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	468 - 564	3.2e-17	WDR3 first beta-propeller domain
Beta-prop_IFT122_1st	PF23381	468 - 561	3e-12	IFT122 first beta-propeller
Beta-prop_TEP1_2nd	PF25047	470 - 531	7.6e-08	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	471 - 570	3.1e-21	THOC3 beta-propeller domain
EIF3I	PF24805	471 - 560	3.2e-09	EIF3I
Beta-prop_WDR90_POC16_2nd	PF23393	471 - 558	3.3e-06	WDR90/POC16, second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	472 - 520	3.1e-06	WDR36/Utp21 second beta-propeller domain
WD40_Gbeta	PF25391	474 - 570	3.3e-11	G protein beta WD-40 repeat protein
WD40	PF00400	489 - 527	5.9e-12	WD domain, G-beta repeat
Beta-prop_Aladin	PF25460	497 - 566	9.6e-07	Aladin seven-bladed propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67320
fragaria_vesca	FvH4_1g16940 FvH4_2g33540 FvH4_2g33540 FvH4_2g33540 FvH4_2g33540 FvH4_2g33540
malus_domestica	MD02G1179800.v1.1 MD15G1075300.v1.1 MD15G1290400.v1.1
prunus_persica	Prupe.1G428200_v2.0.a1 Prupe.1G428200_v2.0.a1 Prupe.6G226500_v2.0.a1 Prupe.6G226500_v2.0.a1
pyrus_communis	pycom02g14570 pycom15g07030 pycom15g25410
rosa_chinensis	RchiOBHm_Chr2g0107021 RchiOBHm_Chr6g0308951
rosa_laevigata	RLG00000010601 RLG00000017550
rosa_multiflora	Rmu_sc0007106.1_g000002 Rmu_sc0030997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136680 Rroxscaffold_7G00159780
rosa_rugosa	Rorug02G0140000
rosa_samantha	Rh2AG190800 Rh2BG202300 Rh2CG195500 Rh2DG197800 Rh6AG481200 Rh6BG490300 Rh6CG495600 Rh6DG481500
rosa_wichuraiana	Rw2G015040 Rw6G041920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	791
AccBSI	CCGCTC	1 cut(s)	740
AccII	CGCG	1 cut(s)	391
AciI	CCGC	4 cut(s)	215, 584, 738, 1623
AclWI	GGATC	5 cut(s)	712, 1238, 1251, 1493, 1558
AcoI	YGGCCR	2 cut(s)	749, 1542
AcsI	RAATTY	4 cut(s)	127, 310, 428, 921
AcuI	CTGAAG	4 cut(s)	35, 158, 600, 833
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	2 cut(s)	179, 952
AgsI	TTSAA	6 cut(s)	164, 202, 434, 958, 1460, 1634
AjnI	CCWGG	2 cut(s)	618, 1381
AluBI	AGCT	7 cut(s)	25, 77, 608, 768, 1026, 1146, 1447
AluI	AGCT	7 cut(s)	25, 77, 608, 768, 1026, 1146, 1447
Alw21I	GWGCWC	3 cut(s)	27, 148, 1148
AlwI	GGATC	5 cut(s)	712, 1238, 1251, 1493, 1558
AoxI	GGCC	3 cut(s)	661, 749, 1542
ApeKI	GCWGC	1 cut(s)	1667
ApoI	RAATTY	4 cut(s)	127, 310, 428, 921
AspLEI	GCGC	3 cut(s)	387, 689, 1122
AspS9I	GGNCC	4 cut(s)	505, 971, 1097, 1379
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	4 cut(s)	4, 950, 1232, 1667
AvaII	GGWCC	4 cut(s)	505, 971, 1097, 1379
BalI	TGGCCA	2 cut(s)	751, 1544
BamHI	GGATCC	1 cut(s)	1243
BanI	GGYRCC	1 cut(s)	791
BanII	GRGCYC	2 cut(s)	27, 1148
BbsI	GAAGAC	1 cut(s)	1610
Bbv12I	GWGCWC	3 cut(s)	27, 148, 1148
BbvI	GCAGC	1 cut(s)	1654
BccI	CCATC	6 cut(s)	17, 116, 181, 755, 902, 1359
BciT130I	CCWGG	2 cut(s)	620, 1383
BcnI	CCSGG	1 cut(s)	141
BfaI	CTAG	4 cut(s)	86, 636, 771, 1463
BfmI	CTRYAG	1 cut(s)	1477
BglI	GCCNNNNNGGC	1 cut(s)	1530
BglII	AGATCT	2 cut(s)	253, 773
BisI	GCNGC	1 cut(s)	1668
BlsI	GCNGC	1 cut(s)	1669
BmcAI	AGTACT	2 cut(s)	179, 952
Bme1390I	CCNGG	3 cut(s)	141, 620, 1383
Bme18I	GGWCC	4 cut(s)	505, 971, 1097, 1379
BmgT120I	GGNCC	4 cut(s)	505, 971, 1097, 1379
BmiI	GGNNCC	5 cut(s)	588, 793, 973, 1245, 1380
BmrFI	CCNGG	3 cut(s)	141, 620, 1383
BmsI	GCATC	3 cut(s)	202, 505, 725
BpiI	GAAGAC	1 cut(s)	1610
BpmI	CTGGAG	1 cut(s)	747
BpuEI	CTTGAG	2 cut(s)	365, 434
BpuMI	CCSGG	1 cut(s)	141
Bsa29I	ATCGAT	1 cut(s)	120
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	618
Bse118I	RCCGGY	1 cut(s)	1613
Bse1I	ACTGG	6 cut(s)	540, 706, 901, 1121, 1255, 1545
Bse3DI	GCAATG	2 cut(s)	1146, 1624
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	620, 1383
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	4 cut(s)	229, 614, 1057, 1459
BseJI	GATNNNNATC	1 cut(s)	273
BseMI	GCAATG	2 cut(s)	1146, 1624
BseMII	CTCAG	2 cut(s)	87, 663
BseNI	ACTGG	6 cut(s)	540, 706, 901, 1121, 1255, 1545
BseXI	GCAGC	1 cut(s)	1654
Bsh1236I	CGCG	1 cut(s)	391
BshFI	GGCC	3 cut(s)	663, 751, 1544
BshNI	GGYRCC	1 cut(s)	791
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	3 cut(s)	27, 148, 1148
BsiSI	CCGG	2 cut(s)	141, 1614
BslFI	GGGAC	1 cut(s)	1392
BsmFI	GGGAC	1 cut(s)	1392
BsmI	GAATGC	1 cut(s)	1339
BsnI	GGCC	3 cut(s)	663, 751, 1544
Bsp1286I	GDGCHC	3 cut(s)	27, 148, 1148
Bsp143I	GATC	6 cut(s)	253, 704, 773, 1243, 1498, 1550
BspACI	CCGC	4 cut(s)	215, 584, 738, 1623
BspANI	GGCC	3 cut(s)	663, 751, 1544
BspCNI	CTCAG	2 cut(s)	86, 664
BspDI	ATCGAT	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	1324
BspLI	GGNNCC	5 cut(s)	588, 793, 973, 1245, 1380
BspPI	GGATC	5 cut(s)	712, 1238, 1251, 1493, 1558
BspT107I	GGYRCC	1 cut(s)	791
BsrBI	CCGCTC	1 cut(s)	740
BsrDI	GCAATG	2 cut(s)	1146, 1624
BsrFI	RCCGGY	1 cut(s)	1613
BsrI	ACTGG	6 cut(s)	540, 706, 901, 1121, 1255, 1545
BssAI	RCCGGY	1 cut(s)	1613
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	6 cut(s)	253, 704, 773, 1243, 1498, 1550
Bst2UI	CCWGG	2 cut(s)	620, 1383
Bst4CI	ACNGT	2 cut(s)	1441, 1690
Bst6I	CTCTTC	1 cut(s)	714
BstAPI	GCANNNNNTGC	1 cut(s)	1676
BstC8I	GCNNGC	5 cut(s)	389, 685, 742, 915, 1256
BstDEI	CTNAG	4 cut(s)	73, 672, 944, 1344
BstF5I	GGATG	4 cut(s)	229, 614, 1057, 1459
BstFNI	CGCG	1 cut(s)	391
BstHHI	GCGC	3 cut(s)	387, 689, 1122
BstKTI	GATC	6 cut(s)	256, 707, 776, 1246, 1501, 1553
BstMBI	GATC	6 cut(s)	253, 704, 773, 1243, 1498, 1550
BstMWI	GCNNNNNNNGC	4 cut(s)	493, 581, 1530, 1676
BstNI	CCWGG	2 cut(s)	620, 1383
BstNSI	RCATGY	3 cut(s)	627, 821, 1674
BstSCI	CCNGG	3 cut(s)	139, 618, 1381
BstSFI	CTRYAG	1 cut(s)	1477
BstUI	CGCG	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	1654
BstV2I	GAAGAC	1 cut(s)	1610
BstX2I	RGATCY	6 cut(s)	253, 704, 773, 1243, 1498, 1550
BstYI	RGATCY	6 cut(s)	253, 704, 773, 1243, 1498, 1550
Bsu15I	ATCGAT	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	663, 751, 1544
BsuTUI	ATCGAT	1 cut(s)	120
BtsCI	GGATG	4 cut(s)	229, 614, 1057, 1459
BtsIMutI	CAGTG	2 cut(s)	1291, 1552
Cac8I	GCNNGC	5 cut(s)	389, 685, 742, 915, 1256
CciI	TCATGA	1 cut(s)	1324
CfoI	GCGC	3 cut(s)	387, 689, 1122
Cfr10I	RCCGGY	1 cut(s)	1613
Cfr13I	GGNCC	4 cut(s)	505, 971, 1097, 1379
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	2 cut(s)	564, 1413
Csp6I	GTAC	2 cut(s)	178, 951
CviAII	CATG	8 cut(s)	362, 551, 560, 624, 818, 1303, 1325, 1671
CviQI	GTAC	2 cut(s)	178, 951
DdeI	CTNAG	4 cut(s)	73, 672, 944, 1344
DpnI	GATC	6 cut(s)	255, 706, 775, 1245, 1500, 1552
DpnII	GATC	6 cut(s)	253, 704, 773, 1243, 1498, 1550
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	2 cut(s)	749, 1542
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
Ecl136II	GAGCTC	2 cut(s)	25, 1146
Eco24I	GRGCYC	2 cut(s)	27, 1148
Eco32I	GATATC	2 cut(s)	598, 1282
Eco47I	GGWCC	4 cut(s)	505, 971, 1097, 1379
Eco53kI	GAGCTC	2 cut(s)	25, 1146
Eco57I	CTGAAG	4 cut(s)	35, 158, 600, 833
EcoICRI	GAGCTC	2 cut(s)	25, 1146
EcoO109I	RGGNCCY	1 cut(s)	971
EcoRII	CCWGG	2 cut(s)	618, 1381
EcoRV	GATATC	2 cut(s)	598, 1282
EcoT22I	ATGCAT	1 cut(s)	1572
EcoT38I	GRGCYC	2 cut(s)	27, 1148
FaeI	CATG	8 cut(s)	365, 554, 563, 627, 821, 1306, 1328, 1674
FalI	AAGNNNNNCTT	2 cut(s)	937, 969
FaqI	GGGAC	1 cut(s)	1392
FatI	CATG	8 cut(s)	361, 550, 559, 623, 817, 1302, 1324, 1670
FauNDI	CATATG	1 cut(s)	904
Fnu4HI	GCNGC	1 cut(s)	1668
FokI	GGATG	4 cut(s)	236, 601, 1064, 1466
FriOI	GRGCYC	2 cut(s)	27, 1148
Fsp4HI	GCNGC	1 cut(s)	1668
FspBI	CTAG	4 cut(s)	86, 636, 771, 1463
GlaI	GCGC	3 cut(s)	386, 688, 1121
GluI	GCNGC	1 cut(s)	1668
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	3 cut(s)	663, 751, 1544
HapII	CCGG	2 cut(s)	141, 1614
HgaI	GACGC	2 cut(s)	564, 1413
HhaI	GCGC	3 cut(s)	387, 689, 1122
Hin1II	CATG	8 cut(s)	365, 554, 563, 627, 821, 1306, 1328, 1674
Hin6I	GCGC	3 cut(s)	385, 687, 1120
HinP1I	GCGC	3 cut(s)	385, 687, 1120
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HinfI	GANTC	8 cut(s)	56, 133, 546, 694, 731, 859, 1369, 1433
HpaII	CCGG	2 cut(s)	141, 1614
HphI	GGTGA	4 cut(s)	4, 950, 1232, 1667
Hpy166II	GTNNAC	3 cut(s)	782, 941, 1114
Hpy188I	TCNGA	6 cut(s)	580, 643, 673, 1276, 1364, 1709
Hpy188III	TCNNGA	9 cut(s)	53, 601, 726, 758, 771, 856, 863, 1325, 1556
Hpy8I	GTNNAC	3 cut(s)	782, 941, 1114
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	7 cut(s)	313, 359, 397, 653, 1051, 1583, 1646
HpyCH4III	ACNGT	2 cut(s)	1441, 1690
HpyF10VI	GCNNNNNNNGC	4 cut(s)	493, 581, 1530, 1676
HpyF3I	CTNAG	4 cut(s)	73, 672, 944, 1344
Hsp92II	CATG	8 cut(s)	365, 554, 563, 627, 821, 1306, 1328, 1674
HspAI	GCGC	3 cut(s)	385, 687, 1120
Kzo9I	GATC	6 cut(s)	253, 704, 773, 1243, 1498, 1550
LmnI	GCTCC	5 cut(s)	484, 572, 613, 1151, 1299
Lsp1109I	GCAGC	1 cut(s)	1654
LweI	GCATC	3 cut(s)	202, 505, 725
MaeI	CTAG	4 cut(s)	86, 636, 771, 1463
MaeIII	GTNAC	5 cut(s)	526, 646, 853, 1578, 1655
MalI	GATC	6 cut(s)	255, 706, 775, 1245, 1500, 1552
MbiI	CCGCTC	1 cut(s)	740
MboI	GATC	6 cut(s)	253, 704, 773, 1243, 1498, 1550
MboII	GAAGA	6 cut(s)	41, 239, 551, 575, 701, 1615
MfeI	CAATTG	2 cut(s)	287, 1041
MflI	RGATCY	6 cut(s)	253, 704, 773, 1243, 1498, 1550
MhlI	GDGCHC	3 cut(s)	27, 148, 1148
MlsI	TGGCCA	2 cut(s)	751, 1544
MluNI	TGGCCA	2 cut(s)	751, 1544
MlyI	GAGTC	5 cut(s)	555, 703, 853, 1378, 1427
MmeI	TCCRAC	5 cut(s)	635, 722, 1124, 1271, 1397
Mox20I	TGGCCA	2 cut(s)	751, 1544
Mph1103I	ATGCAT	1 cut(s)	1572
MscI	TGGCCA	2 cut(s)	751, 1544
MseI	TTAA	6 cut(s)	105, 273, 797, 1197, 1227, 1331
MslI	CAYNNNNRTG	1 cut(s)	1218
Msp20I	TGGCCA	2 cut(s)	751, 1544
MspI	CCGG	2 cut(s)	141, 1614
MspR9I	CCNGG	3 cut(s)	141, 620, 1383
MunI	CAATTG	2 cut(s)	287, 1041
Mva1269I	GAATGC	1 cut(s)	1339
MvaI	CCWGG	2 cut(s)	620, 1383
MvnI	CGCG	1 cut(s)	391
MwoI	GCNNNNNNNGC	4 cut(s)	493, 581, 1530, 1676
NciI	CCSGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	904
NdeII	GATC	6 cut(s)	253, 704, 773, 1243, 1498, 1550
NlaIII	CATG	8 cut(s)	365, 554, 563, 627, 821, 1306, 1328, 1674
NlaIV	GGNNCC	5 cut(s)	588, 793, 973, 1245, 1380
NmuCI	GTSAC	4 cut(s)	646, 853, 1578, 1655
NsiI	ATGCAT	1 cut(s)	1572
NspI	RCATGY	3 cut(s)	627, 821, 1674
PagI	TCATGA	1 cut(s)	1324
PctI	GAATGC	1 cut(s)	1339
PfeI	GAWTC	3 cut(s)	56, 133, 731
PkrI	GCNGC	1 cut(s)	1669
PleI	GAGTC	5 cut(s)	554, 702, 853, 1377, 1427
PpsI	GAGTC	5 cut(s)	554, 702, 853, 1377, 1427
PpuMI	RGGWCCY	1 cut(s)	971
Psp124BI	GAGCTC	2 cut(s)	27, 1148
Psp5II	RGGWCCY	1 cut(s)	971
Psp6I	CCWGG	2 cut(s)	618, 1381
PspGI	CCWGG	2 cut(s)	618, 1381
PspN4I	GGNNCC	5 cut(s)	588, 793, 973, 1245, 1380
PspPI	GGNCC	4 cut(s)	505, 971, 1097, 1379
PspPPI	RGGWCCY	1 cut(s)	971
PsuI	RGATCY	6 cut(s)	253, 704, 773, 1243, 1498, 1550
RsaI	GTAC	2 cut(s)	179, 952
RsaNI	GTAC	2 cut(s)	178, 951
RseI	CAYNNNNRTG	1 cut(s)	1218
SacI	GAGCTC	2 cut(s)	27, 1148
SaqAI	TTAA	6 cut(s)	105, 273, 797, 1197, 1227, 1331
SatI	GCNGC	1 cut(s)	1668
Sau3AI	GATC	6 cut(s)	253, 704, 773, 1243, 1498, 1550
Sau96I	GGNCC	4 cut(s)	505, 971, 1097, 1379
ScaI	AGTACT	2 cut(s)	179, 952
SchI	GAGTC	5 cut(s)	555, 703, 853, 1378, 1427
ScrFI	CCNGG	3 cut(s)	141, 620, 1383
SduI	GDGCHC	3 cut(s)	27, 148, 1148
SfaNI	GCATC	3 cut(s)	202, 505, 725
SfcI	CTRYAG	1 cut(s)	1477
SinI	GGWCC	4 cut(s)	505, 971, 1097, 1379
SmiMI	CAYNNNNRTG	1 cut(s)	1218
SmlI	CTYRAG	2 cut(s)	344, 413
SmoI	CTYRAG	2 cut(s)	344, 413
SsiI	CCGC	4 cut(s)	215, 584, 738, 1623
SspMI	CTAG	4 cut(s)	86, 636, 771, 1463
SstI	GAGCTC	2 cut(s)	27, 1148
StyD4I	CCNGG	3 cut(s)	139, 618, 1381
TaaI	ACNGT	2 cut(s)	1441, 1690
TaqI	TCGA	2 cut(s)	21, 120
TatI	WGTACW	2 cut(s)	177, 950
TfiI	GAWTC	3 cut(s)	56, 133, 731
Tru1I	TTAA	6 cut(s)	105, 273, 797, 1197, 1227, 1331
Tru9I	TTAA	6 cut(s)	105, 273, 797, 1197, 1227, 1331
TscAI	CASTG	2 cut(s)	1291, 1552
TseFI	GTSAC	4 cut(s)	646, 853, 1578, 1655
TseI	GCWGC	1 cut(s)	1667
Tsp45I	GTSAC	4 cut(s)	646, 853, 1578, 1655
TspDTI	ATGAA	7 cut(s)	240, 378, 576, 852, 1079, 1313, 1319
TspGWI	ACGGA	2 cut(s)	7, 32
TspRI	CASTG	2 cut(s)	1291, 1552
VpaK11BI	GGWCC	4 cut(s)	505, 971, 1097, 1379
XapI	RAATTY	4 cut(s)	127, 310, 428, 921
XbaI	TCTAGA	1 cut(s)	770
XceI	RCATGY	3 cut(s)	627, 821, 1674
XspI	CTAG	4 cut(s)	86, 636, 771, 1463
ZrmI	AGTACT	2 cut(s)	179, 952
Zsp2I	ATGCAT	1 cut(s)	1572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.