Rroxscaffold_7G00159780

F-box-like WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0003410
Physical Location & Seq
Reverse (-)
2868385 .. 2872305
3921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159780.1

Sequence Viewer

Length: 1638 bp
ATGATCTCCATCAACTCCACCGAATTGAACTACCTGGTCTTCCGTTACCTCCATGAATCAGGCTTCACACATTCAGCTTATGCTTTCGGATTCGAGGCGGGGATCAACAAGAGCACGGTTGATGGTAACCTAGTTCCGCCTGGTGCACTTGTTACGTTTCTCCAGAAAGGCCTTCAGTTTCTTGAGCTGGAGGCGGACTTAGGCAATGGTAGTGATGCGGATATGGAGGATGACTTTTCGTTCCTGCAACCGTTGGATTTTATCACAAAAGATGCGTATCAATTGCAGAAAATTGTCAGGGAAAAGAAGGATAGGATGAATGCTGCTAACAATGAGTCCAAGCAGGAAAGCGAAAGGGAAGTAGAGGTGGAGAGAAAAGAAGAAGAGATTCGAGACGATAAGTCGGAGAAGGATAGGGAGCAGGAGATTGGTAAAGAGGAGGAGAAGTCGAATCAGGATCGAAGTGAGATGGAGAAGGTGGAGCCTGAAGAAAATGGAACTGGTGGAGGGGTGGAGTCAATGGAGACCTCCCCAAGCTCAACGTTCGTGCCTGGTGAAATTCCTAGTAGTGATGTCATAGTTCTAGAAGGGCATACCTCAGAGGTTTTTGCTTGCGCATGGAGTCCATCTGATTCGCTTCTTGCATCTGGTTCTGGGGATTCAACAGCTCGAATTTGGACCATTGCCAGTGGAAGTTGTAGATCTAGCATTCAAAATGAACCTGCACGCGTGTTAAAGCATTTCAAAGGGAGAGCCAATGAGAAAAGCAAGGATGTGACTACACTTGATTGGAATGATGATGGAAAGTTACTAGCAACAGGTTCCTATGATGGGCAAGCAAGAATATGGGGTAGAGACGGAGAGTTAATGACTACTTTGATCAGACATAAGGGGCCAATCTTTTCTCTGAAGTGGAACAAAGAAGGTGATTATCTTTTGAGTGGAAGTGTGGATAAAACTGCAATTGTGTGGGACATAAAGACTGGCGAATGGAAACAACAGTTTGAATTTCATTCAGCTCCAACTCTGGATGTTGATTGGCGAGACAATACTTCTTTTGCAACATGCTCTACTGATGGTATGATACATGTTTGCAAGGTTGGAGAGAACCAACCAATTAAAACTTTCTTAGGCCATCAGGGTGAAGTTAATGCTATTAAGTGGGATCCGACCGGCTCATTATTGGCTTCTTGCTCTGATGATCATACAGCAAAGATATGGAGTATGAAGCAAGACAAATATTTGCATGATTTGAAGGAACATGTTAAGGAGATATATACCATCCGGTGGAGTCCTACAGGACCTGGATCACATAATCCAAATCAACAATTAGTGCTAGCAAGCGCTTCCTTTGATTCACGCGTAAAACTATGGGATGTGGAACTAGGGACACTTATCTACAGCTTATATGGCCACAGGGATCCGGTATACTCTGTTGCATTTAGCCCTAATGGTGAGTACTTGGCCAGTGGATCTATGGACAAATGCATGCACATATGGTCTGTGAAGGAAGGCAAAATCGTAAAAACATACACCGGAAATGGTGGAATATTCGAAGTTTGTTGGAACAAAGATGGCGATAAGATAGCTGCTTGTTTTGCTAATAATAATGTATGTGTTGTGGATTTCCGAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0001067 GO:0002021 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006508 GO:0006511 GO:0006629 GO:0006807 GO:0006996 GO:0007275 GO:0008013 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0015630 GO:0016042 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0017053 GO:0019216 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0023051 GO:0023056 GO:0030111 GO:0030154 GO:0030163 GO:0030177 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031667 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0035264 GO:0035601 GO:0036211 GO:0040007 GO:0042393 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044212 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0045444 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0047485 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050872 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051603 GO:0060255 GO:0060612 GO:0060613 GO:0060828 GO:0061448 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090207 GO:0090263 GO:0097159 GO:0098732 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140110 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04310 map04013 map04310
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

545

Amino Acids

60.85

Weight (kDa)

4.97

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 8 - 32 1.8e-06 LisH
WD40_WDHD1_1st PF24817 189 - 238 4.4e-06 WDHD1 first WD40 domain
WD40 PF00400 192 - 226 2e-09 WD domain, G-beta repeat
Beta-prop_WDR5 PF25175 192 - 239 2.1e-09 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 192 - 244 2.6e-06 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 193 - 239 6e-06 CDC20/Fizzy WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 195 - 285 7.5e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3 PF25174 195 - 238 4.2e-07 THOC3 beta-propeller domain
Beta-prop_EML PF23409 196 - 330 1.5e-11 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_Aladin PF25460 201 - 330 2.7e-10 Aladin seven-bladed propeller
Beta-prop_EML_2 PF23414 251 - 360 5e-10 Echinoderm microtubule-associated protein second beta-propeller
WD40_Prp19 PF24814 252 - 331 2.9e-10 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 253 - 347 1.1e-14 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 253 - 376 7.4e-24 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 256 - 338 1.3e-11 WDHD1 first WD40 domain
WD40 PF00400 256 - 283 2.9e-07 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 256 - 492 1.4e-44 THOC3 beta-propeller domain
WDR55 PF24796 257 - 416 2.5e-13 WDR55
EIF3I PF24805 257 - 360 1.7e-11 EIF3I
Beta-prop_WDR3_2nd PF25172 259 - 366 1.3e-09 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 259 - 501 3e-11 WDR36/Utp21 first beta-propeller
Beta-prop_WDR19_1st PF23389 262 - 358 5.6e-06 WDR19 first beta-propeller
WD40 PF00400 288 - 325 1.7e-07 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 291 - 459 6.6e-13 TEP-1 second beta-propeller
WD40_CDC20-Fz PF24807 292 - 466 1.6e-26 CDC20/Fizzy WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 292 - 371 2.8e-09 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 296 - 434 1.6e-11 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 308 - 540 3.7e-36 Prp19 WD40 domain
WD40_Gbeta PF25391 310 - 415 6e-12 G protein beta WD-40 repeat protein
WD40_WDHD1_1st PF24817 343 - 539 2.9e-29 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 348 - 432 4.9e-15 WDR3 first beta-propeller domain
Beta-prop_EML_2 PF23414 349 - 432 1.2e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 350 - 543 1.4e-40 WDR5 beta-propeller domain
Beta-prop_Vps41 PF23411 351 - 414 4e-06 Vps42 beta-propeller
Beta-prop_WDR3_2nd PF25172 355 - 536 1.8e-16 WDR3 second beta-propeller domain
ANAPC4_WD40 PF12894 355 - 431 5.4e-06 Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 357 - 501 9.7e-08 WDR36/Utp21 first beta-propeller
WD40 PF00400 371 - 408 4.2e-11 WD domain, G-beta repeat
EIF3I PF24805 376 - 486 1.1e-08 EIF3I
Beta-prop_CAF1B_HIR1 PF24105 378 - 509 2.1e-14 CAF1B/HIR1 beta-propeller domain
WDR90_beta-prop_4th PF23342 383 - 509 1.7e-08 WDR90, 4th beta-propeller
WD40_MABP1-WDR62_1st PF24780 389 - 524 1.9e-06 MABP1/WDR62 first WD40 domain
Beta-prop_SCAP PF24017 395 - 503 8.8e-06 SCAP Beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 417 - 510 3.1e-09 CAF1B/HIR1 beta-propeller domain
Beta-prop_EML_2 PF23414 439 - 541 3.3e-08 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 442 - 541 4.3e-11 CDC20/Fizzy WD40 domain
Beta-prop_IFT122_1st PF23381 442 - 534 7.6e-13 IFT122 first beta-propeller
Beta-prop_WDR3_1st PF25173 442 - 538 8.9e-17 WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd PF25047 444 - 506 5.4e-08 TEP-1 second beta-propeller
EIF3I PF24805 445 - 533 1.2e-08 EIF3I
Beta-prop_THOC3 PF25174 445 - 544 1.8e-20 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 446 - 494 4.5e-06 WDR36/Utp21 second beta-propeller domain
WD40_Gbeta PF25391 448 - 544 1.1e-09 G protein beta WD-40 repeat protein
WD40 PF00400 463 - 501 7.6e-12 WD domain, G-beta repeat
WD40_RFWD3 PF23419 472 - 544 3e-06 E3 ubiquitin-protein ligase RFWD3 WD40 domain
Beta-prop_Aladin PF25460 473 - 535 2.1e-07 Aladin seven-bladed propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 616
Acc36I ACCTGC 1 cut(s) 730
AccB7I CCANNNNNTGG 1 cut(s) 1287
AccI GTMKAC 1 cut(s) 1428
AccII CGCG 2 cut(s) 729, 1362
AciI CCGC 4 cut(s) 98, 137, 194, 218
AclI AACGTT 1 cut(s) 542
AclWI GGATC 8 cut(s) 110, 465, 1160, 1173, 1315, 1415, 1428, 1480
AcoI YGGCCR 2 cut(s) 1411, 1464
AcsI RAATTY 3 cut(s) 558, 672, 1007
AcuI CTGAAG 3 cut(s) 158, 507, 929
AfaI GTAC 1 cut(s) 1460
AfeI AGCGCT 1 cut(s) 1345
AfiI CCNNNNNNNGG 2 cut(s) 831, 1287
AflIII ACRYGT 4 cut(s) 727, 1087, 1261, 1360
AgsI TTSAA 6 cut(s) 28, 663, 713, 745, 1007, 1255
AhdI GACNNNNNGTC 1 cut(s) 400
AjnI CCWGG 4 cut(s) 33, 139, 550, 1303
AluBI AGCT 7 cut(s) 77, 187, 537, 668, 1019, 1404, 1589
AluI AGCT 7 cut(s) 77, 187, 537, 668, 1019, 1404, 1589
Alw21I GWGCWC 2 cut(s) 116, 148
Alw26I GTCTC 4 cut(s) 387, 518, 849, 1038
Alw44I GTGCAC 1 cut(s) 144
AlwI GGATC 8 cut(s) 110, 465, 1160, 1173, 1315, 1415, 1428, 1480
AlwNI CAGNNNCTG 1 cut(s) 1304
Aor51HI AGCGCT 1 cut(s) 1345
AoxI GGCC 5 cut(s) 169, 893, 1132, 1411, 1464
ApaLI GTGCAC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 323, 1589
ApoI RAATTY 3 cut(s) 558, 672, 1007
Asp700I GAANNNNTTC 1 cut(s) 387
AspLEI GCGC 2 cut(s) 617, 1346
AspS9I GGNCC 3 cut(s) 678, 893, 1301
AsuHPI GGTGA 4 cut(s) 566, 938, 1154, 1466
AsuII TTCGAA 1 cut(s) 1554
AsuNHI GCTAGC 1 cut(s) 1336
AvaII GGWCC 2 cut(s) 678, 1301
BaeGI GKGCMC 1 cut(s) 148
BalI TGGCCA 2 cut(s) 1413, 1466
BamHI GGATCC 2 cut(s) 1165, 1420
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 2 cut(s) 116, 148
BbvI GCAGC 2 cut(s) 310, 1576
BciT130I CCWGG 4 cut(s) 35, 141, 552, 1305
BclI TGATCA 2 cut(s) 879, 1201
BcoDI GTCTC 4 cut(s) 387, 518, 849, 1038
BfaI CTAG 7 cut(s) 131, 564, 584, 705, 812, 1337, 1385
BfmI CTRYAG 2 cut(s) 1296, 1399
BfoI RGCGCY 1 cut(s) 1347
BfuAI ACCTGC 1 cut(s) 730
BglII AGATCT 1 cut(s) 701
BisI GCNGC 2 cut(s) 324, 1590
BlsI GCNGC 2 cut(s) 325, 1591
BmcAI AGTACT 1 cut(s) 1460
Bme1390I CCNGG 4 cut(s) 35, 141, 552, 1305
Bme18I GGWCC 2 cut(s) 678, 1301
BmeRI GACNNNNNGTC 1 cut(s) 400
BmgT120I GGNCC 3 cut(s) 678, 893, 1301
BmiI GGNNCC 5 cut(s) 483, 823, 894, 1167, 1422
BmrFI CCNGG 4 cut(s) 35, 141, 552, 1305
BmsI GCATC 3 cut(s) 205, 262, 653
BmtI GCTAGC 1 cut(s) 1340
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 146, 209
Bpu14I TTCGAA 1 cut(s) 1554
BpuEI CTTGAG 1 cut(s) 203
BsaBI GATNNNNATC 2 cut(s) 8, 276
BsaI GGTCTC 1 cut(s) 518
BsaWI WCCGGW 3 cut(s) 1284, 1423, 1535
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 2 cut(s) 831, 1287
Bse118I RCCGGY 1 cut(s) 1172
Bse1I ACTGG 4 cut(s) 505, 687, 988, 1467
Bse3DI GCAATG 2 cut(s) 211, 681
Bse8I GATNNNNATC 2 cut(s) 8, 276
BseBI CCWGG 4 cut(s) 35, 141, 552, 1305
BseGI GGATG 6 cut(s) 235, 321, 778, 1036, 1281, 1381
BseJI GATNNNNATC 2 cut(s) 8, 276
BseLI CCNNNNNNNGG 2 cut(s) 831, 1287
BseMI GCAATG 2 cut(s) 211, 681
BseMII CTCAG 1 cut(s) 612
BseNI ACTGG 4 cut(s) 505, 687, 988, 1467
BseRI GAGGAG 2 cut(s) 452, 455
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 2 cut(s) 310, 1576
BsgI GTGCAG 1 cut(s) 708
Bsh1236I CGCG 2 cut(s) 729, 1362
Bsh1285I CGRYCG 1 cut(s) 1173
BshFI GGCC 5 cut(s) 171, 895, 1134, 1413, 1466
BsiEI CGRYCG 1 cut(s) 1173
BsiHKAI GWGCWC 2 cut(s) 116, 148
BsiSI CCGG 4 cut(s) 1173, 1285, 1424, 1536
BslFI GGGAC 2 cut(s) 986, 1402
BslI CCNNNNNNNGG 2 cut(s) 831, 1287
BsmAI GTCTC 4 cut(s) 387, 518, 849, 1038
BsmBI CGTCTC 2 cut(s) 387, 849
BsmFI GGGAC 2 cut(s) 986, 1402
BsmI GAATGC 2 cut(s) 325, 708
BsnI GGCC 5 cut(s) 171, 895, 1134, 1413, 1466
Bso31I GGTCTC 1 cut(s) 518
Bsp119I TTCGAA 1 cut(s) 1554
Bsp1286I GDGCHC 2 cut(s) 116, 148
BspACI CCGC 4 cut(s) 98, 137, 194, 218
BspANI GGCC 5 cut(s) 171, 895, 1134, 1413, 1466
BspCNI CTCAG 1 cut(s) 611
BspFNI CGCG 2 cut(s) 729, 1362
BspLI GGNNCC 5 cut(s) 483, 823, 894, 1167, 1422
BspMI ACCTGC 1 cut(s) 730
BspOI GCTAGC 1 cut(s) 1340
BspPI GGATC 8 cut(s) 110, 465, 1160, 1173, 1315, 1415, 1428, 1480
BspT104I TTCGAA 1 cut(s) 1554
BspTNI GGTCTC 1 cut(s) 518
BsrDI GCAATG 2 cut(s) 211, 681
BsrFI RCCGGY 1 cut(s) 1172
BsrI ACTGG 4 cut(s) 505, 687, 988, 1467
BssAI RCCGGY 1 cut(s) 1172
BssNAI GTATAC 1 cut(s) 1429
Bst1107I GTATAC 1 cut(s) 1429
Bst2UI CCWGG 4 cut(s) 35, 141, 552, 1305
Bst4CI ACNGT 3 cut(s) 118, 252, 1002
Bst6I CTCTTC 1 cut(s) 378
BstBI TTCGAA 1 cut(s) 1554
BstC8I GCNNGC 6 cut(s) 613, 727, 837, 1338, 1342, 1490
BstDEI CTNAG 3 cut(s) 199, 598, 1129
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 6 cut(s) 235, 321, 778, 1036, 1281, 1381
BstFNI CGCG 2 cut(s) 729, 1362
BstH2I RGCGCY 1 cut(s) 1347
BstHHI GCGC 2 cut(s) 617, 1346
BstMAI GTCTC 4 cut(s) 387, 518, 849, 1038
BstMCI CGRYCG 1 cut(s) 1173
BstMWI GCNNNNNNNGC 2 cut(s) 1410, 1598
BstNI CCWGG 4 cut(s) 35, 141, 552, 1305
BstNSI RCATGY 4 cut(s) 1068, 1091, 1265, 1492
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 4 cut(s) 33, 139, 550, 1303
BstSFI CTRYAG 2 cut(s) 1296, 1399
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 2 cut(s) 729, 1362
BstV1I GCAGC 2 cut(s) 310, 1576
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 4 cut(s) 701, 1165, 1420, 1472
BstYI RGATCY 4 cut(s) 701, 1165, 1420, 1472
BstZ17I GTATAC 1 cut(s) 1429
BsuRI GGCC 5 cut(s) 171, 895, 1134, 1413, 1466
BtsCI GGATG 6 cut(s) 235, 321, 778, 1036, 1281, 1381
BtsIMutI CAGTG 2 cut(s) 694, 1474
BveI ACCTGC 1 cut(s) 730
Cac8I GCNNGC 6 cut(s) 613, 727, 837, 1338, 1342, 1490
CaiI CAGNNNCTG 1 cut(s) 1304
CfoI GCGC 2 cut(s) 617, 1346
Cfr10I RCCGGY 1 cut(s) 1172
Cfr13I GGNCC 3 cut(s) 678, 893, 1301
CsiI ACCWGGT 1 cut(s) 33
Csp6I GTAC 1 cut(s) 1459
CviAII CATG 7 cut(s) 53, 618, 1065, 1088, 1247, 1262, 1489
CviQI GTAC 1 cut(s) 1459
DdeI CTNAG 3 cut(s) 199, 598, 1129
DriI GACNNNNNGTC 1 cut(s) 400
EaeI YGGCCR 2 cut(s) 1411, 1464
Eam1104I CTCTTC 1 cut(s) 378
Eam1105I GACNNNNNGTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 378
EciI GGCGGA 2 cut(s) 126, 209
Eco147I AGGCCT 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 518
Eco47I GGWCC 2 cut(s) 678, 1301
Eco47III AGCGCT 1 cut(s) 1345
Eco57I CTGAAG 3 cut(s) 158, 507, 929
Eco91I GGTNACC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 1301
EcoO65I GGTNACC 1 cut(s) 125
EcoRII CCWGG 4 cut(s) 33, 139, 550, 1303
EcoT22I ATGCAT 1 cut(s) 1490
Esp3I CGTCTC 2 cut(s) 387, 849
FaeI CATG 7 cut(s) 56, 621, 1068, 1091, 1250, 1265, 1492
FaqI GGGAC 2 cut(s) 986, 1402
FatI CATG 7 cut(s) 52, 617, 1064, 1087, 1246, 1261, 1488
FauI CCCGC 1 cut(s) 91
FauNDI CATATG 1 cut(s) 1496
FbaI TGATCA 2 cut(s) 879, 1201
FblI GTMKAC 1 cut(s) 1428
Fnu4HI GCNGC 2 cut(s) 324, 1590
FokI GGATG 6 cut(s) 242, 328, 785, 1043, 1268, 1388
Fsp4HI GCNGC 2 cut(s) 324, 1590
FspBI CTAG 7 cut(s) 131, 564, 584, 705, 812, 1337, 1385
FspI TGCGCA 1 cut(s) 616
GlaI GCGC 2 cut(s) 616, 1345
GluI GCNGC 2 cut(s) 324, 1590
GsuI CTGGAG 2 cut(s) 146, 209
HaeII RGCGCY 1 cut(s) 1347
HaeIII GGCC 5 cut(s) 171, 895, 1134, 1413, 1466
HapII CCGG 4 cut(s) 1173, 1285, 1424, 1536
HhaI GCGC 2 cut(s) 617, 1346
Hin1II CATG 7 cut(s) 56, 621, 1068, 1091, 1250, 1265, 1492
Hin6I GCGC 2 cut(s) 615, 1344
HinP1I GCGC 2 cut(s) 615, 1344
HpaII CCGG 4 cut(s) 1173, 1285, 1424, 1536
HphI GGTGA 4 cut(s) 566, 938, 1154, 1466
Hpy166II GTNNAC 2 cut(s) 146, 1429
Hpy188I TCNGA 9 cut(s) 89, 406, 601, 631, 884, 909, 1170, 1198, 1631
Hpy188III TCNNGA 6 cut(s) 163, 182, 392, 455, 584, 1028
Hpy8I GTNNAC 2 cut(s) 146, 1429
HpyAV CCTTC 9 cut(s) 182, 301, 403, 469, 581, 917, 1249, 1501, 1505
HpyCH4III ACNGT 3 cut(s) 118, 252, 1002
HpyCH4IV ACGT 2 cut(s) 155, 542
HpyF10VI GCNNNNNNNGC 2 cut(s) 1410, 1598
HpyF3I CTNAG 3 cut(s) 199, 598, 1129
HpySE526I ACGT 2 cut(s) 155, 542
Hsp92II CATG 7 cut(s) 56, 621, 1068, 1091, 1250, 1265, 1492
HspAI GCGC 2 cut(s) 615, 1344
Ksp22I TGATCA 2 cut(s) 879, 1201
LmnI GCTCC 3 cut(s) 418, 481, 1024
Lsp1109I GCAGC 2 cut(s) 310, 1576
LweI GCATC 3 cut(s) 205, 262, 653
MabI ACCWGGT 1 cut(s) 33
MaeI CTAG 7 cut(s) 131, 564, 584, 705, 812, 1337, 1385
MaeII ACGT 2 cut(s) 155, 542
MaeIII GTNAC 5 cut(s) 44, 125, 151, 775, 807
MboII GAAGA 4 cut(s) 31, 392, 395, 500
MfeI CAATTG 2 cut(s) 281, 963
MflI RGATCY 4 cut(s) 701, 1165, 1420, 1472
MhlI GDGCHC 2 cut(s) 116, 148
MlsI TGGCCA 2 cut(s) 1413, 1466
MluCI AATT 9 cut(s) 23, 281, 291, 558, 672, 963, 1007, 1116, 1328
MluI ACGCGT 2 cut(s) 727, 1360
MluNI TGGCCA 2 cut(s) 1413, 1466
MlyI GAGTC 4 cut(s) 344, 524, 631, 1300
MmeI TCCRAC 6 cut(s) 234, 384, 1046, 1081, 1193, 1544
Mox20I TGGCCA 2 cut(s) 1413, 1466
Mph1103I ATGCAT 1 cut(s) 1490
MroXI GAANNNNTTC 1 cut(s) 387
MscI TGGCCA 2 cut(s) 1413, 1466
MseI TTAA 6 cut(s) 734, 866, 1119, 1149, 1158, 1266
MslI CAYNNNNRTG 1 cut(s) 1140
Msp20I TGGCCA 2 cut(s) 1413, 1466
MspI CCGG 4 cut(s) 1173, 1285, 1424, 1536
MspR9I CCNGG 4 cut(s) 35, 141, 552, 1305
MunI CAATTG 2 cut(s) 281, 963
Mva1269I GAATGC 2 cut(s) 325, 708
MvaI CCWGG 4 cut(s) 35, 141, 552, 1305
MvnI CGCG 2 cut(s) 729, 1362
MwoI GCNNNNNNNGC 2 cut(s) 1410, 1598
NdeI CATATG 1 cut(s) 1496
NheI GCTAGC 1 cut(s) 1336
NlaIII CATG 7 cut(s) 56, 621, 1068, 1091, 1250, 1265, 1492
NlaIV GGNNCC 5 cut(s) 483, 823, 894, 1167, 1422
NmuCI GTSAC 1 cut(s) 775
NsbI TGCGCA 1 cut(s) 616
NsiI ATGCAT 1 cut(s) 1490
NspI RCATGY 4 cut(s) 1068, 1091, 1265, 1492
NspV TTCGAA 1 cut(s) 1554
PaeI GCATGC 1 cut(s) 1492
PceI AGGCCT 1 cut(s) 171
PciI ACATGT 2 cut(s) 1087, 1261
PctI GAATGC 2 cut(s) 325, 708
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 7 cut(s) 56, 90, 388, 451, 632, 659, 1355
PflMI CCANNNNNTGG 1 cut(s) 1287
PkrI GCNGC 2 cut(s) 325, 1591
PleI GAGTC 4 cut(s) 343, 523, 630, 1299
PpsI GAGTC 4 cut(s) 343, 523, 630, 1299
PpuMI RGGWCCY 1 cut(s) 1301
PscI ACATGT 2 cut(s) 1087, 1261
Psp1406I AACGTT 1 cut(s) 542
Psp5II RGGWCCY 1 cut(s) 1301
Psp6I CCWGG 4 cut(s) 33, 139, 550, 1303
PspEI GGTNACC 1 cut(s) 125
PspGI CCWGG 4 cut(s) 33, 139, 550, 1303
PspN4I GGNNCC 5 cut(s) 483, 823, 894, 1167, 1422
PspPI GGNCC 3 cut(s) 678, 893, 1301
PspPPI RGGWCCY 1 cut(s) 1301
PstNI CAGNNNCTG 1 cut(s) 1304
PsuI RGATCY 4 cut(s) 701, 1165, 1420, 1472
RsaI GTAC 1 cut(s) 1460
RsaNI GTAC 1 cut(s) 1459
RseI CAYNNNNRTG 1 cut(s) 1140
SaqAI TTAA 6 cut(s) 734, 866, 1119, 1149, 1158, 1266
SatI GCNGC 2 cut(s) 324, 1590
Sau96I GGNCC 3 cut(s) 678, 893, 1301
ScaI AGTACT 1 cut(s) 1460
SchI GAGTC 4 cut(s) 344, 524, 631, 1300
ScrFI CCNGG 4 cut(s) 35, 141, 552, 1305
SduI GDGCHC 2 cut(s) 116, 148
SexAI ACCWGGT 1 cut(s) 33
SfaNI GCATC 3 cut(s) 205, 262, 653
SfcI CTRYAG 2 cut(s) 1296, 1399
SfuI TTCGAA 1 cut(s) 1554
SinI GGWCC 2 cut(s) 678, 1301
SmiMI CAYNNNNRTG 1 cut(s) 1140
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SphI GCATGC 1 cut(s) 1492
Sse9I AATT 9 cut(s) 23, 281, 291, 558, 672, 963, 1007, 1116, 1328
SseBI AGGCCT 1 cut(s) 171
SsiI CCGC 4 cut(s) 98, 137, 194, 218
SspI AATATT 2 cut(s) 1241, 1551
SspMI CTAG 7 cut(s) 131, 564, 584, 705, 812, 1337, 1385
StuI AGGCCT 1 cut(s) 171
StyD4I CCNGG 4 cut(s) 33, 139, 550, 1303
TaaI ACNGT 3 cut(s) 118, 252, 1002
TaiI ACGT 2 cut(s) 158, 545
TaqI TCGA 6 cut(s) 93, 391, 449, 460, 670, 1554
TasI AATT 9 cut(s) 23, 281, 291, 558, 672, 963, 1007, 1116, 1328
TatI WGTACW 1 cut(s) 1458
TfiI GAWTC 7 cut(s) 56, 90, 388, 451, 632, 659, 1355
Tru1I TTAA 6 cut(s) 734, 866, 1119, 1149, 1158, 1266
Tru9I TTAA 6 cut(s) 734, 866, 1119, 1149, 1158, 1266
TscAI CASTG 2 cut(s) 694, 1474
TseFI GTSAC 1 cut(s) 775
TseI GCWGC 2 cut(s) 323, 1589
Tsp45I GTSAC 1 cut(s) 775
TspDTI ATGAA 5 cut(s) 69, 332, 732, 1001, 1241
TspGWI ACGGA 2 cut(s) 32, 873
TspRI CASTG 2 cut(s) 694, 1474
Van91I CCANNNNNTGG 1 cut(s) 1287
VneI GTGCAC 1 cut(s) 144
VpaK11BI GGWCC 2 cut(s) 678, 1301
XapI RAATTY 3 cut(s) 558, 672, 1007
XbaI TCTAGA 1 cut(s) 583
XceI RCATGY 4 cut(s) 1068, 1091, 1265, 1492
XcmI CCANNNNNNNNNTGG 1 cut(s) 1474
XmiI GTMKAC 1 cut(s) 1428
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 7 cut(s) 131, 564, 584, 705, 812, 1337, 1385
ZrmI AGTACT 1 cut(s) 1460
Zsp2I ATGCAT 1 cut(s) 1490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.