pycom15g25410

F-box-like WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
19819483 .. 19827337
7855 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g25410.7

Sequence Viewer

Length: 1578 bp
ATGACCTCCATCACCTCCGTCGAGTTGAATTTCCTAGTGTTTCGTTACCTTCAGGAATCAGGCTTCACACACTCAGCTTTTGCTTTAGGATATGAGGCCGGTATCAACAAATGCACTATAGATGGAAATTTGGTTCCACCTGGTGCCCTCATTACATTTATACAAAAAGGACTTCAGTACTTGGAGATGGAAGCTAACTTGAGTAATAGTGATGCAGATTTGGATGAAGATTTCTCATTTTTACAACCTTTAGATCTTATCACAAAGGATGTAAATCAACTAAGGCAAATGATTACAGAGAAAAGGAAGAATTCACAGATGGACAAAGACAAAGATAAAGAGCACGAGTCTTATCAAAAGAAAGATAAAGATAAGGAGCTTGAAAAAGAACATGACGGAGAACGTGCACGAGTAAGAGAGAAAGAAAGAAAAGAAAGGGAGAAGGATTTCGAAAAGGATAGAGAGAGGATAGAAAAGAATAAGGAGCGAGAAAAGCAGCGTGAGGACCGCAATGACAGAGATGTAGTTAGAGATCAAGAAGATAAAGTTAGTATCAGACATGAAGAAAATGGAGCTTCTGGAGGAGCAGAACCAATGGATATTCCTCTTACAGATGTTCAAATCCCTAGTTCTGATGTGACAATTTTGGAGGGGCATACTAATGAGGTATGTGCTTGTGCATGGAGTCCAGCAGGTTCTCTTCTTGCATCGGGGTCTGGAGATTCGACGGCTCGAATCTGGACCATTGCTGATGGAAGCTCCAGATTTAGTTCACAAAATGGTTCCTCAAATGTGTTGGTGCTGAAGCATGTTAAGGGTAGAACAAATGAAAAGAGTAAAGATGTGACGACACTTGACTGGAATGGAGAGGGAACAATGCTTGCAACTGGTTCGTATGATGGGCAAGCAAGAATTTGGAGTACAAAGGGTGAATTAATTAGTACTTTGAGCAAACATAAAGGGCCTATATTCTCTCTAAAGTGGAACAAAAAGGGAGATTACCTTCTTACGGGAAGCTGCGATAAAACTGCAATTGTGTGGGATGTAAAGGCAGAGGAACCGAAACAACAATTTGAATTTCATTCAGGTCCAACACTTGATGTTGACTGGCGCAACAATGTCTCCTTTGCAATGAGCTCAACAGACAATATGATATATGTCTGCAAGATTGGGGAAAACCACCCTGTTAAAACTTTTGCGGGACATCAGGGAGAAGTTAATTGTGTTAAATGGGATCCAACTGGTTCATTGTTGGCTTCATGTTCTGATGATAGCACTGCAAAGATATGGAGCATTAAGCAGGAAAAATATGTTCATGATTTAAGAGAGCATTCTAAGGAGATATACACTATCAGATGGAGTCCCACTGGACCAGGAACAAACAACCCTAACCAACAGTTGGTCCTAGCTAGTGCATCATTTGACTCCTTTGTGAAGCTATGGGATGTGGAACAAGGAAAGCTTCTCTGCAGCTTGGATGGACACAGGGAACCTGTTTATTCTGTTGCTTTTAGCCCAAATGGTGAGTATTTGGCCAGTGGATCGATCTTAATAAATCCATGCATATCTGGTCACTGA

Protein Analysis

526

Amino Acids

58.93

Weight (kDa)

5.41

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 683
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 1399
AciI CCGC 2 cut(s) 508, 1199
AclWI GGATC 3 cut(s) 1229, 1242, 1549
AcoI YGGCCR 1 cut(s) 1533
AcsI RAATTY 5 cut(s) 28, 127, 310, 912, 1076
AcuI CTGAAG 3 cut(s) 35, 158, 824
AdeI CACNNNGTG 1 cut(s) 143
AfaI GTAC 3 cut(s) 179, 922, 943
AfiI CCNNNNNNNGG 2 cut(s) 1009, 1399
AgsI TTSAA 4 cut(s) 28, 383, 620, 1076
AjnI CCWGG 2 cut(s) 139, 1372
AloI GAACNNNNNNTCC 2 cut(s) 117, 149
Alw21I GWGCWC 3 cut(s) 345, 409, 1139
Alw26I GTCTC 1 cut(s) 1126
Alw44I GTGCAC 1 cut(s) 405
AlwI GGATC 3 cut(s) 1229, 1242, 1549
AoxI GGCC 3 cut(s) 96, 962, 1533
ApaLI GTGCAC 1 cut(s) 405
ApeKI GCWGC 3 cut(s) 496, 1017, 1470
ApoI RAATTY 5 cut(s) 28, 127, 310, 912, 1076
AseI ATTAAT 1 cut(s) 935
Asp700I GAANNNNTTC 1 cut(s) 446
AspLEI GCGC 1 cut(s) 1113
AspS9I GGNCC 6 cut(s) 505, 741, 962, 1088, 1370, 1402
AsuHPI GGTGA 3 cut(s) 4, 941, 1535
AsuII TTCGAA 1 cut(s) 450
AvaII GGWCC 5 cut(s) 505, 741, 1088, 1370, 1402
BaeGI GKGCMC 2 cut(s) 148, 409
BalI TGGCCA 1 cut(s) 1535
BamHI GGATCC 1 cut(s) 1234
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 1139
BauI CACGAG 2 cut(s) 344, 408
Bbv12I GWGCWC 3 cut(s) 345, 409, 1139
BbvI GCAGC 3 cut(s) 508, 1004, 1482
BccI CCATC 8 cut(s) 17, 116, 181, 313, 746, 893, 1350, 1472
BceAI ACGGC 1 cut(s) 744
BcgI CGANNNNNNTGC 4 cut(s) 873, 907, 1010, 1044
BciT130I CCWGG 2 cut(s) 141, 1374
BcoDI GTCTC 1 cut(s) 1126
BfaI CTAG 4 cut(s) 35, 627, 1406, 1410
BfmI CTRYAG 2 cut(s) 117, 1468
BfuAI ACCTGC 1 cut(s) 683
BglII AGATCT 1 cut(s) 253
BisI GCNGC 3 cut(s) 497, 1018, 1471
BlsI GCNGC 3 cut(s) 498, 1019, 1472
BmcAI AGTACT 2 cut(s) 179, 943
Bme1390I CCNGG 2 cut(s) 141, 1374
Bme18I GGWCC 5 cut(s) 505, 741, 1088, 1370, 1402
BmgT120I GGNCC 6 cut(s) 505, 741, 962, 1088, 1370, 1402
BmiI GGNNCC 6 cut(s) 135, 145, 784, 1059, 1236, 1491
BmrFI CCNGG 2 cut(s) 141, 1374
BmsI GCATC 3 cut(s) 202, 716, 1424
BpmI CTGGAG 3 cut(s) 600, 738, 745
Bpu14I TTCGAA 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 220
Bsa29I ATCGAT 1 cut(s) 1544
BsaBI GATNNNNATC 1 cut(s) 273
BsaXI ACNNNNNCTCC 2 cut(s) 1106, 1136
Bsc4I CCNNNNNNNGG 2 cut(s) 1009, 1399
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 6 cut(s) 863, 892, 1112, 1246, 1372, 1536
Bse3DI GCAATG 3 cut(s) 517, 744, 1137
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 2 cut(s) 141, 1374
BseCI ATCGAT 1 cut(s) 1544
BseGI GGATG 5 cut(s) 229, 274, 1048, 1450, 1483
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 2 cut(s) 1009, 1399
BseMI GCAATG 3 cut(s) 517, 744, 1137
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 6 cut(s) 863, 892, 1112, 1246, 1372, 1536
BseRI GAGGAG 1 cut(s) 597
BseSI GKGCMC 2 cut(s) 148, 409
BseXI GCAGC 3 cut(s) 508, 1004, 1482
BshFI GGCC 3 cut(s) 98, 964, 1535
BshNI GGYRCC 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 1544
BsiHKAI GWGCWC 3 cut(s) 345, 409, 1139
BsiSI CCGG 1 cut(s) 99
BslFI GGGAC 2 cut(s) 1215, 1347
BslI CCNNNNNNNGG 2 cut(s) 1009, 1399
BsmAI GTCTC 1 cut(s) 1126
BsmFI GGGAC 2 cut(s) 1215, 1347
BsmI GAATGC 1 cut(s) 1330
BsnI GGCC 3 cut(s) 98, 964, 1535
Bsp119I TTCGAA 1 cut(s) 450
Bsp1286I GDGCHC 4 cut(s) 148, 345, 409, 1139
Bsp143I GATC 5 cut(s) 253, 532, 1234, 1541, 1545
BspACI CCGC 2 cut(s) 508, 1199
BspANI GGCC 3 cut(s) 98, 964, 1535
BspCNI CTCAG 1 cut(s) 86
BspDI ATCGAT 1 cut(s) 1544
BspHI TCATGA 1 cut(s) 1315
BspLI GGNNCC 6 cut(s) 135, 145, 784, 1059, 1236, 1491
BspMAI CTGCAG 1 cut(s) 1472
BspMI ACCTGC 1 cut(s) 683
BspPI GGATC 3 cut(s) 1229, 1242, 1549
BspT104I TTCGAA 1 cut(s) 450
BspT107I GGYRCC 1 cut(s) 143
BsrDI GCAATG 3 cut(s) 517, 744, 1137
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 6 cut(s) 863, 892, 1112, 1246, 1372, 1536
BssAI RCCGGY 1 cut(s) 98
BssMI GATC 5 cut(s) 253, 532, 1234, 1541, 1545
BssSI CACGAG 2 cut(s) 344, 408
Bst2BI CACGAG 2 cut(s) 344, 408
Bst2UI CCWGG 2 cut(s) 141, 1374
Bst4CI ACNGT 1 cut(s) 1398
Bst6I CTCTTC 1 cut(s) 705
BstBI TTCGAA 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 882, 906
BstDEI CTNAG 3 cut(s) 73, 281, 1335
BstF5I GGATG 5 cut(s) 229, 274, 1048, 1450, 1483
BstHHI GCGC 1 cut(s) 1113
BstKTI GATC 5 cut(s) 256, 535, 1237, 1544, 1548
BstMAI GTCTC 1 cut(s) 1126
BstMBI GATC 5 cut(s) 253, 532, 1234, 1541, 1545
BstMWI GCNNNNNNNGC 1 cut(s) 493
BstNI CCWGG 2 cut(s) 141, 1374
BstNSI RCATGY 1 cut(s) 812
BstSCI CCNGG 2 cut(s) 139, 1372
BstSFI CTRYAG 2 cut(s) 117, 1468
BstSLI GKGCMC 2 cut(s) 148, 409
BstV1I GCAGC 3 cut(s) 508, 1004, 1482
BstX2I RGATCY 2 cut(s) 253, 1234
BstYI RGATCY 2 cut(s) 253, 1234
Bsu15I ATCGAT 1 cut(s) 1544
BsuRI GGCC 3 cut(s) 98, 964, 1535
BsuTUI ATCGAT 1 cut(s) 1544
BtsCI GGATG 5 cut(s) 229, 274, 1048, 1450, 1483
BtsI GCAGTG 1 cut(s) 1275
BtsIMutI CAGTG 4 cut(s) 1275, 1365, 1543, 1573
BveI ACCTGC 1 cut(s) 683
Cac8I GCNNGC 2 cut(s) 882, 906
CciI TCATGA 1 cut(s) 1315
CfoI GCGC 1 cut(s) 1113
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 6 cut(s) 505, 741, 962, 1088, 1370, 1402
ClaI ATCGAT 1 cut(s) 1544
CsiI ACCWGGT 1 cut(s) 139
Csp6I GTAC 3 cut(s) 178, 921, 942
CviAII CATG 7 cut(s) 392, 560, 681, 809, 1260, 1316, 1560
CviQI GTAC 3 cut(s) 178, 921, 942
DdeI CTNAG 3 cut(s) 73, 281, 1335
DpnI GATC 5 cut(s) 255, 534, 1236, 1543, 1547
DpnII GATC 5 cut(s) 253, 532, 1234, 1541, 1545
DraIII CACNNNGTG 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 1533
Eam1104I CTCTTC 1 cut(s) 705
EarI CTCTTC 1 cut(s) 705
Ecl136II GAGCTC 1 cut(s) 1137
Eco24I GRGCYC 1 cut(s) 1139
Eco47I GGWCC 5 cut(s) 505, 741, 1088, 1370, 1402
Eco53kI GAGCTC 1 cut(s) 1137
Eco57I CTGAAG 3 cut(s) 35, 158, 824
EcoICRI GAGCTC 1 cut(s) 1137
EcoO109I RGGNCCY 1 cut(s) 962
EcoRI GAATTC 1 cut(s) 310
EcoRII CCWGG 2 cut(s) 139, 1372
EcoT22I ATGCAT 1 cut(s) 1565
EcoT38I GRGCYC 1 cut(s) 1139
FaeI CATG 7 cut(s) 395, 563, 684, 812, 1263, 1319, 1563
FalI AAGNNNNNCTT 2 cut(s) 1446, 1478
FaqI GGGAC 2 cut(s) 1215, 1347
FatI CATG 7 cut(s) 391, 559, 680, 808, 1259, 1315, 1559
FauI CCCGC 1 cut(s) 1192
Fnu4HI GCNGC 3 cut(s) 497, 1018, 1471
FokI GGATG 5 cut(s) 236, 281, 1055, 1457, 1490
FriOI GRGCYC 1 cut(s) 1139
Fsp4HI GCNGC 3 cut(s) 497, 1018, 1471
FspBI CTAG 4 cut(s) 35, 627, 1406, 1410
GlaI GCGC 1 cut(s) 1112
GluI GCNGC 3 cut(s) 497, 1018, 1471
GsuI CTGGAG 3 cut(s) 600, 738, 745
HaeIII GGCC 3 cut(s) 98, 964, 1535
HapII CCGG 1 cut(s) 99
HhaI GCGC 1 cut(s) 1113
Hin1II CATG 7 cut(s) 395, 563, 684, 812, 1263, 1319, 1563
Hin6I GCGC 1 cut(s) 1111
HinP1I GCGC 1 cut(s) 1111
HincII GTYRAC 1 cut(s) 1105
HindII GTYRAC 1 cut(s) 1105
HindIII AAGCTT 1 cut(s) 1460
HinfI GANTC 7 cut(s) 56, 347, 685, 722, 735, 1360, 1424
HpaII CCGG 1 cut(s) 99
HphI GGTGA 3 cut(s) 4, 941, 1535
Hpy166II GTNNAC 3 cut(s) 407, 773, 1105
Hpy188I TCNGA 4 cut(s) 557, 634, 1267, 1355
Hpy188III TCNNGA 7 cut(s) 53, 536, 579, 717, 739, 762, 1316
Hpy8I GTNNAC 3 cut(s) 407, 773, 1105
Hpy99I CGWCG 2 cut(s) 23, 730
HpyAV CCTTC 3 cut(s) 59, 436, 1013
HpyCH4III ACNGT 1 cut(s) 1398
HpyCH4IV ACGT 1 cut(s) 403
HpyF10VI GCNNNNNNNGC 1 cut(s) 493
HpyF3I CTNAG 3 cut(s) 73, 281, 1335
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 7 cut(s) 395, 563, 684, 812, 1263, 1319, 1563
HspAI GCGC 1 cut(s) 1111
Kzo9I GATC 5 cut(s) 253, 532, 1234, 1541, 1545
LmnI GCTCC 6 cut(s) 376, 484, 572, 584, 764, 1290
Lsp1109I GCAGC 3 cut(s) 508, 1004, 1482
LweI GCATC 3 cut(s) 202, 716, 1424
MabI ACCWGGT 1 cut(s) 139
MaeI CTAG 4 cut(s) 35, 627, 1406, 1410
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 4 cut(s) 44, 637, 844, 1571
MalI GATC 5 cut(s) 255, 534, 1236, 1543, 1547
MboI GATC 5 cut(s) 253, 532, 1234, 1541, 1545
MboII GAAGA 5 cut(s) 239, 319, 551, 575, 692
MfeI CAATTG 1 cut(s) 1032
MflI RGATCY 2 cut(s) 253, 1234
MhlI GDGCHC 4 cut(s) 148, 345, 409, 1139
MlsI TGGCCA 1 cut(s) 1535
MluNI TGGCCA 1 cut(s) 1535
MlyI GAGTC 4 cut(s) 356, 694, 1369, 1418
MmeI TCCRAC 2 cut(s) 1115, 1262
Mox20I TGGCCA 1 cut(s) 1535
Mph1103I ATGCAT 1 cut(s) 1565
MroXI GAANNNNTTC 1 cut(s) 446
MscI TGGCCA 1 cut(s) 1535
MseI TTAA 8 cut(s) 813, 935, 1188, 1218, 1227, 1296, 1322, 1550
MslI CAYNNNNRTG 1 cut(s) 660
Msp20I TGGCCA 1 cut(s) 1535
MspI CCGG 1 cut(s) 99
MspR9I CCNGG 2 cut(s) 141, 1374
MunI CAATTG 1 cut(s) 1032
Mva1269I GAATGC 1 cut(s) 1330
MvaI CCWGG 2 cut(s) 141, 1374
MwoI GCNNNNNNNGC 1 cut(s) 493
NdeII GATC 5 cut(s) 253, 532, 1234, 1541, 1545
NlaIII CATG 7 cut(s) 395, 563, 684, 812, 1263, 1319, 1563
NlaIV GGNNCC 6 cut(s) 135, 145, 784, 1059, 1236, 1491
NmuCI GTSAC 3 cut(s) 637, 844, 1571
NsiI ATGCAT 1 cut(s) 1565
NspI RCATGY 1 cut(s) 812
NspV TTCGAA 1 cut(s) 450
PagI TCATGA 1 cut(s) 1315
PctI GAATGC 1 cut(s) 1330
PdmI GAANNNNTTC 1 cut(s) 446
PfeI GAWTC 3 cut(s) 56, 722, 735
PflMI CCANNNNNTGG 1 cut(s) 1399
PkrI GCNGC 3 cut(s) 498, 1019, 1472
PleI GAGTC 4 cut(s) 355, 693, 1368, 1418
PpsI GAGTC 4 cut(s) 355, 693, 1368, 1418
PshBI ATTAAT 1 cut(s) 935
Psp124BI GAGCTC 1 cut(s) 1139
Psp6I CCWGG 2 cut(s) 139, 1372
PspGI CCWGG 2 cut(s) 139, 1372
PspN4I GGNNCC 6 cut(s) 135, 145, 784, 1059, 1236, 1491
PspPI GGNCC 6 cut(s) 505, 741, 962, 1088, 1370, 1402
PstI CTGCAG 1 cut(s) 1472
PsuI RGATCY 2 cut(s) 253, 1234
RsaI GTAC 3 cut(s) 179, 922, 943
RsaNI GTAC 3 cut(s) 178, 921, 942
RseI CAYNNNNRTG 1 cut(s) 660
SacI GAGCTC 1 cut(s) 1139
SaqAI TTAA 8 cut(s) 813, 935, 1188, 1218, 1227, 1296, 1322, 1550
SatI GCNGC 3 cut(s) 497, 1018, 1471
Sau3AI GATC 5 cut(s) 253, 532, 1234, 1541, 1545
Sau96I GGNCC 6 cut(s) 505, 741, 962, 1088, 1370, 1402
ScaI AGTACT 2 cut(s) 179, 943
SchI GAGTC 4 cut(s) 356, 694, 1369, 1418
ScrFI CCNGG 2 cut(s) 141, 1374
SduI GDGCHC 4 cut(s) 148, 345, 409, 1139
SexAI ACCWGGT 1 cut(s) 139
SfaNI GCATC 3 cut(s) 202, 716, 1424
SfcI CTRYAG 2 cut(s) 117, 1468
SfuI TTCGAA 1 cut(s) 450
SinI GGWCC 5 cut(s) 505, 741, 1088, 1370, 1402
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
SsiI CCGC 2 cut(s) 508, 1199
SspMI CTAG 4 cut(s) 35, 627, 1406, 1410
SstI GAGCTC 1 cut(s) 1139
StyD4I CCNGG 2 cut(s) 139, 1372
TaaI ACNGT 1 cut(s) 1398
TaiI ACGT 1 cut(s) 406
TaqI TCGA 5 cut(s) 21, 450, 725, 733, 1544
TatI WGTACW 3 cut(s) 177, 920, 941
TfiI GAWTC 3 cut(s) 56, 722, 735
Tru1I TTAA 8 cut(s) 813, 935, 1188, 1218, 1227, 1296, 1322, 1550
Tru9I TTAA 8 cut(s) 813, 935, 1188, 1218, 1227, 1296, 1322, 1550
TscAI CASTG 3 cut(s) 1282, 1372, 1543
TseFI GTSAC 3 cut(s) 637, 844, 1571
TseI GCWGC 3 cut(s) 496, 1017, 1470
Tsp45I GTSAC 3 cut(s) 637, 844, 1571
TspDTI ATGAA 7 cut(s) 240, 576, 843, 1070, 1236, 1248, 1304
TspGWI ACGGA 2 cut(s) 7, 411
TspRI CASTG 3 cut(s) 1282, 1372, 1543
Van91I CCANNNNNTGG 1 cut(s) 1399
VneI GTGCAC 1 cut(s) 405
VpaK11BI GGWCC 5 cut(s) 505, 741, 1088, 1370, 1402
VspI ATTAAT 1 cut(s) 935
XapI RAATTY 5 cut(s) 28, 127, 310, 912, 1076
XceI RCATGY 1 cut(s) 812
XmnI GAANNNNTTC 1 cut(s) 446
XspI CTAG 4 cut(s) 35, 627, 1406, 1410
ZrmI AGTACT 2 cut(s) 179, 943
Zsp2I ATGCAT 1 cut(s) 1565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.