Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016600

Physical Location & Seq

Genomic Coordinates Reverse (-)

18205308 .. 18207351

Gene Structure 2044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG197900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGAGCTCCACCACCCCTTTGGTCACCACCACCGCTGCGACCCACCACCCACCATCAATTGAAAGAGTCACATTCCTGATCGACAAGCCAAACTCCATCCACCACCTCCTCCAAACCCACGCGCTTCTCCTCCGCCACAACCTCCACCACCACCCAATCCTCAACTTCAAGCTCCAACGCTCCTACGCCTCCTTGGGCCGCCTCGACTACTCCGTCGCCCTCTTCCGCCGCACCCAAAACCCCACCGTCTTCTTCTGGAGCTCCATCATCAACAGCCACTCCAAACGCGGCCTTCACGACCTTGCTCTCGTGTTCTACACCCAAATGCTCACAAATGGAGTCCAACCCAATTGCTTCACATTCTCCGCATTGATGAAGTCGTGCTCAATTGATGCCGGAAGAGTCCTTCATTGCCAGACTATCAAGTTGGGGTTTGATTCCGATCTGTATGTCAGGACCGGCCTTGTGGATGTTTATGCCAGAGCCGGGGATGTTGTGGGTGCAAGACAGCTGTTCGATACAATGCCGGAGAGAAGCTTGGTTTCTTTCACGGCCATGATTACTTGCTATGCGAAGCGGGGAGAGGTGGATGAGGCCCGTGTGTTGTTTGATGGAATGAAAGAGAGAGATGTGGTGTGCTGGAATGTGATGATTGACGGGTATGCGCAGCATGGGATGCCGAATGAGGCTTTGTTGCTGTTTCGGAAAATGCTGGCGGCCAAAGTTAAGCCGGATGGAGTGACTGTGCTGTCTTTGCTCTCTGCGTGCGGGCAGATTGGAGCTCTTGAGTCTGGTAGATGGCTTCATTCGTACATTGAGAATAATGGGATTCGGATTGATGTACAGGTTGGTTCTGCTTTGATTGATATGTATAGTAAGTGTGGTAGTTGGGAGGATGCAAGGCTCGTTTTCGATGGGATTGGCGGGAAGGATGTTGTTGTTTGGAATTCCATGATTGTTGGGTATGCAATGCATGGGTTTAGCCGAGAGGCATTGGAGTTGTTCAGTGAGATGTGTAGAATTGGGTACCGGCCTACGGATATAACGTTCATTGGTGTTTTGAATGCTTGTGCTTATGCTGGTTTGGTCAGCGAGGGACAAGCCTTCTTCAGTTCAATGAAGGATGAATATGGGATCGAACCAAAGATTGAGCATTATGGGTGCATGGGAAGTAATCTCCAGTTCCTCAACTCAGTTGGGAAAGTGAACGTTTTGATTCAAAGTGACTCAACCCAATCAAAAAACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

416

Amino Acids

46.31

Weight (kDa)

7.64

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	81 - 128	5e-10	PPR repeat family
PPR	PF01535	181 - 211	1.9e-07	PPR repeat
PPR_2	PF13041	209 - 256	7.4e-12	PPR repeat family
PPR_1	PF12854	209 - 237	6e-06	PPR repeat
PPR	PF01535	212 - 239	1.1e-08	PPR repeat
PPR_2	PF13041	310 - 358	4.9e-10	PPR repeat family
PPR	PF01535	313 - 342	3.7e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37380
fragaria_vesca	FvH4_1g16950
malus_domestica	MD15G1290500.v1.1
prunus_persica	Prupe.6G226400_v2.0.a1
pyrus_communis	pycom15g25420
rosa_chinensis	RchiOBHm_Chr2g0107031
rosa_laevigata	RLG00000017551
rosa_multiflora	Rmu_sc0007106.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136670
rosa_rugosa	Rorug02G0140000
rosa_samantha	Rh2BG202400 Rh2CG195600 Rh2DG197900
rosa_wichuraiana	Rw2G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	212, 748
Acc16I	TGCGCA	1 cut(s)	666
Acc65I	GGTACC	1 cut(s)	1026
AccB1I	GGYRCC	1 cut(s)	1026
AccII	CGCG	2 cut(s)	122, 288
AclI	AACGTT	2 cut(s)	1046, 1209
AclWI	GGATC	1 cut(s)	1142
AcoI	YGGCCR	2 cut(s)	552, 717
AcsI	RAATTY	1 cut(s)	946
AcuI	CTGAAG	1 cut(s)	1093
AfaI	GTAC	3 cut(s)	812, 843, 1028
AfiI	CCNNNNNNNGG	2 cut(s)	486, 1036
AgsI	TTSAA	5 cut(s)	62, 169, 1063, 1116, 1220
AloI	GAACNNNNNNTCC	2 cut(s)	1031, 1063
AluBI	AGCT	6 cut(s)	6, 172, 261, 511, 537, 782
AluI	AGCT	6 cut(s)	6, 172, 261, 511, 537, 782
Alw21I	GWGCWC	4 cut(s)	8, 263, 386, 784
AlwI	GGATC	1 cut(s)	1142
AoxI	GGCC	7 cut(s)	196, 289, 460, 552, 594, 717, 1031
ApeKI	GCWGC	2 cut(s)	35, 667
ApoI	RAATTY	1 cut(s)	946
Asp718I	GGTACC	1 cut(s)	1026
AspLEI	GCGC	2 cut(s)	124, 667
AspS9I	GGNCC	3 cut(s)	196, 456, 595
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	1026
BanII	GRGCYC	3 cut(s)	8, 263, 784
BauI	CACGAG	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	4 cut(s)	8, 263, 386, 784
BbvI	GCAGC	2 cut(s)	22, 679
BccI	CCATC	7 cut(s)	61, 104, 272, 605, 728, 792, 908
BceAI	ACGGC	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	487
BisI	GCNGC	6 cut(s)	36, 199, 229, 289, 668, 717
BlsI	GCNGC	6 cut(s)	37, 200, 230, 290, 669, 718
Bme1390I	CCNGG	1 cut(s)	487
Bme18I	GGWCC	1 cut(s)	456
BmgT120I	GGNCC	3 cut(s)	196, 456, 595
BmiI	GGNNCC	1 cut(s)	1028
BmrFI	CCNGG	1 cut(s)	487
BmsI	GCATC	3 cut(s)	382, 666, 886
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	2 cut(s)	277, 1163
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	487
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	192, 486
BsaXI	ACNNNNNCTCC	4 cut(s)	263, 293, 729, 759
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 1036
Bse118I	RCCGGY	2 cut(s)	458, 1029
Bse1I	ACTGG	1 cut(s)	1180
Bse3DI	GCAATG	2 cut(s)	409, 975
Bse8I	GATNNNNATC	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	192, 486
BseGI	GGATG	9 cut(s)	96, 475, 496, 595, 681, 739, 901, 937, 1129
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	2 cut(s)	486, 1036
BseMI	GCAATG	2 cut(s)	409, 975
BseMII	CTCAG	1 cut(s)	1206
BseNI	ACTGG	1 cut(s)	1180
BseRI	GAGGAG	2 cut(s)	98, 119
BseXI	GCAGC	2 cut(s)	22, 679
Bsh1236I	CGCG	2 cut(s)	122, 288
BshFI	GGCC	7 cut(s)	198, 291, 462, 554, 596, 719, 1033
BshNI	GGYRCC	1 cut(s)	1026
BsiHKAI	GWGCWC	4 cut(s)	8, 263, 386, 784
BsiSI	CCGG	6 cut(s)	396, 459, 486, 527, 731, 1030
BslFI	GGGAC	1 cut(s)	1110
BslI	CCNNNNNNNGG	2 cut(s)	486, 1036
BsmFI	GGGAC	1 cut(s)	1110
BsmI	GAATGC	1 cut(s)	1069
BsnI	GGCC	7 cut(s)	198, 291, 462, 554, 596, 719, 1033
Bsp1286I	GDGCHC	4 cut(s)	8, 263, 386, 784
Bsp1407I	TGTACA	1 cut(s)	841
Bsp143I	GATC	3 cut(s)	78, 442, 1134
BspANI	GGCC	7 cut(s)	198, 291, 462, 554, 596, 719, 1033
BspCNI	CTCAG	1 cut(s)	1205
BspFNI	CGCG	2 cut(s)	122, 288
BspLI	GGNNCC	1 cut(s)	1028
BspPI	GGATC	1 cut(s)	1142
BspT107I	GGYRCC	1 cut(s)	1026
BsrDI	GCAATG	2 cut(s)	409, 975
BsrFI	RCCGGY	2 cut(s)	458, 1029
BsrGI	TGTACA	1 cut(s)	841
BsrI	ACTGG	1 cut(s)	1180
BssAI	RCCGGY	2 cut(s)	458, 1029
BssECI	CCNNGG	2 cut(s)	192, 486
BssMI	GATC	3 cut(s)	78, 442, 1134
BssSI	CACGAG	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	192
Bst2BI	CACGAG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	247, 745
Bst6I	CTCTTC	2 cut(s)	227, 394
BstAPI	GCANNNNNTGC	1 cut(s)	676
BstAUI	TGTACA	1 cut(s)	841
BstC8I	GCNNGC	3 cut(s)	714, 766, 770
BstDEI	CTNAG	1 cut(s)	1192
BstEII	GGTNACC	1 cut(s)	22
BstF5I	GGATG	9 cut(s)	96, 475, 496, 595, 681, 739, 901, 937, 1129
BstFNI	CGCG	2 cut(s)	122, 288
BstHHI	GCGC	2 cut(s)	124, 667
BstKTI	GATC	3 cut(s)	81, 445, 1137
BstMBI	GATC	3 cut(s)	78, 442, 1134
BstMWI	GCNNNNNNNGC	2 cut(s)	676, 754
BstPI	GGTNACC	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	485
BstUI	CGCG	2 cut(s)	122, 288
BstV1I	GCAGC	2 cut(s)	22, 679
BstV2I	GAAGAC	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	19
BsuRI	GGCC	7 cut(s)	198, 291, 462, 554, 596, 719, 1033
BtsCI	GGATG	9 cut(s)	96, 475, 496, 595, 681, 739, 901, 937, 1129
BtsIMutI	CAGTG	1 cut(s)	1012
Cac8I	GCNNGC	3 cut(s)	714, 766, 770
CfoI	GCGC	2 cut(s)	124, 667
Cfr10I	RCCGGY	2 cut(s)	458, 1029
Cfr13I	GGNCC	3 cut(s)	196, 456, 595
Csp6I	GTAC	3 cut(s)	811, 842, 1027
CviAII	CATG	5 cut(s)	556, 671, 952, 974, 1165
CviQI	GTAC	3 cut(s)	811, 842, 1027
DdeI	CTNAG	1 cut(s)	1192
DpnI	GATC	3 cut(s)	80, 444, 1136
DpnII	GATC	3 cut(s)	78, 442, 1134
DrdI	GACNNNNNNGTC	2 cut(s)	212, 748
DseDI	GACNNNNNNGTC	2 cut(s)	212, 748
EaeI	YGGCCR	2 cut(s)	552, 717
Eam1104I	CTCTTC	2 cut(s)	227, 394
EarI	CTCTTC	2 cut(s)	227, 394
EciI	GGCGGA	2 cut(s)	122, 215
Ecl136II	GAGCTC	3 cut(s)	6, 261, 782
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	3 cut(s)	8, 263, 784
Eco47I	GGWCC	1 cut(s)	456
Eco53kI	GAGCTC	3 cut(s)	6, 261, 782
Eco57I	CTGAAG	1 cut(s)	1093
Eco91I	GGTNACC	1 cut(s)	22
EcoICRI	GAGCTC	3 cut(s)	6, 261, 782
EcoO65I	GGTNACC	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	946
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	975
EcoT38I	GRGCYC	3 cut(s)	8, 263, 784
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	5 cut(s)	559, 674, 955, 977, 1168
FaqI	GGGAC	1 cut(s)	1110
FatI	CATG	5 cut(s)	555, 670, 951, 973, 1164
FauI	CCCGC	3 cut(s)	570, 761, 917
Fnu4HI	GCNGC	6 cut(s)	36, 199, 229, 289, 668, 717
FokI	GGATG	9 cut(s)	83, 482, 503, 602, 688, 746, 908, 944, 1136
FriOI	GRGCYC	3 cut(s)	8, 263, 784
Fsp4HI	GCNGC	6 cut(s)	36, 199, 229, 289, 668, 717
FspI	TGCGCA	1 cut(s)	666
GlaI	GCGC	2 cut(s)	123, 666
GluI	GCNGC	6 cut(s)	36, 199, 229, 289, 668, 717
GsuI	CTGGAG	2 cut(s)	277, 1163
HaeIII	GGCC	7 cut(s)	198, 291, 462, 554, 596, 719, 1033
HapII	CCGG	6 cut(s)	396, 459, 486, 527, 731, 1030
HhaI	GCGC	2 cut(s)	124, 667
Hin1II	CATG	5 cut(s)	559, 674, 955, 977, 1168
Hin6I	GCGC	2 cut(s)	122, 665
HinP1I	GCGC	2 cut(s)	122, 665
HindIII	AAGCTT	1 cut(s)	535
HinfI	GANTC	8 cut(s)	66, 339, 402, 437, 788, 829, 1216, 1226
HpaII	CCGG	6 cut(s)	396, 459, 486, 527, 731, 1030
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	1207
Hpy188I	TCNGA	3 cut(s)	442, 705, 834
Hpy188III	TCNNGA	5 cut(s)	76, 256, 296, 454, 785
Hpy8I	GTNNAC	1 cut(s)	1207
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	5 cut(s)	302, 416, 922, 1114, 1114
HpyCH4III	ACNGT	2 cut(s)	247, 745
HpyCH4IV	ACGT	2 cut(s)	1046, 1209
HpyCH4V	TGCA	5 cut(s)	503, 899, 968, 973, 1164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	676, 754
HpyF3I	CTNAG	1 cut(s)	1192
HpySE526I	ACGT	2 cut(s)	1046, 1209
Hsp92II	CATG	5 cut(s)	559, 674, 955, 977, 1168
HspAI	GCGC	2 cut(s)	122, 665
KpnI	GGTACC	1 cut(s)	1030
Kzo9I	GATC	3 cut(s)	78, 442, 1134
LmnI	GCTCC	6 cut(s)	11, 177, 185, 258, 266, 779
Lsp1109I	GCAGC	2 cut(s)	22, 679
LweI	GCATC	3 cut(s)	382, 666, 886
MaeII	ACGT	2 cut(s)	1046, 1209
MaeIII	GTNAC	4 cut(s)	22, 67, 739, 1223
MalI	GATC	3 cut(s)	80, 444, 1136
MboI	GATC	3 cut(s)	78, 442, 1134
MboII	GAAGA	5 cut(s)	214, 241, 244, 411, 1099
MfeI	CAATTG	3 cut(s)	57, 349, 387
MhlI	GDGCHC	4 cut(s)	8, 263, 386, 784
MluCI	AATT	5 cut(s)	57, 349, 387, 946, 1020
MlyI	GAGTC	5 cut(s)	75, 348, 411, 797, 1220
MmeI	TCCRAC	2 cut(s)	199, 367
Mph1103I	ATGCAT	1 cut(s)	975
MseI	TTAA	1 cut(s)	726
MslI	CAYNNNNRTG	2 cut(s)	323, 554
MspA1I	CMGCKG	2 cut(s)	35, 511
MspI	CCGG	6 cut(s)	396, 459, 486, 527, 731, 1030
MspR9I	CCNGG	1 cut(s)	487
MunI	CAATTG	3 cut(s)	57, 349, 387
Mva1269I	GAATGC	1 cut(s)	1069
MvnI	CGCG	2 cut(s)	122, 288
MwoI	GCNNNNNNNGC	2 cut(s)	676, 754
NciI	CCSGG	1 cut(s)	487
NdeII	GATC	3 cut(s)	78, 442, 1134
NlaIII	CATG	5 cut(s)	559, 674, 955, 977, 1168
NlaIV	GGNNCC	1 cut(s)	1028
NmeAIII	GCCGAG	1 cut(s)	1010
NmuCI	GTSAC	4 cut(s)	22, 67, 739, 1223
NsbI	TGCGCA	1 cut(s)	666
NsiI	ATGCAT	1 cut(s)	975
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 1043
PctI	GAATGC	1 cut(s)	1069
PfeI	GAWTC	3 cut(s)	437, 829, 1216
PkrI	GCNGC	6 cut(s)	37, 200, 230, 290, 669, 718
PleI	GAGTC	5 cut(s)	74, 347, 410, 796, 1220
PpsI	GAGTC	5 cut(s)	74, 347, 410, 796, 1220
Psp124BI	GAGCTC	3 cut(s)	8, 263, 784
Psp1406I	AACGTT	2 cut(s)	1046, 1209
PspEI	GGTNACC	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	1028
PspPI	GGNCC	3 cut(s)	196, 456, 595
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	3 cut(s)	812, 843, 1028
RsaNI	GTAC	3 cut(s)	811, 842, 1027
RseI	CAYNNNNRTG	2 cut(s)	323, 554
SacI	GAGCTC	3 cut(s)	8, 263, 784
SaqAI	TTAA	1 cut(s)	726
SatI	GCNGC	6 cut(s)	36, 199, 229, 289, 668, 717
Sau3AI	GATC	3 cut(s)	78, 442, 1134
Sau96I	GGNCC	3 cut(s)	196, 456, 595
SchI	GAGTC	5 cut(s)	75, 348, 411, 797, 1220
ScrFI	CCNGG	1 cut(s)	487
SduI	GDGCHC	4 cut(s)	8, 263, 386, 784
SfaNI	GCATC	3 cut(s)	382, 666, 886
SinI	GGWCC	1 cut(s)	456
SmiMI	CAYNNNNRTG	2 cut(s)	323, 554
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
Sse9I	AATT	5 cut(s)	57, 349, 387, 946, 1020
SstI	GAGCTC	3 cut(s)	8, 263, 784
StyD4I	CCNGG	1 cut(s)	485
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	2 cut(s)	247, 745
TaiI	ACGT	2 cut(s)	1049, 1212
TaqI	TCGA	5 cut(s)	81, 204, 516, 912, 1137
TasI	AATT	5 cut(s)	57, 349, 387, 946, 1020
TatI	WGTACW	1 cut(s)	841
TauI	GCSGC	4 cut(s)	201, 231, 291, 719
TfiI	GAWTC	3 cut(s)	437, 829, 1216
Tru1I	TTAA	1 cut(s)	726
Tru9I	TTAA	1 cut(s)	726
TscAI	CASTG	1 cut(s)	1012
TseFI	GTSAC	4 cut(s)	22, 67, 739, 1223
TseI	GCWGC	2 cut(s)	35, 667
Tsp45I	GTSAC	4 cut(s)	22, 67, 739, 1223
TspDTI	ATGAA	7 cut(s)	389, 398, 632, 794, 1039, 1133, 1140
TspGWI	ACGGA	2 cut(s)	202, 1052
TspRI	CASTG	1 cut(s)	1012
VpaK11BI	GGWCC	1 cut(s)	456
XapI	RAATTY	1 cut(s)	946
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
Zsp2I	ATGCAT	1 cut(s)	975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.