RchiOBHm_Chr6g0308951

F-box-like WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003410
Physical Location & Seq
Forward (+)
66939035 .. 66942952
3918 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27783

Sequence Viewer

Length: 1623 bp
ATGATCTCCATCAACTCCACCGAATTGAACTACCTGGTCTTCCGTTACCTCCATGAATCAGGCTTCACACATTCAGCTTATGCTTTCGGATTCGAGGCGGGGATCAACAAGAGCACGGTTGATGGTAACCTAGTTCCGCCTGGTGCACTTGTTACGTTTCTCCAGAAAGGCCTTCAGTTTCTTGAGCTGGAGGCGGACTTAGGCAATGGTAGTGATGCGGATATGGAGGATGACTTTTCGTTCCTGCAACCGTTGGATTTTATCACAAAAGATGCGTATCAATTGCAGAAAATTGTTAGGGAAAATAAGGATAGGATGAATGCTGCTAACAATGAGTCCAAGCAAGAAAGCGAAAGGGAAGTAGAGGTGGTGGAGAGAAAAGAAGAAGAGATTCGAGACGATAAGTCGGAGAAGGATAGGGAGCAGGGGAAGTCGAATCAGGATCGAAGTGAGATGGAGAAGGTGGAGCCTGAAGAAAATGGAACTGGTGGAGGGGTGGAGCCAATGCAGACGTCCCCCAGCTCAACGTTCGTGCCTGGTGAAATTCCTAGTAGTGATGTCATAGTTCTAGAAGGGCATACCTCAGAGGTTTTTGCTTGCGCATGGAGTCCATCTGGTTCGCTTCTTGCATCTGGTTCTGGGGATTCAACAGCTCGAATTTGGAACATTGCCAGTGGAAGTTGTAGATCTAGCATTCAAAATGAACCTGCACGTGTGTTAAAGCATTTCAAAGGGAGAGCCAATGAGAAAAGCAAGGATGTGACTACACTTGATTGGAATGATGATGGAACGTTACTAGCAACAGGTTCCTATGATGGGCAAGCAAGAATATGGGGTAGAGACGGAGAGTTAATGACTACTTTGATCAGACATAAAGGGCCAATCTTTTCTCTGAAGTGGAACAAAGAAGGTGATTATCTTCTGAGTGGAAGTGTGGATAAAACTGCAATTGTGTGGGACATAAAGACTGGCGAATGGAAACAACAGTTTGAATTTCATTCAGCTCCAACTCTGGATGTTGATTGGCGAGACAATACTTCTTTTGCAACATGCTCTACTGATGGTACGATACATGTTTGCAAGGTTGGAGAGAACCAACCAATTAAAACTTTCTTAGGCCATCAGGGTGAAGTTAATGCTATTAAGTGGGATCCAACCGGCTCATTATTGGCTTCTTGCTCTGATGATCATACAGCAAAGATATGGAGTATGAAGCAAGACAAATGTTTGCATGATTTGAAGGAACATGTTAAGGAGATATATACCATCCGGTGGAGTCCTACAGGACCTGGCTCACATAATCCAAATCAACAATTAGTGCTAGCAAGCGCTTCCTTTGATTCACGCATAAAACTATGGGATGTGGAACTAGGGACACTTATCTACAGCTTATATGGCCACAGGGATCCGGTATACTCTGTTGCATTCAGCCCTAATGGTGAGTACTTGGCCAGTGGATCTATGGACAAATGCATGCACATATGGTCTGTGAAGGAAGGCAGAATCGTAAAAACATACACTGGAAATGGTGGAATATTCGAAGTTTGTTGGAACAAAGACGGCGATAAGATAGCTGCTTGTTTCGCTAACAATAATGTATGTGTTGTGGATTTCCGAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0001067 GO:0002021 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006508 GO:0006511 GO:0006629 GO:0006807 GO:0006996 GO:0007275 GO:0008013 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0015630 GO:0016042 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0017053 GO:0019216 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0023051 GO:0023056 GO:0030111 GO:0030154 GO:0030163 GO:0030177 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031667 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0035264 GO:0035601 GO:0036211 GO:0040007 GO:0042393 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044212 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0045444 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0047485 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050872 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051603 GO:0060255 GO:0060612 GO:0060613 GO:0060828 GO:0061448 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090207 GO:0090263 GO:0097159 GO:0098732 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140110 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04310 map04013 map04310
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

540

Amino Acids

60.07

Weight (kDa)

5.03

Isoelectric Point (pI)

34.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 8 - 32 1.8e-06 LisH
WD40_WDHD1_1st PF24817 184 - 233 1.2e-06 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 187 - 278 4.3e-16 WDR5 beta-propeller domain
WD40 PF00400 187 - 222 1.4e-10 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 187 - 279 6.3e-06 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 187 - 233 4.5e-07 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 188 - 235 1.2e-06 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 189 - 233 5.1e-08 THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 190 - 281 2.2e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_EML PF23409 191 - 325 2.5e-10 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_Aladin PF25460 220 - 325 6.2e-08 Aladin seven-bladed propeller
Beta-prop_EML_2 PF23414 246 - 346 4.6e-09 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 248 - 371 2.2e-23 WDR5 beta-propeller domain
WD40_Prp19 PF24814 248 - 326 3.9e-10 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 248 - 340 2.3e-14 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 250 - 496 2e-12 WDR36/Utp21 first beta-propeller
WD40_WDHD1_1st PF24817 251 - 333 1.8e-11 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 251 - 343 1.1e-14 THOC3 beta-propeller domain
WD40 PF00400 251 - 278 3e-07 WD domain, G-beta repeat
EIF3I PF24805 252 - 354 3.2e-11 EIF3I
WDR55 PF24796 253 - 411 2.5e-13 WDR55
Beta-prop_WDR3_2nd PF25172 254 - 361 1.9e-09 WDR3 second beta-propeller domain
Beta-prop_WDR19_1st PF23389 257 - 355 3.8e-06 WDR19 first beta-propeller
WD40_MABP1-WDR62_2nd PF24782 263 - 424 2.9e-06 MABP1/WDR62 second WD40 domain
WD40 PF00400 283 - 320 1.7e-07 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 285 - 406 5.1e-11 WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd PF25047 286 - 454 9.1e-13 TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 287 - 366 2.7e-09 CAF1B/HIR1 beta-propeller domain
WD40_CDC20-Fz PF24807 289 - 463 1e-27 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 291 - 371 1.6e-11 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 291 - 429 6.4e-12 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 297 - 535 9.6e-38 Prp19 WD40 domain
WD40_Gbeta PF25391 305 - 410 3.6e-12 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 337 - 429 7.2e-17 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 338 - 534 2.3e-30 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 343 - 456 5.1e-21 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 344 - 538 1.2e-41 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 344 - 427 1.2e-06 Echinoderm microtubule-associated protein second beta-propeller
ANAPC4_WD40 PF12894 349 - 426 1.4e-06 Anaphase-promoting complex subunit 4 WD40 domain
EIF3I PF24805 351 - 428 9.8e-06 EIF3I
Beta-prop_WDR3_2nd PF25172 351 - 530 3.6e-16 WDR3 second beta-propeller domain
WD40 PF00400 366 - 403 4.2e-11 WD domain, G-beta repeat
EIF3I PF24805 373 - 481 3.4e-08 EIF3I
Beta-prop_CAF1B_HIR1 PF24105 373 - 503 5.6e-14 CAF1B/HIR1 beta-propeller domain
WDR90_beta-prop_4th PF23342 378 - 504 1.3e-08 WDR90, 4th beta-propeller
WD40_MABP1-WDR62_1st PF24780 384 - 520 6e-06 MABP1/WDR62 first WD40 domain
Beta-prop_SCAP PF24017 391 - 498 1e-07 SCAP Beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 409 - 526 3.2e-09 CAF1B/HIR1 beta-propeller domain
Beta-prop_EML_2 PF23414 434 - 536 7.5e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 437 - 533 8.5e-17 WDR3 first beta-propeller domain
Beta-prop_IFT122_1st PF23381 437 - 529 7.9e-13 IFT122 first beta-propeller
WD40_CDC20-Fz PF24807 438 - 536 2.2e-10 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 439 - 500 9.3e-08 TEP-1 second beta-propeller
Beta-prop_THOC3 PF25174 440 - 539 5e-20 THOC3 beta-propeller domain
EIF3I PF24805 440 - 528 2.8e-08 EIF3I
Beta-prop_WDR36-Utp21_2nd PF25168 441 - 490 2.1e-06 WDR36/Utp21 second beta-propeller domain
WD40_Gbeta PF25391 443 - 539 1.4e-09 G protein beta WD-40 repeat protein
WD40 PF00400 458 - 496 7.5e-12 WD domain, G-beta repeat
WD40_RFWD3 PF23419 467 - 539 4.5e-06 E3 ubiquitin-protein ligase RFWD3 WD40 domain
Beta-prop_Aladin PF25460 468 - 530 2.5e-07 Aladin seven-bladed propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 515
Acc16I TGCGCA 1 cut(s) 601
Acc36I ACCTGC 1 cut(s) 715
AccB7I CCANNNNNTGG 1 cut(s) 1272
AccI GTMKAC 1 cut(s) 1413
AciI CCGC 4 cut(s) 98, 137, 194, 218
AclI AACGTT 2 cut(s) 527, 791
AclWI GGATC 7 cut(s) 110, 450, 1145, 1158, 1400, 1413, 1465
AcoI YGGCCR 2 cut(s) 1396, 1449
AcsI RAATTY 3 cut(s) 543, 657, 992
AcuI CTGAAG 3 cut(s) 158, 492, 914
AcvI CACGTG 1 cut(s) 713
AcyI GRCGYC 1 cut(s) 512
AfaI GTAC 2 cut(s) 1066, 1445
AfeI AGCGCT 1 cut(s) 1330
AfiI CCNNNNNNNGG 2 cut(s) 816, 1272
AflIII ACRYGT 3 cut(s) 712, 1072, 1246
AgsI TTSAA 6 cut(s) 28, 648, 698, 730, 992, 1240
AhdI GACNNNNNGTC 1 cut(s) 403
AjnI CCWGG 4 cut(s) 33, 139, 535, 1288
AluBI AGCT 7 cut(s) 77, 187, 522, 653, 1004, 1389, 1574
AluI AGCT 7 cut(s) 77, 187, 522, 653, 1004, 1389, 1574
Alw21I GWGCWC 2 cut(s) 116, 148
Alw26I GTCTC 3 cut(s) 390, 834, 1023
Alw44I GTGCAC 1 cut(s) 144
AlwI GGATC 7 cut(s) 110, 450, 1145, 1158, 1400, 1413, 1465
AlwNI CAGNNNCTG 1 cut(s) 1289
Aor51HI AGCGCT 1 cut(s) 1330
AoxI GGCC 5 cut(s) 169, 878, 1117, 1396, 1449
ApaLI GTGCAC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 323, 1574
ApoI RAATTY 3 cut(s) 543, 657, 992
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 2 cut(s) 602, 1331
AspS9I GGNCC 2 cut(s) 878, 1286
AsuHPI GGTGA 4 cut(s) 551, 923, 1139, 1451
AsuII TTCGAA 1 cut(s) 1539
AsuNHI GCTAGC 1 cut(s) 1321
AvaII GGWCC 1 cut(s) 1286
BaeGI GKGCMC 1 cut(s) 148
BalI TGGCCA 2 cut(s) 1398, 1451
BamHI GGATCC 2 cut(s) 1150, 1405
BbrPI CACGTG 1 cut(s) 713
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 2 cut(s) 116, 148
BbvI GCAGC 2 cut(s) 310, 1561
BccI CCATC 9 cut(s) 17, 116, 448, 619, 779, 809, 1055, 1128, 1274
BceAI ACGGC 1 cut(s) 1576
BciT130I CCWGG 4 cut(s) 35, 141, 537, 1290
BclI TGATCA 2 cut(s) 864, 1186
BcoDI GTCTC 3 cut(s) 390, 834, 1023
BfaI CTAG 7 cut(s) 131, 549, 569, 690, 797, 1322, 1370
BfmI CTRYAG 2 cut(s) 1281, 1384
BfoI RGCGCY 1 cut(s) 1332
BfuAI ACCTGC 1 cut(s) 715
BglII AGATCT 1 cut(s) 686
BisI GCNGC 2 cut(s) 324, 1575
BlsI GCNGC 2 cut(s) 325, 1576
BmcAI AGTACT 1 cut(s) 1445
Bme1390I CCNGG 4 cut(s) 35, 141, 537, 1290
Bme18I GGWCC 1 cut(s) 1286
BmeRI GACNNNNNGTC 1 cut(s) 403
BmgT120I GGNCC 2 cut(s) 878, 1286
BmiI GGNNCC 5 cut(s) 468, 501, 808, 1152, 1407
BmrFI CCNGG 4 cut(s) 35, 141, 537, 1290
BmsI GCATC 3 cut(s) 205, 262, 638
BmtI GCTAGC 1 cut(s) 1325
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 146, 209
Bpu14I TTCGAA 1 cut(s) 1539
BpuEI CTTGAG 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 713
BsaBI GATNNNNATC 2 cut(s) 8, 276
BsaHI GRCGYC 1 cut(s) 512
BsaWI WCCGGW 2 cut(s) 1269, 1408
Bsc4I CCNNNNNNNGG 2 cut(s) 816, 1272
Bse118I RCCGGY 1 cut(s) 1157
Bse1I ACTGG 5 cut(s) 490, 672, 973, 1452, 1525
Bse3DI GCAATG 2 cut(s) 211, 666
Bse8I GATNNNNATC 2 cut(s) 8, 276
BseBI CCWGG 4 cut(s) 35, 141, 537, 1290
BseGI GGATG 6 cut(s) 235, 321, 763, 1021, 1266, 1366
BseJI GATNNNNATC 2 cut(s) 8, 276
BseLI CCNNNNNNNGG 2 cut(s) 816, 1272
BseMI GCAATG 2 cut(s) 211, 666
BseMII CTCAG 2 cut(s) 597, 914
BseNI ACTGG 5 cut(s) 490, 672, 973, 1452, 1525
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 2 cut(s) 310, 1561
BseYI CCCAGC 1 cut(s) 518
BsgI GTGCAG 1 cut(s) 693
BshFI GGCC 5 cut(s) 171, 880, 1119, 1398, 1451
BsiHKAI GWGCWC 2 cut(s) 116, 148
BsiSI CCGG 3 cut(s) 1158, 1270, 1409
BslFI GGGAC 3 cut(s) 499, 971, 1387
BslI CCNNNNNNNGG 2 cut(s) 816, 1272
BsmAI GTCTC 3 cut(s) 390, 834, 1023
BsmBI CGTCTC 2 cut(s) 390, 834
BsmFI GGGAC 3 cut(s) 499, 971, 1387
BsmI GAATGC 3 cut(s) 325, 693, 1424
BsnI GGCC 5 cut(s) 171, 880, 1119, 1398, 1451
Bsp119I TTCGAA 1 cut(s) 1539
Bsp1286I GDGCHC 2 cut(s) 116, 148
Bsp143I GATC 9 cut(s) 3, 102, 442, 686, 864, 1150, 1186, 1405, 1457
BspACI CCGC 4 cut(s) 98, 137, 194, 218
BspANI GGCC 5 cut(s) 171, 880, 1119, 1398, 1451
BspCNI CTCAG 2 cut(s) 596, 915
BspLI GGNNCC 5 cut(s) 468, 501, 808, 1152, 1407
BspMI ACCTGC 1 cut(s) 715
BspOI GCTAGC 1 cut(s) 1325
BspPI GGATC 7 cut(s) 110, 450, 1145, 1158, 1400, 1413, 1465
BspT104I TTCGAA 1 cut(s) 1539
BsrDI GCAATG 2 cut(s) 211, 666
BsrFI RCCGGY 1 cut(s) 1157
BsrI ACTGG 5 cut(s) 490, 672, 973, 1452, 1525
BssAI RCCGGY 1 cut(s) 1157
BssMI GATC 9 cut(s) 3, 102, 442, 686, 864, 1150, 1186, 1405, 1457
BssNAI GTATAC 1 cut(s) 1414
BssNI GRCGYC 1 cut(s) 512
Bst1107I GTATAC 1 cut(s) 1414
Bst2UI CCWGG 4 cut(s) 35, 141, 537, 1290
Bst4CI ACNGT 3 cut(s) 118, 252, 987
Bst6I CTCTTC 1 cut(s) 381
BstACI GRCGYC 1 cut(s) 512
BstBAI YACGTR 1 cut(s) 713
BstBI TTCGAA 1 cut(s) 1539
BstC8I GCNNGC 5 cut(s) 598, 822, 1323, 1327, 1475
BstDEI CTNAG 4 cut(s) 199, 583, 923, 1114
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 6 cut(s) 235, 321, 763, 1021, 1266, 1366
BstH2I RGCGCY 1 cut(s) 1332
BstHHI GCGC 2 cut(s) 602, 1331
BstKTI GATC 9 cut(s) 6, 105, 445, 689, 867, 1153, 1189, 1408, 1460
BstMAI GTCTC 3 cut(s) 390, 834, 1023
BstMBI GATC 9 cut(s) 3, 102, 442, 686, 864, 1150, 1186, 1405, 1457
BstMWI GCNNNNNNNGC 2 cut(s) 1395, 1583
BstNI CCWGG 4 cut(s) 35, 141, 537, 1290
BstNSI RCATGY 4 cut(s) 1053, 1076, 1250, 1477
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 4 cut(s) 33, 139, 535, 1288
BstSFI CTRYAG 2 cut(s) 1281, 1384
BstSLI GKGCMC 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 310, 1561
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 4 cut(s) 686, 1150, 1405, 1457
BstYI RGATCY 4 cut(s) 686, 1150, 1405, 1457
BstZ17I GTATAC 1 cut(s) 1414
BsuRI GGCC 5 cut(s) 171, 880, 1119, 1398, 1451
BtsCI GGATG 6 cut(s) 235, 321, 763, 1021, 1266, 1366
BtsIMutI CAGTG 3 cut(s) 679, 1459, 1518
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 5 cut(s) 598, 822, 1323, 1327, 1475
CaiI CAGNNNCTG 1 cut(s) 1289
CfoI GCGC 2 cut(s) 602, 1331
Cfr10I RCCGGY 1 cut(s) 1157
Cfr13I GGNCC 2 cut(s) 878, 1286
CsiI ACCWGGT 1 cut(s) 33
Csp6I GTAC 2 cut(s) 1065, 1444
CviAII CATG 7 cut(s) 53, 603, 1050, 1073, 1232, 1247, 1474
CviQI GTAC 2 cut(s) 1065, 1444
DdeI CTNAG 4 cut(s) 199, 583, 923, 1114
DpnI GATC 9 cut(s) 5, 104, 444, 688, 866, 1152, 1188, 1407, 1459
DpnII GATC 9 cut(s) 3, 102, 442, 686, 864, 1150, 1186, 1405, 1457
DriI GACNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 2 cut(s) 1396, 1449
Eam1104I CTCTTC 1 cut(s) 381
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 381
EciI GGCGGA 2 cut(s) 126, 209
Eco147I AGGCCT 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 1286
Eco47III AGCGCT 1 cut(s) 1330
Eco57I CTGAAG 3 cut(s) 158, 492, 914
Eco72I CACGTG 1 cut(s) 713
Eco91I GGTNACC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 1286
EcoO65I GGTNACC 1 cut(s) 125
EcoRII CCWGG 4 cut(s) 33, 139, 535, 1288
EcoT22I ATGCAT 1 cut(s) 1475
Esp3I CGTCTC 2 cut(s) 390, 834
FaeI CATG 7 cut(s) 56, 606, 1053, 1076, 1235, 1250, 1477
FaqI GGGAC 3 cut(s) 499, 971, 1387
FatI CATG 7 cut(s) 52, 602, 1049, 1072, 1231, 1246, 1473
FauI CCCGC 1 cut(s) 91
FauNDI CATATG 1 cut(s) 1481
FbaI TGATCA 2 cut(s) 864, 1186
FblI GTMKAC 1 cut(s) 1413
Fnu4HI GCNGC 2 cut(s) 324, 1575
FokI GGATG 6 cut(s) 242, 328, 770, 1028, 1253, 1373
Fsp4HI GCNGC 2 cut(s) 324, 1575
FspBI CTAG 7 cut(s) 131, 549, 569, 690, 797, 1322, 1370
FspI TGCGCA 1 cut(s) 601
GlaI GCGC 2 cut(s) 601, 1330
GluI GCNGC 2 cut(s) 324, 1575
GsaI CCCAGC 1 cut(s) 522
GsuI CTGGAG 2 cut(s) 146, 209
HaeII RGCGCY 1 cut(s) 1332
HaeIII GGCC 5 cut(s) 171, 880, 1119, 1398, 1451
HapII CCGG 3 cut(s) 1158, 1270, 1409
HhaI GCGC 2 cut(s) 602, 1331
Hin1I GRCGYC 1 cut(s) 512
Hin1II CATG 7 cut(s) 56, 606, 1053, 1076, 1235, 1250, 1477
Hin6I GCGC 2 cut(s) 600, 1329
HinP1I GCGC 2 cut(s) 600, 1329
HpaII CCGG 3 cut(s) 1158, 1270, 1409
HphI GGTGA 4 cut(s) 551, 923, 1139, 1451
Hpy166II GTNNAC 2 cut(s) 146, 1414
Hpy188I TCNGA 8 cut(s) 89, 409, 586, 869, 894, 924, 1183, 1616
Hpy188III TCNNGA 6 cut(s) 163, 182, 395, 440, 569, 1013
Hpy8I GTNNAC 2 cut(s) 146, 1414
HpyAV CCTTC 8 cut(s) 182, 406, 454, 566, 902, 1234, 1486, 1490
HpyCH4III ACNGT 3 cut(s) 118, 252, 987
HpyCH4IV ACGT 5 cut(s) 155, 512, 527, 712, 791
HpyF10VI GCNNNNNNNGC 2 cut(s) 1395, 1583
HpyF3I CTNAG 4 cut(s) 199, 583, 923, 1114
HpySE526I ACGT 5 cut(s) 155, 512, 527, 712, 791
Hsp92I GRCGYC 1 cut(s) 512
Hsp92II CATG 7 cut(s) 56, 606, 1053, 1076, 1235, 1250, 1477
HspAI GCGC 2 cut(s) 600, 1329
Ksp22I TGATCA 2 cut(s) 864, 1186
Kzo9I GATC 9 cut(s) 3, 102, 442, 686, 864, 1150, 1186, 1405, 1457
LmnI GCTCC 4 cut(s) 421, 466, 499, 1009
Lsp1109I GCAGC 2 cut(s) 310, 1561
LweI GCATC 3 cut(s) 205, 262, 638
MabI ACCWGGT 1 cut(s) 33
MaeI CTAG 7 cut(s) 131, 549, 569, 690, 797, 1322, 1370
MaeII ACGT 5 cut(s) 155, 512, 527, 712, 791
MaeIII GTNAC 5 cut(s) 44, 125, 151, 760, 792
MalI GATC 9 cut(s) 5, 104, 444, 688, 866, 1152, 1188, 1407, 1459
MboI GATC 9 cut(s) 3, 102, 442, 686, 864, 1150, 1186, 1405, 1457
MboII GAAGA 5 cut(s) 31, 395, 398, 485, 911
MfeI CAATTG 2 cut(s) 281, 948
MflI RGATCY 4 cut(s) 686, 1150, 1405, 1457
MhlI GDGCHC 2 cut(s) 116, 148
MlsI TGGCCA 2 cut(s) 1398, 1451
MluCI AATT 9 cut(s) 23, 281, 291, 543, 657, 948, 992, 1101, 1313
MluNI TGGCCA 2 cut(s) 1398, 1451
MlyI GAGTC 3 cut(s) 344, 616, 1285
MmeI TCCRAC 6 cut(s) 234, 387, 1031, 1066, 1178, 1529
MnlI CCTC 8 cut(s) 59, 88, 184, 220, 358, 485, 580, 592
Mox20I TGGCCA 2 cut(s) 1398, 1451
Mph1103I ATGCAT 1 cut(s) 1475
MroXI GAANNNNTTC 1 cut(s) 390
MscI TGGCCA 2 cut(s) 1398, 1451
MseI TTAA 6 cut(s) 719, 851, 1104, 1134, 1143, 1251
MslI CAYNNNNRTG 1 cut(s) 1125
Msp20I TGGCCA 2 cut(s) 1398, 1451
MspI CCGG 3 cut(s) 1158, 1270, 1409
MspR9I CCNGG 4 cut(s) 35, 141, 537, 1290
MunI CAATTG 2 cut(s) 281, 948
Mva1269I GAATGC 3 cut(s) 325, 693, 1424
MvaI CCWGG 4 cut(s) 35, 141, 537, 1290
MwoI GCNNNNNNNGC 2 cut(s) 1395, 1583
NdeI CATATG 1 cut(s) 1481
NdeII GATC 9 cut(s) 3, 102, 442, 686, 864, 1150, 1186, 1405, 1457
NheI GCTAGC 1 cut(s) 1321
NlaIII CATG 7 cut(s) 56, 606, 1053, 1076, 1235, 1250, 1477
NlaIV GGNNCC 5 cut(s) 468, 501, 808, 1152, 1407
NmuCI GTSAC 1 cut(s) 760
NsbI TGCGCA 1 cut(s) 601
NsiI ATGCAT 1 cut(s) 1475
NspI RCATGY 4 cut(s) 1053, 1076, 1250, 1477
NspV TTCGAA 1 cut(s) 1539
PaeI GCATGC 1 cut(s) 1477
PceI AGGCCT 1 cut(s) 171
PciI ACATGT 2 cut(s) 1072, 1246
PctI GAATGC 3 cut(s) 325, 693, 1424
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 7 cut(s) 56, 90, 391, 436, 644, 1340, 1503
PflMI CCANNNNNTGG 1 cut(s) 1272
PkrI GCNGC 2 cut(s) 325, 1576
PleI GAGTC 3 cut(s) 343, 615, 1284
PmaCI CACGTG 1 cut(s) 713
PmlI CACGTG 1 cut(s) 713
PpsI GAGTC 3 cut(s) 343, 615, 1284
Ppu21I YACGTR 1 cut(s) 713
PpuMI RGGWCCY 1 cut(s) 1286
PscI ACATGT 2 cut(s) 1072, 1246
Psp1406I AACGTT 2 cut(s) 527, 791
Psp5II RGGWCCY 1 cut(s) 1286
Psp6I CCWGG 4 cut(s) 33, 139, 535, 1288
PspCI CACGTG 1 cut(s) 713
PspEI GGTNACC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 518
PspGI CCWGG 4 cut(s) 33, 139, 535, 1288
PspN4I GGNNCC 5 cut(s) 468, 501, 808, 1152, 1407
PspPI GGNCC 2 cut(s) 878, 1286
PspPPI RGGWCCY 1 cut(s) 1286
PstNI CAGNNNCTG 1 cut(s) 1289
PsuI RGATCY 4 cut(s) 686, 1150, 1405, 1457
RsaI GTAC 2 cut(s) 1066, 1445
RsaNI GTAC 2 cut(s) 1065, 1444
RseI CAYNNNNRTG 1 cut(s) 1125
SaqAI TTAA 6 cut(s) 719, 851, 1104, 1134, 1143, 1251
SatI GCNGC 2 cut(s) 324, 1575
Sau3AI GATC 9 cut(s) 3, 102, 442, 686, 864, 1150, 1186, 1405, 1457
Sau96I GGNCC 2 cut(s) 878, 1286
ScaI AGTACT 1 cut(s) 1445
SchI GAGTC 3 cut(s) 344, 616, 1285
ScrFI CCNGG 4 cut(s) 35, 141, 537, 1290
SduI GDGCHC 2 cut(s) 116, 148
SexAI ACCWGGT 1 cut(s) 33
SfaNI GCATC 3 cut(s) 205, 262, 638
SfcI CTRYAG 2 cut(s) 1281, 1384
SfuI TTCGAA 1 cut(s) 1539
SinI GGWCC 1 cut(s) 1286
SmiMI CAYNNNNRTG 1 cut(s) 1125
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SphI GCATGC 1 cut(s) 1477
Sse9I AATT 9 cut(s) 23, 281, 291, 543, 657, 948, 992, 1101, 1313
SseBI AGGCCT 1 cut(s) 171
SsiI CCGC 4 cut(s) 98, 137, 194, 218
SspI AATATT 1 cut(s) 1536
SspMI CTAG 7 cut(s) 131, 549, 569, 690, 797, 1322, 1370
StuI AGGCCT 1 cut(s) 171
StyD4I CCNGG 4 cut(s) 33, 139, 535, 1288
TaaI ACNGT 3 cut(s) 118, 252, 987
TaiI ACGT 5 cut(s) 158, 515, 530, 715, 794
TaqI TCGA 6 cut(s) 93, 394, 434, 445, 655, 1539
TasI AATT 9 cut(s) 23, 281, 291, 543, 657, 948, 992, 1101, 1313
TatI WGTACW 1 cut(s) 1443
TfiI GAWTC 7 cut(s) 56, 90, 391, 436, 644, 1340, 1503
Tru1I TTAA 6 cut(s) 719, 851, 1104, 1134, 1143, 1251
Tru9I TTAA 6 cut(s) 719, 851, 1104, 1134, 1143, 1251
TscAI CASTG 3 cut(s) 679, 1459, 1525
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 2 cut(s) 323, 1574
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 5 cut(s) 69, 332, 717, 986, 1226
TspGWI ACGGA 2 cut(s) 32, 858
TspRI CASTG 3 cut(s) 679, 1459, 1525
Van91I CCANNNNNTGG 1 cut(s) 1272
VneI GTGCAC 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 1286
XapI RAATTY 3 cut(s) 543, 657, 992
XbaI TCTAGA 1 cut(s) 568
XceI RCATGY 4 cut(s) 1053, 1076, 1250, 1477
XcmI CCANNNNNNNNNTGG 1 cut(s) 1459
XmiI GTMKAC 1 cut(s) 1413
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 7 cut(s) 131, 549, 569, 690, 797, 1322, 1370
ZraI GACGTC 1 cut(s) 513
ZrmI AGTACT 1 cut(s) 1445
Zsp2I ATGCAT 1 cut(s) 1475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.