Rh2DG197800

F-box-like WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
18197996 .. 18207604
9609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG197800.1

Sequence Viewer

Length: 1305 bp
ATGACCTCCATCACCTCCGTCGAGCTCAATTTCCTCGTCTTCCGTTATCTTCAGGAATCAGGCTTCACACACTCGGCTTTTGCTCTAGGATATGAGGCCGGTATTAACAAATGCACTATAGATGGAAATTTGATTCCACCCGGTGCTCTCATTACATTTGTTCAAAAAGGGCTTCAGTACTTGGAGATGGAAGCCAACTTGAGTAATAGTGATGCAGAGGTGGATGAGGATTTCTCTCTTTTACAACCTTTAGATCTCATCCAAAATGATGTTAATCAACTACGCCAATTGATAAAAGATAGAAAGAAAAATTTGCAGAAGGATAGAGATAAGGACAAAGACCTTGAGAAAGAACATGAAGGAGAGCGTACACGAGTAAGAGAGAAGGAAAGACTAGAAAGGGAGAAGGAATTTGAAAAGAGCAGAGAGAGGGTAGAAAAGAATAAGGAGCTAGAAAAGAATAAGGAGGTAGAAAAGAACAAGGAGCAAGAAAAGCATCATGAGGACCATAACGACAGAGATAGGGCTACAGAACAGGAAGAAAAAGTCAATGTCAAACATGAAGAAAATGGAGCTTCTGCAGAACCAATGGATATCTCGACAGCTTCAACATCTCAGGCATGTGAAATCCCTAGTTCTGATGTGACCATTCTAGAAGGCCATACATCTGAGGTCTGTGCTTGTGCTTGGAGTCCAACTGGATCTCTTCTTGCATCTGGGTCTGGAGATTCTACAGCTCGCATTTGGCCAATTCCAGATGGAAGCTCTAGATCTGGTTTACAAAATGGTGCTTTAAATGTGTTGGTGCTAAAGCATGTTAAGGGTAGAACAAATGAAAAGAGTAAAGATGTCACGACTCTTGATTGGAATGGAGAGGGAACACTGCTTGCAACTGGCTCATATGATGGGCAGGCAAGAATTTGGAGTACAAATGGTGAACTAAGGAGTACTTTGAACAAACATAAAGGTCCCATATTCTCTCTAAAGTGGAACAAGAAGGGAGATTATCTGCTTACGGGAAGTTGTGATAAAACTGCAATTGTGTGGGATGTGAAGGCAGAGGAAGTGAAGCAACAATTTGAGTTTCATTCAGGTCCAACACTTGATGTTGACTGGCGCAACAATATGCAATTTGCAATGAGCTCCACAGACAATATGATATATGTTTGCAAGATTGGAGAAAACCGCCCTATTAAAACTTTTGCAGGACATCAGGGTGAAGTTAATTGTGTGAAATGGGATCCAACTGGCACGCTGTTGGCTTCATGTTCTGATGATATCAGTGCAAAGGTTATTTTCTTTTGA

Protein Analysis

434

Amino Acids

48.82

Weight (kDa)

5.3

Isoelectric Point (pI)

30.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 8 - 33 7e-08 LisH
Beta-prop_WDR5 PF25175 214 - 311 2.1e-13 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 214 - 252 8.4e-08 CDC20/Fizzy WD40 domain
WD40 PF00400 215 - 249 1.6e-10 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 215 - 323 1.6e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_EML PF23409 218 - 388 2e-10 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3 PF25174 221 - 428 4.5e-33 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 223 - 426 7.6e-07 MABP1/WDR62 second WD40 domain
Beta-prop_EML_2 PF23414 259 - 356 2.2e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_IFT140_1st PF23383 272 - 353 3e-06 IFT140 first beta-propeller
WD40_Prp19 PF24814 274 - 339 3.2e-06 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 277 - 430 2.3e-26 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 277 - 431 9.1e-10 WDR36/Utp21 second beta-propeller domain
WD40_CDC20-Fz PF24807 278 - 422 7.6e-22 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 278 - 374 4.6e-17 WDR5 beta-propeller domain
WD40 PF00400 281 - 309 3e-06 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 281 - 362 1.5e-11 WDHD1 first WD40 domain
EIF3I PF24805 281 - 387 3.8e-12 EIF3I
WDR55 PF24796 282 - 366 8.6e-06 WDR55
WD40_Gbeta PF25391 283 - 431 3.9e-09 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 284 - 389 1e-07 WDR3 second beta-propeller domain
Beta-prop_WDR19_1st PF23389 287 - 427 1.8e-08 WDR19 first beta-propeller
Beta-prop_TEP1_2nd PF25047 295 - 411 4.4e-07 TEP-1 second beta-propeller
WD40 PF00400 313 - 350 8.3e-08 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 317 - 396 1.4e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_Aladin PF25460 321 - 388 6.1e-06 Aladin seven-bladed propeller
WD40_Prp19 PF24814 327 - 428 1.8e-14 Prp19 WD40 domain
WD40_WDHD1_1st PF24817 376 - 426 3.8e-06 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 377 - 431 4e-08 WDR5 beta-propeller domain
WD40 PF00400 396 - 430 1.5e-08 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1186
AclWI GGATC 3 cut(s) 709, 1235, 1248
AcoI YGGCCR 1 cut(s) 746
AcsI RAATTY 4 cut(s) 127, 310, 410, 918
AcuI CTGAAG 2 cut(s) 35, 158
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 4 cut(s) 179, 370, 928, 949
AgsI TTSAA 4 cut(s) 164, 416, 609, 955
AluBI AGCT 7 cut(s) 25, 451, 575, 605, 737, 765, 1143
AluI AGCT 7 cut(s) 25, 451, 575, 605, 737, 765, 1143
Alw21I GWGCWC 3 cut(s) 27, 148, 1145
AlwI GGATC 3 cut(s) 709, 1235, 1248
AoxI GGCC 3 cut(s) 96, 658, 746
ApoI RAATTY 4 cut(s) 127, 310, 410, 918
AspLEI GCGC 1 cut(s) 1119
AspS9I GGNCC 3 cut(s) 505, 968, 1094
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 3 cut(s) 4, 947, 1229
AvaII GGWCC 3 cut(s) 505, 968, 1094
BalI TGGCCA 1 cut(s) 748
BamHI GGATCC 1 cut(s) 1240
BanII GRGCYC 2 cut(s) 27, 1145
BauI CACGAG 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 3 cut(s) 27, 148, 1145
BccI CCATC 5 cut(s) 17, 116, 181, 752, 899
BcnI CCSGG 1 cut(s) 141
BfaI CTAG 6 cut(s) 86, 395, 452, 633, 653, 768
BfmI CTRYAG 4 cut(s) 117, 528, 579, 732
BglII AGATCT 2 cut(s) 253, 770
BmcAI AGTACT 2 cut(s) 179, 949
Bme1390I CCNGG 1 cut(s) 141
Bme18I GGWCC 3 cut(s) 505, 968, 1094
BmgT120I GGNCC 3 cut(s) 505, 968, 1094
BmiI GGNNCC 2 cut(s) 970, 1242
BmrFI CCNGG 1 cut(s) 141
BmsI GCATC 3 cut(s) 202, 505, 722
BpiI GAAGAC 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 218, 250
BpmI CTGGAG 1 cut(s) 744
BpuEI CTTGAG 2 cut(s) 220, 365
BpuMI CCSGG 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 273
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 4 cut(s) 703, 898, 1118, 1252
Bse3DI GCAATG 1 cut(s) 1143
Bse8I GATNNNNATC 1 cut(s) 273
BseGI GGATG 3 cut(s) 229, 258, 1054
BseJI GATNNNNATC 1 cut(s) 273
BseMI GCAATG 1 cut(s) 1143
BseMII CTCAG 2 cut(s) 629, 660
BseNI ACTGG 4 cut(s) 703, 898, 1118, 1252
BshFI GGCC 3 cut(s) 98, 660, 748
BsiHKAI GWGCWC 3 cut(s) 27, 148, 1145
BsiSI CCGG 2 cut(s) 99, 141
BslFI GGGAC 1 cut(s) 954
BsmFI GGGAC 1 cut(s) 954
BsnI GGCC 3 cut(s) 98, 660, 748
Bsp1286I GDGCHC 3 cut(s) 27, 148, 1145
Bsp143I GATC 4 cut(s) 253, 701, 770, 1240
BspACI CCGC 1 cut(s) 1186
BspANI GGCC 3 cut(s) 98, 660, 748
BspCNI CTCAG 2 cut(s) 628, 661
BspHI TCATGA 1 cut(s) 499
BspLI GGNNCC 2 cut(s) 970, 1242
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 3 cut(s) 709, 1235, 1248
BsrDI GCAATG 1 cut(s) 1143
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 4 cut(s) 703, 898, 1118, 1252
BssAI RCCGGY 1 cut(s) 98
BssMI GATC 4 cut(s) 253, 701, 770, 1240
BssSI CACGAG 1 cut(s) 372
Bst2BI CACGAG 1 cut(s) 372
Bst6I CTCTTC 1 cut(s) 711
BstC8I GCNNGC 4 cut(s) 739, 888, 912, 1253
BstDEI CTNAG 3 cut(s) 615, 669, 941
BstF5I GGATG 3 cut(s) 229, 258, 1054
BstHHI GCGC 1 cut(s) 1119
BstKTI GATC 4 cut(s) 256, 704, 773, 1243
BstMBI GATC 4 cut(s) 253, 701, 770, 1240
BstMWI GCNNNNNNNGC 1 cut(s) 493
BstNSI RCATGY 2 cut(s) 624, 818
BstSCI CCNGG 1 cut(s) 139
BstSFI CTRYAG 4 cut(s) 117, 528, 579, 732
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 4 cut(s) 253, 701, 770, 1240
BstYI RGATCY 4 cut(s) 253, 701, 770, 1240
BsuRI GGCC 3 cut(s) 98, 660, 748
BtsCI GGATG 3 cut(s) 229, 258, 1054
BtsI GCAGTG 1 cut(s) 881
BtsIMutI CAGTG 2 cut(s) 881, 1288
Cac8I GCNNGC 4 cut(s) 739, 888, 912, 1253
CciI TCATGA 1 cut(s) 499
CfoI GCGC 1 cut(s) 1119
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 3 cut(s) 505, 968, 1094
Csp6I GTAC 4 cut(s) 178, 369, 927, 948
CviAII CATG 6 cut(s) 356, 500, 560, 621, 815, 1266
CviQI GTAC 4 cut(s) 178, 369, 927, 948
DdeI CTNAG 3 cut(s) 615, 669, 941
DpnI GATC 4 cut(s) 255, 703, 772, 1242
DpnII GATC 4 cut(s) 253, 701, 770, 1240
DraI TTTAAA 1 cut(s) 795
DraIII CACNNNGTG 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 746
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Ecl136II GAGCTC 2 cut(s) 25, 1143
Eco24I GRGCYC 2 cut(s) 27, 1145
Eco32I GATATC 2 cut(s) 595, 1279
Eco47I GGWCC 3 cut(s) 505, 968, 1094
Eco53kI GAGCTC 2 cut(s) 25, 1143
Eco57I CTGAAG 2 cut(s) 35, 158
EcoICRI GAGCTC 2 cut(s) 25, 1143
EcoO109I RGGNCCY 1 cut(s) 968
EcoRV GATATC 2 cut(s) 595, 1279
EcoT38I GRGCYC 2 cut(s) 27, 1145
FaeI CATG 6 cut(s) 359, 503, 563, 624, 818, 1269
FalI AAGNNNNNCTT 2 cut(s) 934, 966
FaqI GGGAC 1 cut(s) 954
FatI CATG 6 cut(s) 355, 499, 559, 620, 814, 1265
FauNDI CATATG 1 cut(s) 901
FokI GGATG 3 cut(s) 236, 245, 1061
FriOI GRGCYC 2 cut(s) 27, 1145
FspBI CTAG 6 cut(s) 86, 395, 452, 633, 653, 768
GlaI GCGC 1 cut(s) 1118
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 3 cut(s) 98, 660, 748
HapII CCGG 2 cut(s) 99, 141
HhaI GCGC 1 cut(s) 1119
Hin1II CATG 6 cut(s) 359, 503, 563, 624, 818, 1269
Hin6I GCGC 1 cut(s) 1117
HinP1I GCGC 1 cut(s) 1117
HincII GTYRAC 1 cut(s) 1111
HindII GTYRAC 1 cut(s) 1111
HinfI GANTC 5 cut(s) 56, 133, 691, 728, 856
HpaII CCGG 2 cut(s) 99, 141
HphI GGTGA 3 cut(s) 4, 947, 1229
Hpy166II GTNNAC 4 cut(s) 371, 779, 938, 1111
Hpy188I TCNGA 3 cut(s) 640, 670, 1273
Hpy188III TCNNGA 9 cut(s) 53, 500, 598, 653, 723, 755, 768, 853, 860
Hpy8I GTNNAC 4 cut(s) 371, 779, 938, 1111
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 7 cut(s) 313, 353, 379, 400, 650, 991, 1048
HpyF10VI GCNNNNNNNGC 1 cut(s) 493
HpyF3I CTNAG 3 cut(s) 615, 669, 941
Hsp92II CATG 6 cut(s) 359, 503, 563, 624, 818, 1269
HspAI GCGC 1 cut(s) 1117
Kzo9I GATC 4 cut(s) 253, 701, 770, 1240
LmnI GCTCC 4 cut(s) 448, 484, 572, 1148
LweI GCATC 3 cut(s) 202, 505, 722
MaeI CTAG 6 cut(s) 86, 395, 452, 633, 653, 768
MaeIII GTNAC 2 cut(s) 643, 850
MalI GATC 4 cut(s) 255, 703, 772, 1242
MboI GATC 4 cut(s) 253, 701, 770, 1240
MboII GAAGA 5 cut(s) 31, 41, 551, 575, 698
MfeI CAATTG 2 cut(s) 287, 1038
MflI RGATCY 4 cut(s) 253, 701, 770, 1240
MhlI GDGCHC 3 cut(s) 27, 148, 1145
MlsI TGGCCA 1 cut(s) 748
MluNI TGGCCA 1 cut(s) 748
MlyI GAGTC 2 cut(s) 700, 850
MmeI TCCRAC 3 cut(s) 719, 1121, 1268
Mox20I TGGCCA 1 cut(s) 748
MscI TGGCCA 1 cut(s) 748
MseI TTAA 6 cut(s) 105, 273, 794, 819, 1194, 1224
MslI CAYNNNNRTG 1 cut(s) 1215
Msp20I TGGCCA 1 cut(s) 748
MspI CCGG 2 cut(s) 99, 141
MspR9I CCNGG 1 cut(s) 141
MunI CAATTG 2 cut(s) 287, 1038
MwoI GCNNNNNNNGC 1 cut(s) 493
NciI CCSGG 1 cut(s) 141
NdeI CATATG 1 cut(s) 901
NdeII GATC 4 cut(s) 253, 701, 770, 1240
NlaIII CATG 6 cut(s) 359, 503, 563, 624, 818, 1269
NlaIV GGNNCC 2 cut(s) 970, 1242
NmeAIII GCCGAG 1 cut(s) 53
NmuCI GTSAC 2 cut(s) 643, 850
NspI RCATGY 2 cut(s) 624, 818
PagI TCATGA 1 cut(s) 499
PfeI GAWTC 3 cut(s) 56, 133, 728
PleI GAGTC 2 cut(s) 699, 850
PpsI GAGTC 2 cut(s) 699, 850
PpuMI RGGWCCY 1 cut(s) 968
Psp124BI GAGCTC 2 cut(s) 27, 1145
Psp5II RGGWCCY 1 cut(s) 968
PspN4I GGNNCC 2 cut(s) 970, 1242
PspPI GGNCC 3 cut(s) 505, 968, 1094
PspPPI RGGWCCY 1 cut(s) 968
PstI CTGCAG 1 cut(s) 583
PsuI RGATCY 4 cut(s) 253, 701, 770, 1240
RsaI GTAC 4 cut(s) 179, 370, 928, 949
RsaNI GTAC 4 cut(s) 178, 369, 927, 948
RseI CAYNNNNRTG 1 cut(s) 1215
SacI GAGCTC 2 cut(s) 27, 1145
SaqAI TTAA 6 cut(s) 105, 273, 794, 819, 1194, 1224
Sau3AI GATC 4 cut(s) 253, 701, 770, 1240
Sau96I GGNCC 3 cut(s) 505, 968, 1094
ScaI AGTACT 2 cut(s) 179, 949
SchI GAGTC 2 cut(s) 700, 850
ScrFI CCNGG 1 cut(s) 141
SduI GDGCHC 3 cut(s) 27, 148, 1145
SfaNI GCATC 3 cut(s) 202, 505, 722
SfcI CTRYAG 4 cut(s) 117, 528, 579, 732
SinI GGWCC 3 cut(s) 505, 968, 1094
SmiMI CAYNNNNRTG 1 cut(s) 1215
SmlI CTYRAG 2 cut(s) 199, 344
SmoI CTYRAG 2 cut(s) 199, 344
SsiI CCGC 1 cut(s) 1186
SspMI CTAG 6 cut(s) 86, 395, 452, 633, 653, 768
SstI GAGCTC 2 cut(s) 27, 1145
StyD4I CCNGG 1 cut(s) 139
TaqI TCGA 2 cut(s) 21, 599
TatI WGTACW 3 cut(s) 177, 926, 947
TfiI GAWTC 3 cut(s) 56, 133, 728
Tru1I TTAA 6 cut(s) 105, 273, 794, 819, 1194, 1224
Tru9I TTAA 6 cut(s) 105, 273, 794, 819, 1194, 1224
TscAI CASTG 2 cut(s) 888, 1288
TseFI GTSAC 2 cut(s) 643, 850
Tsp45I GTSAC 2 cut(s) 643, 850
TspDTI ATGAA 5 cut(s) 372, 576, 849, 1076, 1254
TspGWI ACGGA 2 cut(s) 7, 32
TspRI CASTG 2 cut(s) 888, 1288
VpaK11BI GGWCC 3 cut(s) 505, 968, 1094
XapI RAATTY 4 cut(s) 127, 310, 410, 918
XbaI TCTAGA 2 cut(s) 652, 767
XceI RCATGY 2 cut(s) 624, 818
XspI CTAG 6 cut(s) 86, 395, 452, 633, 653, 768
ZrmI AGTACT 2 cut(s) 179, 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.