Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003410

Physical Location & Seq

Genomic Coordinates Forward (+)

18410342 .. 18417561

Gene Structure 7220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48106

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1713 bp

ATGACCTCCATCACCTCCGTCGAGCTCAATTTCCTCGTCTTCCGTTATCTTCAGGAATCAGGCTTCACACACTCGGCTTTTGCTCTAGGATATGAGGCCGGTATTAACAAATGCACTATAGATGGAAATTTGATTCCACCTGGTGCTCTCATTACATTTGTTCAAAAAGGGCTTCAGTACTTGGAGATGGAAGCCAACTTGAGTAATAGTGATGCAGAGGTTGATGAGGATTTCTCTCTTTTACAACCTTTAGATCTCATCCAAAATGATGTTAATCAACTACGCCAATTGATAAAAGATAGAAAGAAAAATTTGCAGAAGGATAGAGATAAGGACAAAGACCTTGAGAAAGAACATGAAGGAGAGCGTACACGAGTAAGAGAGAAGGAAAGACTAGAAAGGGAGAAGGAATTTGAAAAGAGCAGAGAGAGGGTAGAAAAGAATAAGGAGCTAGAAAAGAATAAGGAGGTAGAAAAGAACAAGGAGCAAGAAAAGCATCATGAGGACCATAACGACAGAGGTAGGGCTACAGAACAGGAAGAAAAAGTCAATGTCAAACATGAAGAAAATGGAGCTTCTGCAGAACCAATGGATATCTCGACAGCTTCAACATCTCAGGCATGTGAAATCCCTAGTTCTGATGTGACCATTCTAGAAGGCCATACATCTGAGGTCTGTGCTTGTGCTTGGAGTCCAACTGGATCTCTTCTTGCATCTGGGTCTGGAGATTCTACAGCTCGCATTTGGCCAATTCCAGATGGAAGCTCTAGATCTGGTTTACAAAATGGTGCATTAAATGTGTTGGTGCTAAAGCATGTTAAGGGTAGAACAAATGAAAAGAGTAAAGATGTCACGACTCTTGATTGGAATGGAGAGGGAACACTGCTTGCAACTGGCTCATATGATGGGCAGGCAAGAATTTGGAGTACAAATGGTGAACTAAGGAGTACTTTGAACAAACATAAAGGTCCCATATTCTCTCTAAAGTGGAACAAGAAGGGAGATTATCTGCTTACGGGAAGTTGTGATAAAACTGCAATTGTGTGGGATGTGAAGGCAGAGGAAGTGAAGCAACAATTTGAGTTTCATTCAGGTCCAACACTTGATGTTGACTGGCGCAACAATATGCAATTTGCAATGAGCTCCACAGACAATATGATATATGTTTGCAAGATTGGGGAAAACCGCCCTATTAAAACTTTTGCAGGACATCAGGGTGAAGTTAATTGTGTGAAATGGGATCCAACTGGCACGCTGTTGGCTTCATGTTCTGATGATATCAGTGCAAAGATATGGAGCATGAAGCAGGAAAAGTATGTTCATGATTTAAGAGAGCATTCTAAGGAGATATACACTATCAGATGGAGTCCAACAGGACCCGGAACAAACAACCCTAACCAGCAGTTGGTTCTGGCAAGTGCGTCATTTGACTCTACTGTAAAGCTATGGGATGTGGAACTAGGAAAACTTCTCTACAGCTTGAATGGACACAGGGATCCTGTTTATTCCGTCGCCTTTAGCCCAAATGGTGAGTATTTGGCCAGTGGATCTCTTGATAAATCAATGCATATCTGGTCACTAAAGGAAGGCAAGATTGTGAAAACATACACCGGCAATGGCGGTATATTTGAAGTTTGCTGGAACAAGGAAGGTGACAAAATTGCTGCATGTTTTGCCAACAATACAGTCTGTGTTTTGGATTTCAGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000151 GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0098732 GO:0140110 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04310 map04013 map04310

Pfam Domains

Protein Families

LisH WD40

Protein Analysis

570

Amino Acids

64.02

Weight (kDa)

5.59

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LisH	PF08513	8 - 33	9.8e-08	LisH
Beta-prop_WDR5	PF25175	214 - 256	2.5e-07	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	214 - 252	1.1e-07	CDC20/Fizzy WD40 domain
WD40	PF00400	215 - 249	2.3e-10	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	215 - 323	2.2e-07	CAF1B/HIR1 beta-propeller domain
Beta-prop_EML	PF23409	218 - 388	3.4e-10	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3	PF25174	221 - 253	3.4e-06	THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	225 - 455	5.5e-08	MABP1/WDR62 second WD40 domain
Beta-prop_EML_2	PF23414	259 - 354	8.5e-08	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_IFT140_1st	PF23383	272 - 353	4.9e-06	IFT140 first beta-propeller
WD40_Prp19	PF24814	275 - 358	1.1e-10	Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	277 - 459	2.5e-13	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	277 - 371	1.5e-16	WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	278 - 526	1.4e-11	WDR36/Utp21 first beta-propeller
Beta-prop_WDR5	PF25175	278 - 373	8.7e-17	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	281 - 517	3.5e-46	THOC3 beta-propeller domain
EIF3I	PF24805	281 - 387	6.4e-12	EIF3I
WD40_WDHD1_1st	PF24817	281 - 362	2.2e-11	WDHD1 first WD40 domain
WD40	PF00400	281 - 309	4.2e-06	WD domain, G-beta repeat
WDR55	PF24796	282 - 372	8.2e-06	WDR55
NBCH_WD40	PF20426	282 - 445	5.5e-06	Neurobeachin beta propeller domain
Beta-prop_WDR3_2nd	PF25172	284 - 388	1.7e-07	WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	295 - 484	2.8e-11	TEP-1 second beta-propeller
WD40	PF00400	313 - 350	1.2e-07	WD domain, G-beta repeat
WD40_Gbeta	PF25391	314 - 438	1.3e-09	G protein beta WD-40 repeat protein
Beta-prop_CAF1B_HIR1	PF24105	317 - 396	2.1e-07	CAF1B/HIR1 beta-propeller domain
WD40_CDC20-Fz	PF24807	318 - 460	2.9e-23	CDC20/Fizzy WD40 domain
Beta-prop_Aladin	PF25460	321 - 388	7.8e-06	Aladin seven-bladed propeller
WD40_Prp19	PF24814	325 - 565	3e-38	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	338 - 457	1.1e-10	Echinoderm microtubule-associated protein second beta-propeller
ANAPC4_WD40	PF12894	372 - 456	7.6e-08	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR3_1st	PF25173	374 - 486	2.1e-21	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	376 - 563	3.1e-27	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	377 - 568	9.2e-40	WDR5 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	379 - 562	2.4e-15	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	383 - 553	4.1e-07	WDR36/Utp21 first beta-propeller
WD40	PF00400	396 - 433	3.3e-10	WD domain, G-beta repeat
WD40_MABP1-WDR62_2nd	PF24782	400 - 569	2e-08	MABP1/WDR62 second WD40 domain
Beta-prop_EML	PF23409	401 - 535	4.1e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_CAF1B_HIR1	PF24105	402 - 535	1.5e-16	CAF1B/HIR1 beta-propeller domain
Beta-prop_Aladin	PF25460	407 - 459	8.3e-06	Aladin seven-bladed propeller
WDR90_beta-prop_4th	PF23342	408 - 532	7.9e-10	WDR90, 4th beta-propeller
WD40_MABP1-WDR62_1st	PF24780	414 - 535	3.5e-06	MABP1/WDR62 first WD40 domain
Beta-prop_WDR41	PF25178	419 - 543	4.9e-06	WDR41
WD40	PF00400	438 - 484	5.1e-06	WD domain, G-beta repeat
Beta-prop_EML_2	PF23414	464 - 567	2.5e-08	Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz	PF24807	467 - 564	4.4e-11	CDC20/Fizzy WD40 domain
Beta-prop_IFT122_1st	PF23381	467 - 560	3e-12	IFT122 first beta-propeller
Beta-prop_WDR3_1st	PF25173	467 - 563	3.2e-17	WDR3 first beta-propeller domain
WDR55	PF24796	468 - 537	3.1e-06	WDR55
Beta-prop_TEP1_2nd	PF25047	469 - 530	7.5e-08	TEP-1 second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	470 - 557	3.2e-06	WDR90/POC16, second beta-propeller
EIF3I	PF24805	470 - 559	3.1e-09	EIF3I
Beta-prop_THOC3	PF25174	470 - 569	3e-21	THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	471 - 519	3.1e-06	WDR36/Utp21 second beta-propeller domain
WD40_Gbeta	PF25391	473 - 569	3.3e-11	G protein beta WD-40 repeat protein
WD40	PF00400	488 - 526	5.9e-12	WD domain, G-beta repeat
Beta-prop_Aladin	PF25460	496 - 565	9.3e-07	Aladin seven-bladed propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67320
fragaria_vesca	FvH4_1g16940 FvH4_2g33540 FvH4_2g33540 FvH4_2g33540 FvH4_2g33540 FvH4_2g33540
malus_domestica	MD02G1179800.v1.1 MD15G1075300.v1.1 MD15G1290400.v1.1
prunus_persica	Prupe.1G428200_v2.0.a1 Prupe.1G428200_v2.0.a1 Prupe.6G226500_v2.0.a1 Prupe.6G226500_v2.0.a1
pyrus_communis	pycom02g14570 pycom15g07030 pycom15g25410
rosa_chinensis	RchiOBHm_Chr2g0107021 RchiOBHm_Chr6g0308951
rosa_laevigata	RLG00000010601 RLG00000017550
rosa_multiflora	Rmu_sc0007106.1_g000002 Rmu_sc0030997.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136680 Rroxscaffold_7G00159780
rosa_rugosa	Rorug02G0140000
rosa_samantha	Rh2AG190800 Rh2BG202300 Rh2CG195500 Rh2DG197800 Rh6AG481200 Rh6BG490300 Rh6CG495600 Rh6DG481500
rosa_wichuraiana	Rw2G015040 Rw6G041920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1405
AciI	CCGC	2 cut(s)	1186, 1620
AclWI	GGATC	6 cut(s)	709, 1235, 1248, 1490, 1503, 1555
AcoI	YGGCCR	2 cut(s)	746, 1539
AcsI	RAATTY	4 cut(s)	127, 310, 410, 918
AcuI	CTGAAG	2 cut(s)	35, 158
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	4 cut(s)	179, 370, 928, 949
AfiI	CCNNNNNNNGG	1 cut(s)	1405
AgsI	TTSAA	6 cut(s)	164, 416, 609, 955, 1483, 1631
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	9 cut(s)	25, 451, 575, 605, 737, 765, 1143, 1444, 1479
AluI	AGCT	9 cut(s)	25, 451, 575, 605, 737, 765, 1143, 1444, 1479
Alw21I	GWGCWC	3 cut(s)	27, 148, 1145
AlwI	GGATC	6 cut(s)	709, 1235, 1248, 1490, 1503, 1555
AoxI	GGCC	4 cut(s)	96, 658, 746, 1539
ApeKI	GCWGC	1 cut(s)	1664
ApoI	RAATTY	4 cut(s)	127, 310, 410, 918
AspLEI	GCGC	1 cut(s)	1119
AspS9I	GGNCC	4 cut(s)	505, 968, 1094, 1376
AsuC2I	CCSGG	1 cut(s)	1380
AsuHPI	GGTGA	5 cut(s)	4, 947, 1229, 1541, 1664
AvaII	GGWCC	4 cut(s)	505, 968, 1094, 1376
BalI	TGGCCA	2 cut(s)	748, 1541
BamHI	GGATCC	2 cut(s)	1240, 1495
BanII	GRGCYC	2 cut(s)	27, 1145
BauI	CACGAG	1 cut(s)	372
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	3 cut(s)	27, 148, 1145
BbvI	GCAGC	1 cut(s)	1651
BccI	CCATC	6 cut(s)	17, 116, 181, 752, 899, 1356
BciT130I	CCWGG	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	1380
BfaI	CTAG	7 cut(s)	86, 395, 452, 633, 653, 768, 1460
BfmI	CTRYAG	5 cut(s)	117, 528, 579, 732, 1474
BglII	AGATCT	2 cut(s)	253, 770
BisI	GCNGC	1 cut(s)	1665
BlsI	GCNGC	1 cut(s)	1666
BmcAI	AGTACT	2 cut(s)	179, 949
Bme1390I	CCNGG	2 cut(s)	141, 1380
Bme18I	GGWCC	4 cut(s)	505, 968, 1094, 1376
BmgT120I	GGNCC	4 cut(s)	505, 968, 1094, 1376
BmiI	GGNNCC	4 cut(s)	970, 1242, 1378, 1497
BmrFI	CCNGG	2 cut(s)	141, 1380
BmsI	GCATC	3 cut(s)	202, 505, 722
BpiI	GAAGAC	1 cut(s)	31
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BpmI	CTGGAG	1 cut(s)	744
BpuEI	CTTGAG	2 cut(s)	220, 365
BpuMI	CCSGG	1 cut(s)	1380
BsaBI	GATNNNNATC	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	1405
Bse118I	RCCGGY	2 cut(s)	98, 1610
Bse1I	ACTGG	5 cut(s)	703, 898, 1118, 1252, 1542
Bse3DI	GCAATG	2 cut(s)	1143, 1621
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	141
BseGI	GGATG	3 cut(s)	258, 1054, 1456
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	1 cut(s)	1405
BseMI	GCAATG	2 cut(s)	1143, 1621
BseMII	CTCAG	2 cut(s)	629, 660
BseNI	ACTGG	5 cut(s)	703, 898, 1118, 1252, 1542
BseXI	GCAGC	1 cut(s)	1651
BshFI	GGCC	4 cut(s)	98, 660, 748, 1541
BsiHKAI	GWGCWC	3 cut(s)	27, 148, 1145
BsiSI	CCGG	3 cut(s)	99, 1380, 1611
BslFI	GGGAC	1 cut(s)	954
BslI	CCNNNNNNNGG	1 cut(s)	1405
BsmFI	GGGAC	1 cut(s)	954
BsmI	GAATGC	1 cut(s)	1336
BsnI	GGCC	4 cut(s)	98, 660, 748, 1541
Bsp1286I	GDGCHC	3 cut(s)	27, 148, 1145
Bsp143I	GATC	6 cut(s)	253, 701, 770, 1240, 1495, 1547
BspACI	CCGC	2 cut(s)	1186, 1620
BspANI	GGCC	4 cut(s)	98, 660, 748, 1541
BspCNI	CTCAG	2 cut(s)	628, 661
BspHI	TCATGA	2 cut(s)	499, 1321
BspLI	GGNNCC	4 cut(s)	970, 1242, 1378, 1497
BspMAI	CTGCAG	1 cut(s)	583
BspPI	GGATC	6 cut(s)	709, 1235, 1248, 1490, 1503, 1555
BsrDI	GCAATG	2 cut(s)	1143, 1621
BsrFI	RCCGGY	2 cut(s)	98, 1610
BsrI	ACTGG	5 cut(s)	703, 898, 1118, 1252, 1542
BssAI	RCCGGY	2 cut(s)	98, 1610
BssMI	GATC	6 cut(s)	253, 701, 770, 1240, 1495, 1547
BssSI	CACGAG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	1438, 1687
Bst6I	CTCTTC	1 cut(s)	711
BstAPI	GCANNNNNTGC	1 cut(s)	1673
BstC8I	GCNNGC	4 cut(s)	739, 888, 912, 1253
BstDEI	CTNAG	4 cut(s)	615, 669, 941, 1341
BstF5I	GGATG	3 cut(s)	258, 1054, 1456
BstHHI	GCGC	1 cut(s)	1119
BstKTI	GATC	6 cut(s)	256, 704, 773, 1243, 1498, 1550
BstMBI	GATC	6 cut(s)	253, 701, 770, 1240, 1495, 1547
BstMWI	GCNNNNNNNGC	2 cut(s)	493, 1673
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	3 cut(s)	624, 818, 1671
BstSCI	CCNGG	2 cut(s)	139, 1378
BstSFI	CTRYAG	5 cut(s)	117, 528, 579, 732, 1474
BstV1I	GCAGC	1 cut(s)	1651
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	6 cut(s)	253, 701, 770, 1240, 1495, 1547
BstYI	RGATCY	6 cut(s)	253, 701, 770, 1240, 1495, 1547
BsuRI	GGCC	4 cut(s)	98, 660, 748, 1541
BtsCI	GGATG	3 cut(s)	258, 1054, 1456
BtsI	GCAGTG	1 cut(s)	881
BtsIMutI	CAGTG	3 cut(s)	881, 1288, 1549
Cac8I	GCNNGC	4 cut(s)	739, 888, 912, 1253
CciI	TCATGA	2 cut(s)	499, 1321
CfoI	GCGC	1 cut(s)	1119
Cfr10I	RCCGGY	2 cut(s)	98, 1610
Cfr13I	GGNCC	4 cut(s)	505, 968, 1094, 1376
CseI	GACGC	1 cut(s)	1410
CsiI	ACCWGGT	1 cut(s)	139
Csp6I	GTAC	4 cut(s)	178, 369, 927, 948
CviAII	CATG	9 cut(s)	356, 500, 560, 621, 815, 1266, 1300, 1322, 1668
CviQI	GTAC	4 cut(s)	178, 369, 927, 948
DdeI	CTNAG	4 cut(s)	615, 669, 941, 1341
DpnI	GATC	6 cut(s)	255, 703, 772, 1242, 1497, 1549
DpnII	GATC	6 cut(s)	253, 701, 770, 1240, 1495, 1547
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	2 cut(s)	746, 1539
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Ecl136II	GAGCTC	2 cut(s)	25, 1143
Eco24I	GRGCYC	2 cut(s)	27, 1145
Eco32I	GATATC	2 cut(s)	595, 1279
Eco47I	GGWCC	4 cut(s)	505, 968, 1094, 1376
Eco53kI	GAGCTC	2 cut(s)	25, 1143
Eco57I	CTGAAG	2 cut(s)	35, 158
EcoICRI	GAGCTC	2 cut(s)	25, 1143
EcoO109I	RGGNCCY	2 cut(s)	968, 1376
EcoRII	CCWGG	1 cut(s)	139
EcoRV	GATATC	2 cut(s)	595, 1279
EcoT22I	ATGCAT	1 cut(s)	1569
EcoT38I	GRGCYC	2 cut(s)	27, 1145
FaeI	CATG	9 cut(s)	359, 503, 563, 624, 818, 1269, 1303, 1325, 1671
FalI	AAGNNNNNCTT	2 cut(s)	934, 966
FaqI	GGGAC	1 cut(s)	954
FatI	CATG	9 cut(s)	355, 499, 559, 620, 814, 1265, 1299, 1321, 1667
FauNDI	CATATG	1 cut(s)	901
Fnu4HI	GCNGC	1 cut(s)	1665
FokI	GGATG	3 cut(s)	245, 1061, 1463
FriOI	GRGCYC	2 cut(s)	27, 1145
Fsp4HI	GCNGC	1 cut(s)	1665
FspBI	CTAG	7 cut(s)	86, 395, 452, 633, 653, 768, 1460
GlaI	GCGC	1 cut(s)	1118
GluI	GCNGC	1 cut(s)	1665
GsuI	CTGGAG	1 cut(s)	744
HaeIII	GGCC	4 cut(s)	98, 660, 748, 1541
HapII	CCGG	3 cut(s)	99, 1380, 1611
HgaI	GACGC	1 cut(s)	1410
HhaI	GCGC	1 cut(s)	1119
Hin1II	CATG	9 cut(s)	359, 503, 563, 624, 818, 1269, 1303, 1325, 1671
Hin6I	GCGC	1 cut(s)	1117
HinP1I	GCGC	1 cut(s)	1117
HincII	GTYRAC	1 cut(s)	1111
HindII	GTYRAC	1 cut(s)	1111
HinfI	GANTC	7 cut(s)	56, 133, 691, 728, 856, 1366, 1430
HpaII	CCGG	3 cut(s)	99, 1380, 1611
HphI	GGTGA	5 cut(s)	4, 947, 1229, 1541, 1664
Hpy166II	GTNNAC	4 cut(s)	371, 779, 938, 1111
Hpy188I	TCNGA	5 cut(s)	640, 670, 1273, 1361, 1706
Hpy8I	GTNNAC	4 cut(s)	371, 779, 938, 1111
Hpy99I	CGWCG	2 cut(s)	23, 1514
HpyAV	CCTTC	9 cut(s)	313, 353, 379, 400, 650, 991, 1048, 1580, 1643
HpyCH4III	ACNGT	2 cut(s)	1438, 1687
HpyF10VI	GCNNNNNNNGC	2 cut(s)	493, 1673
HpyF3I	CTNAG	4 cut(s)	615, 669, 941, 1341
Hsp92II	CATG	9 cut(s)	359, 503, 563, 624, 818, 1269, 1303, 1325, 1671
HspAI	GCGC	1 cut(s)	1117
Kzo9I	GATC	6 cut(s)	253, 701, 770, 1240, 1495, 1547
LmnI	GCTCC	5 cut(s)	448, 484, 572, 1148, 1296
Lsp1109I	GCAGC	1 cut(s)	1651
LweI	GCATC	3 cut(s)	202, 505, 722
MabI	ACCWGGT	1 cut(s)	139
MaeI	CTAG	7 cut(s)	86, 395, 452, 633, 653, 768, 1460
MaeIII	GTNAC	4 cut(s)	643, 850, 1575, 1652
MalI	GATC	6 cut(s)	255, 703, 772, 1242, 1497, 1549
MboI	GATC	6 cut(s)	253, 701, 770, 1240, 1495, 1547
MboII	GAAGA	5 cut(s)	31, 41, 551, 575, 698
MfeI	CAATTG	2 cut(s)	287, 1038
MflI	RGATCY	6 cut(s)	253, 701, 770, 1240, 1495, 1547
MhlI	GDGCHC	3 cut(s)	27, 148, 1145
MlsI	TGGCCA	2 cut(s)	748, 1541
MluNI	TGGCCA	2 cut(s)	748, 1541
MlyI	GAGTC	4 cut(s)	700, 850, 1375, 1424
MmeI	TCCRAC	4 cut(s)	719, 1121, 1268, 1394
Mox20I	TGGCCA	2 cut(s)	748, 1541
Mph1103I	ATGCAT	1 cut(s)	1569
MscI	TGGCCA	2 cut(s)	748, 1541
MseI	TTAA	7 cut(s)	105, 273, 794, 819, 1194, 1224, 1328
MslI	CAYNNNNRTG	1 cut(s)	1215
Msp20I	TGGCCA	2 cut(s)	748, 1541
MspI	CCGG	3 cut(s)	99, 1380, 1611
MspR9I	CCNGG	2 cut(s)	141, 1380
MunI	CAATTG	2 cut(s)	287, 1038
Mva1269I	GAATGC	1 cut(s)	1336
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	493, 1673
NciI	CCSGG	1 cut(s)	1380
NdeI	CATATG	1 cut(s)	901
NdeII	GATC	6 cut(s)	253, 701, 770, 1240, 1495, 1547
NlaIII	CATG	9 cut(s)	359, 503, 563, 624, 818, 1269, 1303, 1325, 1671
NlaIV	GGNNCC	4 cut(s)	970, 1242, 1378, 1497
NmeAIII	GCCGAG	1 cut(s)	53
NmuCI	GTSAC	4 cut(s)	643, 850, 1575, 1652
NsiI	ATGCAT	1 cut(s)	1569
NspI	RCATGY	3 cut(s)	624, 818, 1671
PagI	TCATGA	2 cut(s)	499, 1321
PctI	GAATGC	1 cut(s)	1336
PfeI	GAWTC	3 cut(s)	56, 133, 728
PflMI	CCANNNNNTGG	1 cut(s)	1405
PkrI	GCNGC	1 cut(s)	1666
PleI	GAGTC	4 cut(s)	699, 850, 1374, 1424
PpsI	GAGTC	4 cut(s)	699, 850, 1374, 1424
PpuMI	RGGWCCY	2 cut(s)	968, 1376
Psp124BI	GAGCTC	2 cut(s)	27, 1145
Psp5II	RGGWCCY	2 cut(s)	968, 1376
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	4 cut(s)	970, 1242, 1378, 1497
PspPI	GGNCC	4 cut(s)	505, 968, 1094, 1376
PspPPI	RGGWCCY	2 cut(s)	968, 1376
PstI	CTGCAG	1 cut(s)	583
PsuI	RGATCY	6 cut(s)	253, 701, 770, 1240, 1495, 1547
RsaI	GTAC	4 cut(s)	179, 370, 928, 949
RsaNI	GTAC	4 cut(s)	178, 369, 927, 948
RseI	CAYNNNNRTG	1 cut(s)	1215
SacI	GAGCTC	2 cut(s)	27, 1145
SaqAI	TTAA	7 cut(s)	105, 273, 794, 819, 1194, 1224, 1328
SatI	GCNGC	1 cut(s)	1665
Sau3AI	GATC	6 cut(s)	253, 701, 770, 1240, 1495, 1547
Sau96I	GGNCC	4 cut(s)	505, 968, 1094, 1376
ScaI	AGTACT	2 cut(s)	179, 949
SchI	GAGTC	4 cut(s)	700, 850, 1375, 1424
ScrFI	CCNGG	2 cut(s)	141, 1380
SduI	GDGCHC	3 cut(s)	27, 148, 1145
SexAI	ACCWGGT	1 cut(s)	139
SfaNI	GCATC	3 cut(s)	202, 505, 722
SfcI	CTRYAG	5 cut(s)	117, 528, 579, 732, 1474
SinI	GGWCC	4 cut(s)	505, 968, 1094, 1376
SmiMI	CAYNNNNRTG	1 cut(s)	1215
SmlI	CTYRAG	2 cut(s)	199, 344
SmoI	CTYRAG	2 cut(s)	199, 344
SsiI	CCGC	2 cut(s)	1186, 1620
SspMI	CTAG	7 cut(s)	86, 395, 452, 633, 653, 768, 1460
SstI	GAGCTC	2 cut(s)	27, 1145
StyD4I	CCNGG	2 cut(s)	139, 1378
TaaI	ACNGT	2 cut(s)	1438, 1687
TaqI	TCGA	2 cut(s)	21, 599
TatI	WGTACW	3 cut(s)	177, 926, 947
TfiI	GAWTC	3 cut(s)	56, 133, 728
Tru1I	TTAA	7 cut(s)	105, 273, 794, 819, 1194, 1224, 1328
Tru9I	TTAA	7 cut(s)	105, 273, 794, 819, 1194, 1224, 1328
TscAI	CASTG	3 cut(s)	888, 1288, 1549
TseFI	GTSAC	4 cut(s)	643, 850, 1575, 1652
TseI	GCWGC	1 cut(s)	1664
Tsp45I	GTSAC	4 cut(s)	643, 850, 1575, 1652
TspDTI	ATGAA	7 cut(s)	372, 576, 849, 1076, 1254, 1310, 1316
TspGWI	ACGGA	3 cut(s)	7, 32, 1498
TspRI	CASTG	3 cut(s)	888, 1288, 1549
Van91I	CCANNNNNTGG	1 cut(s)	1405
VpaK11BI	GGWCC	4 cut(s)	505, 968, 1094, 1376
XapI	RAATTY	4 cut(s)	127, 310, 410, 918
XbaI	TCTAGA	2 cut(s)	652, 767
XceI	RCATGY	3 cut(s)	624, 818, 1671
XspI	CTAG	7 cut(s)	86, 395, 452, 633, 653, 768, 1460
ZrmI	AGTACT	2 cut(s)	179, 949
Zsp2I	ATGCAT	1 cut(s)	1569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.