Rw6G041920

F-box-like WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0003410
Physical Location & Seq
Forward (+)
65556173 .. 65559821
3649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G041920.1

Sequence Viewer

Length: 1218 bp
ATGATCTCCATCAACTCCACCGAATTGAACTACCTGGTCTTCCGTTACCTCCATGAATCAGGCTTCACACATTCAGCTTATGCTTTCGGATTCGAGGCGGGGATCAACAAGAGCACGGTTGACGGTAACCTAGTTCCGCCTGGTGCACTTGTTACGTTTCTCCAGAAAGGCCTTCAGTTTCTTGAGCTGGAGGCGGACTTAGGCAATGGTAGTGATGCGGACATGGAGGATGACTTTTCGTTCCTGCAACCGTTGGATTTTATCACAAAAGATGCGTATCAATTGCAGAAAATTGTTAGGGAAAAGAAGGATAGGATGAATGCTGCTAACAATGAGTCCAAGCAAGAAAGCGAAAGGGAAGTAGAGGTGGAGCGAAAAGAAGAAGAAGAGATTCGAGACGATAAGTCGGAGAAGGATAGGGAGCAGGAGAAGTCGAATCAGGATCGAAGTGAGATGGAGAAGGTGGAGCCTGAAGAAAATGGAACTGGTGGAGGGGTGGAGCCAATGCAGACGTCCCCGAGCTCAACGTTCTTGCCTGGCGAAATTCCTAGTAGTGATGTCATAGTTCTAGAAGGGCATACCTCAGAGGTTTTTGCTTGCGCATGGAGTCCATCTAGTTCGCTTCTTGCATCTGGTTCTGGGGATTCAACAGCTCGAATTTGGACCATTGCCAGTGGAAGTTGTAGATCGAGCATTCAAAATGAACCTGCACGTGTGTTAAAGCATTTCAAAGGGAGAGCCAATGAGAAAAGCAAGGATGTGACTACACTTGATTGGAATGATGATGGAACGTTACTAGCAACAGGTTCCTATGATGGGCAAGCAAGAATATGGGGTAGAGACGGAGAGTTAATGACTACTTTGATCAGACATAAAGGGCCAATCTTTTCTCTGAAGTGGAACAAAGAAGGTGATTATCTTCTGAGTGGAAGTGTGGATAAAACTGCAATTGTGTGGGACATAAAGACTGGCGAATGGAAACAACAGTTTGAATTTCATTCAGCTCCAACTCTGGATGTTGATTGGCGAGACAATACTTCTTTTGCAACATGCTCTACTGATGGTACGATACATGTTTGCAAGGTTGGAGAGAACCAACCAATTAAAACTTTCTTAGGCCATCAGGGTGAAGTTAATGCTATTAAGTGGGATCCGACTGGCTCATTATTGGCTTCTTGCTCTGATGATCATACAGCAAAGGTAACGTATAATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000122 GO:0001067 GO:0002021 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006508 GO:0006511 GO:0006629 GO:0006807 GO:0006996 GO:0007275 GO:0008013 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0015630 GO:0016042 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0017053 GO:0019216 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0023051 GO:0023056 GO:0030111 GO:0030154 GO:0030163 GO:0030177 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031667 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0035264 GO:0035601 GO:0036211 GO:0040007 GO:0042393 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044212 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044464 GO:0045444 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0047485 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050872 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051603 GO:0060255 GO:0060612 GO:0060613 GO:0060828 GO:0061448 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090207 GO:0090263 GO:0097159 GO:0098732 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140110 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04310 map04013 map04310
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

405

Amino Acids

44.97

Weight (kDa)

4.75

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 8 - 32 1.2e-06 LisH
WD40_WDHD1_1st PF24817 184 - 233 3.8e-06 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 187 - 278 7.3e-16 WDR5 beta-propeller domain
WD40 PF00400 187 - 221 1.1e-09 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 187 - 239 1.8e-06 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 188 - 234 3.6e-06 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 189 - 239 8.8e-06 Prp19 WD40 domain
Beta-prop_EML PF23409 191 - 325 3.6e-11 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3 PF25174 193 - 400 2.7e-34 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 195 - 324 7.1e-11 Aladin seven-bladed propeller
Beta-prop_EML_2 PF23414 246 - 346 3.4e-09 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st PF25173 248 - 401 1.3e-25 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 248 - 371 1.3e-23 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 251 - 333 1.2e-11 WDHD1 first WD40 domain
EIF3I PF24805 251 - 354 2e-11 EIF3I
WD40 PF00400 251 - 278 2.1e-07 WD domain, G-beta repeat
WDR55 PF24796 253 - 398 8.8e-12 WDR55
Beta-prop_WDR19_1st PF23389 257 - 401 7.6e-09 WDR19 first beta-propeller
WD40 PF00400 282 - 320 1.2e-07 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 285 - 400 7.5e-10 WDR3 second beta-propeller domain
Beta-prop_TEP1_2nd PF25047 286 - 382 1.9e-09 TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 287 - 366 1.7e-09 CAF1B/HIR1 beta-propeller domain
WD40_CDC20-Fz PF24807 288 - 401 1.9e-17 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 291 - 401 5.9e-09 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 295 - 400 8.8e-16 Prp19 WD40 domain
WD40_Gbeta PF25391 305 - 401 1.5e-10 G protein beta WD-40 repeat protein
Beta-prop_EML_2 PF23414 309 - 401 2.5e-06 Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st PF24817 339 - 401 7.6e-08 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 344 - 401 8.2e-11 WDR5 beta-propeller domain
WD40 PF00400 366 - 401 4e-09 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1216
AatII GACGTC 1 cut(s) 515
Acc16I TGCGCA 1 cut(s) 601
Acc36I ACCTGC 1 cut(s) 715
AciI CCGC 4 cut(s) 98, 137, 194, 218
AclI AACGTT 2 cut(s) 527, 791
AclWI GGATC 4 cut(s) 110, 450, 1145, 1158
AcsI RAATTY 3 cut(s) 543, 657, 992
AcuI CTGAAG 3 cut(s) 158, 492, 914
AcvI CACGTG 1 cut(s) 713
AcyI GRCGYC 1 cut(s) 512
AfaI GTAC 1 cut(s) 1066
AfiI CCNNNNNNNGG 1 cut(s) 816
AflIII ACRYGT 2 cut(s) 712, 1072
AgsI TTSAA 5 cut(s) 28, 648, 698, 730, 992
AhdI GACNNNNNGTC 1 cut(s) 403
AjnI CCWGG 3 cut(s) 33, 139, 535
AluBI AGCT 5 cut(s) 77, 187, 522, 653, 1004
AluI AGCT 5 cut(s) 77, 187, 522, 653, 1004
Alw21I GWGCWC 3 cut(s) 116, 148, 524
Alw26I GTCTC 3 cut(s) 390, 834, 1023
Alw44I GTGCAC 1 cut(s) 144
AlwI GGATC 4 cut(s) 110, 450, 1145, 1158
Ama87I CYCGRG 1 cut(s) 517
AoxI GGCC 3 cut(s) 169, 878, 1117
ApaLI GTGCAC 1 cut(s) 144
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 3 cut(s) 543, 657, 992
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 1 cut(s) 602
AspS9I GGNCC 2 cut(s) 663, 878
AsuHPI GGTGA 2 cut(s) 923, 1139
AvaI CYCGRG 1 cut(s) 517
AvaII GGWCC 1 cut(s) 663
BaeGI GKGCMC 1 cut(s) 148
BamHI GGATCC 1 cut(s) 1150
BanII GRGCYC 1 cut(s) 524
BbrPI CACGTG 1 cut(s) 713
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 3 cut(s) 116, 148, 524
BbvI GCAGC 1 cut(s) 310
BccI CCATC 7 cut(s) 17, 448, 619, 779, 809, 1055, 1128
BciT130I CCWGG 3 cut(s) 35, 141, 537
BclI TGATCA 2 cut(s) 864, 1186
BcoDI GTCTC 3 cut(s) 390, 834, 1023
BfaI CTAG 5 cut(s) 131, 549, 569, 615, 797
BfuAI ACCTGC 1 cut(s) 715
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 3 cut(s) 35, 141, 537
Bme18I GGWCC 1 cut(s) 663
BmeRI GACNNNNNGTC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 517
BmgT120I GGNCC 2 cut(s) 663, 878
BmiI GGNNCC 4 cut(s) 468, 501, 808, 1152
BmrFI CCNGG 3 cut(s) 35, 141, 537
BmsI GCATC 3 cut(s) 205, 262, 638
BpiI GAAGAC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 146, 209
BpuEI CTTGAG 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 713
BsaBI GATNNNNATC 2 cut(s) 8, 276
BsaHI GRCGYC 1 cut(s) 512
Bsc4I CCNNNNNNNGG 1 cut(s) 816
Bse1I ACTGG 4 cut(s) 490, 672, 973, 1162
Bse3DI GCAATG 2 cut(s) 211, 666
Bse8I GATNNNNATC 2 cut(s) 8, 276
BseBI CCWGG 3 cut(s) 35, 141, 537
BseGI GGATG 4 cut(s) 235, 321, 763, 1021
BseJI GATNNNNATC 2 cut(s) 8, 276
BseLI CCNNNNNNNGG 1 cut(s) 816
BseMI GCAATG 2 cut(s) 211, 666
BseMII CTCAG 2 cut(s) 597, 914
BseNI ACTGG 4 cut(s) 490, 672, 973, 1162
BseSI GKGCMC 1 cut(s) 148
BseXI GCAGC 1 cut(s) 310
BsgI GTGCAG 1 cut(s) 693
BshFI GGCC 3 cut(s) 171, 880, 1119
BsiHKAI GWGCWC 3 cut(s) 116, 148, 524
BsiHKCI CYCGRG 1 cut(s) 517
BslFI GGGAC 2 cut(s) 499, 971
BslI CCNNNNNNNGG 1 cut(s) 816
BsmAI GTCTC 3 cut(s) 390, 834, 1023
BsmBI CGTCTC 2 cut(s) 390, 834
BsmFI GGGAC 2 cut(s) 499, 971
BsmI GAATGC 2 cut(s) 325, 693
BsnI GGCC 3 cut(s) 171, 880, 1119
BsoBI CYCGRG 1 cut(s) 517
Bsp1286I GDGCHC 3 cut(s) 116, 148, 524
Bsp143I GATC 7 cut(s) 3, 102, 442, 686, 864, 1150, 1186
BspACI CCGC 4 cut(s) 98, 137, 194, 218
BspANI GGCC 3 cut(s) 171, 880, 1119
BspCNI CTCAG 2 cut(s) 596, 915
BspLI GGNNCC 4 cut(s) 468, 501, 808, 1152
BspMI ACCTGC 1 cut(s) 715
BspPI GGATC 4 cut(s) 110, 450, 1145, 1158
BsrDI GCAATG 2 cut(s) 211, 666
BsrI ACTGG 4 cut(s) 490, 672, 973, 1162
BssMI GATC 7 cut(s) 3, 102, 442, 686, 864, 1150, 1186
BssNI GRCGYC 1 cut(s) 512
Bst2UI CCWGG 3 cut(s) 35, 141, 537
Bst4CI ACNGT 4 cut(s) 118, 125, 252, 987
Bst6I CTCTTC 1 cut(s) 381
BstACI GRCGYC 1 cut(s) 512
BstBAI YACGTR 1 cut(s) 713
BstC8I GCNNGC 2 cut(s) 598, 822
BstDEI CTNAG 4 cut(s) 199, 583, 923, 1114
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 4 cut(s) 235, 321, 763, 1021
BstHHI GCGC 1 cut(s) 602
BstKTI GATC 7 cut(s) 6, 105, 445, 689, 867, 1153, 1189
BstMAI GTCTC 3 cut(s) 390, 834, 1023
BstMBI GATC 7 cut(s) 3, 102, 442, 686, 864, 1150, 1186
BstNI CCWGG 3 cut(s) 35, 141, 537
BstNSI RCATGY 2 cut(s) 1053, 1076
BstPI GGTNACC 1 cut(s) 125
BstSCI CCNGG 3 cut(s) 33, 139, 535
BstSLI GKGCMC 1 cut(s) 148
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 1150
BstYI RGATCY 1 cut(s) 1150
BsuRI GGCC 3 cut(s) 171, 880, 1119
BtsCI GGATG 4 cut(s) 235, 321, 763, 1021
BtsIMutI CAGTG 1 cut(s) 679
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 2 cut(s) 598, 822
CfoI GCGC 1 cut(s) 602
Cfr13I GGNCC 2 cut(s) 663, 878
CsiI ACCWGGT 1 cut(s) 33
Csp6I GTAC 1 cut(s) 1065
CviAII CATG 5 cut(s) 53, 223, 603, 1050, 1073
CviQI GTAC 1 cut(s) 1065
DdeI CTNAG 4 cut(s) 199, 583, 923, 1114
DpnI GATC 7 cut(s) 5, 104, 444, 688, 866, 1152, 1188
DpnII GATC 7 cut(s) 3, 102, 442, 686, 864, 1150, 1186
DriI GACNNNNNGTC 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 381
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 381
EciI GGCGGA 2 cut(s) 126, 209
Ecl136II GAGCTC 1 cut(s) 522
Eco147I AGGCCT 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 663
Eco53kI GAGCTC 1 cut(s) 522
Eco57I CTGAAG 3 cut(s) 158, 492, 914
Eco72I CACGTG 1 cut(s) 713
Eco88I CYCGRG 1 cut(s) 517
Eco91I GGTNACC 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 522
EcoO65I GGTNACC 1 cut(s) 125
EcoRII CCWGG 3 cut(s) 33, 139, 535
EcoT38I GRGCYC 1 cut(s) 524
Esp3I CGTCTC 2 cut(s) 390, 834
FaeI CATG 5 cut(s) 56, 226, 606, 1053, 1076
FaqI GGGAC 2 cut(s) 499, 971
FatI CATG 5 cut(s) 52, 222, 602, 1049, 1072
FauI CCCGC 1 cut(s) 91
FbaI TGATCA 2 cut(s) 864, 1186
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 4 cut(s) 242, 328, 770, 1028
FriOI GRGCYC 1 cut(s) 524
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 5 cut(s) 131, 549, 569, 615, 797
FspI TGCGCA 1 cut(s) 601
GlaI GCGC 1 cut(s) 601
GluI GCNGC 1 cut(s) 324
GsuI CTGGAG 2 cut(s) 146, 209
HaeIII GGCC 3 cut(s) 171, 880, 1119
HhaI GCGC 1 cut(s) 602
Hin1I GRCGYC 1 cut(s) 512
Hin1II CATG 5 cut(s) 56, 226, 606, 1053, 1076
Hin6I GCGC 1 cut(s) 600
HinP1I GCGC 1 cut(s) 600
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 7 cut(s) 56, 90, 335, 391, 436, 607, 644
HphI GGTGA 2 cut(s) 923, 1139
Hpy166II GTNNAC 2 cut(s) 121, 146
Hpy188I TCNGA 8 cut(s) 89, 409, 586, 869, 894, 924, 1155, 1183
Hpy188III TCNNGA 6 cut(s) 163, 182, 395, 440, 569, 1013
Hpy8I GTNNAC 2 cut(s) 121, 146
HpyAV CCTTC 6 cut(s) 182, 301, 406, 454, 566, 902
HpyCH4III ACNGT 4 cut(s) 118, 125, 252, 987
HpyCH4IV ACGT 6 cut(s) 155, 512, 527, 712, 791, 1205
HpyCH4V TGCA 9 cut(s) 146, 247, 286, 508, 629, 710, 947, 1046, 1080
HpyF3I CTNAG 4 cut(s) 199, 583, 923, 1114
HpySE526I ACGT 6 cut(s) 155, 512, 527, 712, 791, 1205
Hsp92I GRCGYC 1 cut(s) 512
Hsp92II CATG 5 cut(s) 56, 226, 606, 1053, 1076
HspAI GCGC 1 cut(s) 600
Ksp22I TGATCA 2 cut(s) 864, 1186
Kzo9I GATC 7 cut(s) 3, 102, 442, 686, 864, 1150, 1186
LmnI GCTCC 5 cut(s) 370, 421, 466, 499, 1009
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 3 cut(s) 205, 262, 638
MabI ACCWGGT 1 cut(s) 33
MaeI CTAG 5 cut(s) 131, 549, 569, 615, 797
MaeII ACGT 6 cut(s) 155, 512, 527, 712, 791, 1205
MaeIII GTNAC 6 cut(s) 44, 125, 151, 760, 792, 1201
MalI GATC 7 cut(s) 5, 104, 444, 688, 866, 1152, 1188
MboI GATC 7 cut(s) 3, 102, 442, 686, 864, 1150, 1186
MboII GAAGA 6 cut(s) 31, 392, 395, 398, 485, 911
MfeI CAATTG 2 cut(s) 281, 948
MflI RGATCY 1 cut(s) 1150
MhlI GDGCHC 3 cut(s) 116, 148, 524
MluCI AATT 9 cut(s) 23, 281, 291, 543, 657, 948, 992, 1101, 1210
MlyI GAGTC 2 cut(s) 344, 616
MmeI TCCRAC 5 cut(s) 234, 387, 1031, 1066, 1178
MnlI CCTC 8 cut(s) 59, 88, 184, 220, 358, 485, 580, 592
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 5 cut(s) 719, 851, 1104, 1134, 1143
MslI CAYNNNNRTG 1 cut(s) 1125
MspR9I CCNGG 3 cut(s) 35, 141, 537
MunI CAATTG 2 cut(s) 281, 948
Mva1269I GAATGC 2 cut(s) 325, 693
MvaI CCWGG 3 cut(s) 35, 141, 537
NdeII GATC 7 cut(s) 3, 102, 442, 686, 864, 1150, 1186
NlaIII CATG 5 cut(s) 56, 226, 606, 1053, 1076
NlaIV GGNNCC 4 cut(s) 468, 501, 808, 1152
NmuCI GTSAC 1 cut(s) 760
NsbI TGCGCA 1 cut(s) 601
NspI RCATGY 2 cut(s) 1053, 1076
PceI AGGCCT 1 cut(s) 171
PciI ACATGT 1 cut(s) 1072
PctI GAATGC 2 cut(s) 325, 693
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 5 cut(s) 56, 90, 391, 436, 644
PkrI GCNGC 1 cut(s) 325
PleI GAGTC 2 cut(s) 343, 615
PmaCI CACGTG 1 cut(s) 713
PmlI CACGTG 1 cut(s) 713
PpsI GAGTC 2 cut(s) 343, 615
Ppu21I YACGTR 1 cut(s) 713
PscI ACATGT 1 cut(s) 1072
PsiI TTATAA 1 cut(s) 1216
Psp124BI GAGCTC 1 cut(s) 524
Psp1406I AACGTT 2 cut(s) 527, 791
Psp6I CCWGG 3 cut(s) 33, 139, 535
PspCI CACGTG 1 cut(s) 713
PspEI GGTNACC 1 cut(s) 125
PspGI CCWGG 3 cut(s) 33, 139, 535
PspN4I GGNNCC 4 cut(s) 468, 501, 808, 1152
PspPI GGNCC 2 cut(s) 663, 878
PsuI RGATCY 1 cut(s) 1150
RsaI GTAC 1 cut(s) 1066
RsaNI GTAC 1 cut(s) 1065
RseI CAYNNNNRTG 1 cut(s) 1125
SacI GAGCTC 1 cut(s) 524
SaqAI TTAA 5 cut(s) 719, 851, 1104, 1134, 1143
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 7 cut(s) 3, 102, 442, 686, 864, 1150, 1186
Sau96I GGNCC 2 cut(s) 663, 878
SchI GAGTC 2 cut(s) 344, 616
ScrFI CCNGG 3 cut(s) 35, 141, 537
SduI GDGCHC 3 cut(s) 116, 148, 524
SexAI ACCWGGT 1 cut(s) 33
SfaNI GCATC 3 cut(s) 205, 262, 638
SinI GGWCC 1 cut(s) 663
SmiMI CAYNNNNRTG 1 cut(s) 1125
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 9 cut(s) 23, 281, 291, 543, 657, 948, 992, 1101, 1210
SseBI AGGCCT 1 cut(s) 171
SsiI CCGC 4 cut(s) 98, 137, 194, 218
SspMI CTAG 5 cut(s) 131, 549, 569, 615, 797
SstI GAGCTC 1 cut(s) 524
StuI AGGCCT 1 cut(s) 171
StyD4I CCNGG 3 cut(s) 33, 139, 535
TaaI ACNGT 4 cut(s) 118, 125, 252, 987
TaiI ACGT 6 cut(s) 158, 515, 530, 715, 794, 1208
TaqI TCGA 6 cut(s) 93, 394, 434, 445, 655, 689
TasI AATT 9 cut(s) 23, 281, 291, 543, 657, 948, 992, 1101, 1210
TfiI GAWTC 5 cut(s) 56, 90, 391, 436, 644
Tru1I TTAA 5 cut(s) 719, 851, 1104, 1134, 1143
Tru9I TTAA 5 cut(s) 719, 851, 1104, 1134, 1143
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 4 cut(s) 69, 332, 717, 986
TspGWI ACGGA 2 cut(s) 32, 858
TspRI CASTG 1 cut(s) 679
VneI GTGCAC 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 663
XapI RAATTY 3 cut(s) 543, 657, 992
XbaI TCTAGA 1 cut(s) 568
XceI RCATGY 2 cut(s) 1053, 1076
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 5 cut(s) 131, 549, 569, 615, 797
ZraI GACGTC 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.