Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016600

Physical Location & Seq

Genomic Coordinates Reverse (-)

18699851 .. 18702105

Gene Structure 2255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG202400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAGCTCCACCACCCCTTTGGTCACCACCACCGCTCCGACCCACCACCCACCATCAATTGAAAGAGTCACATTCCTGATCGACAAGCCAAACTCCATCCACCACCTCCTCCAAACCCACGCGCTTCTCCTCCGCCACAACCTCCACCACCACCCAATCCTCAACTTCAAGCTCCAACGCTCCTACGCCTCCTTGGGCCTCCTCGACTACTCCGTCGCCCTCTTCCGGCGCACCGAAAACCCCACCGTCTTCTTCTGGAGCTCCATCATCAACAGCCACTCCAAACGCGGCCTTCACGACCTTGCTCTCATGTTGTACACCCAAATGCTCACAAATGGAGTCCAACCCAATTGCTTCACATTCTCCGCATTGATGAAGTCATGCTCAATTGATGCCGGAAGATTCCTTCATTGCCAGACTATCAAGTTGGGGTTTGATTCCGATCTGTATGTCAGGACCGGCCTTGTGGATGTTTACGCCAGAGCCGGGGATGTTGTGGGTGCAAGACAGCTGTTCGATACAATGCCGGAGAGAAGCTTGGTTTCTTTAACGGCCATGATTACTTGCTATGCGAAGCGGGGAGAGGTGGATGAGGCCCGTGTGTTGTTTGATGGAATGAAAGAGAGAGATGTGGTGTGCTGGAATGTGATGATTGACGGGTACGCGCAGCATGGGATGCCGAATGAGGCTTTGTTGCTGTTTCGGAAAATGCTGGCGGCCAAAGTTAAGCCGGATGGAGTGACTGTGCTGTCTTTGCTCTCTGCGTGCGGGCAGATTGGAGCTCTTGAGTCTGGTAGATGGCTTCATTCGTACATTGAGAATAATGGGATTCGGATTGATGTACAGGTTGGTTCTGCTTTGATTGATATGTATAGTAAGTGTGGTAGTTGGGAGGATGCAAGGCTCGTTTTCTATGGGATTGGCGGGAAGGATGTTGTTGTTTGGAATTCCATGATTGTTGGGTATGCAATGCATGGGTTTAGCCGAGAGGCATTGGAGTTGTTCAGTGAGATGTGTAGAATTGGGTACCGGCCTACGGATATAACGTTCATTGGTGTTTTGAATGCTTGTGCTTATGCTGGTTTGGTCAGCGAGGGACAAGCCTTCTTCAGTTCAATGAAGGATGAATATGGGATCGAACCAAAGATTGAGCATTATGGGTGCATGATTAGTGAACAGTTCCTCAATCTGATCTATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

400

Amino Acids

44.74

Weight (kDa)

6.59

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	81 - 128	6e-11	PPR repeat family
PPR	PF01535	181 - 211	1.5e-06	PPR repeat
PPR_2	PF13041	209 - 256	7e-12	PPR repeat family
PPR_1	PF12854	209 - 237	5.7e-06	PPR repeat
PPR	PF01535	212 - 239	1e-08	PPR repeat
PPR_2	PF13041	310 - 358	4.6e-10	PPR repeat family
PPR	PF01535	313 - 342	3.6e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37380
fragaria_vesca	FvH4_1g16950
malus_domestica	MD15G1290500.v1.1
prunus_persica	Prupe.6G226400_v2.0.a1
pyrus_communis	pycom15g25420
rosa_chinensis	RchiOBHm_Chr2g0107031
rosa_laevigata	RLG00000017551
rosa_multiflora	Rmu_sc0007106.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136670
rosa_rugosa	Rorug02G0140000
rosa_samantha	Rh2BG202400 Rh2CG195600 Rh2DG197900
rosa_wichuraiana	Rw2G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	212, 748
Acc65I	GGTACC	1 cut(s)	1026
AccB1I	GGYRCC	1 cut(s)	1026
AccBSI	CCGCTC	1 cut(s)	35
AccII	CGCG	3 cut(s)	122, 288, 665
AciI	CCGC	8 cut(s)	33, 133, 288, 366, 577, 716, 768, 924
AclI	AACGTT	1 cut(s)	1046
AclWI	GGATC	1 cut(s)	1142
AcoI	YGGCCR	2 cut(s)	552, 717
AcsI	RAATTY	1 cut(s)	946
AcuI	CTGAAG	1 cut(s)	1093
AfaI	GTAC	5 cut(s)	317, 662, 812, 843, 1028
AfiI	CCNNNNNNNGG	3 cut(s)	225, 486, 1036
AgsI	TTSAA	4 cut(s)	62, 169, 1063, 1116
AloI	GAACNNNNNNTCC	2 cut(s)	1031, 1063
AluBI	AGCT	6 cut(s)	6, 172, 261, 511, 537, 782
AluI	AGCT	6 cut(s)	6, 172, 261, 511, 537, 782
Alw21I	GWGCWC	3 cut(s)	8, 263, 784
AlwI	GGATC	1 cut(s)	1142
AoxI	GGCC	7 cut(s)	196, 289, 460, 552, 594, 717, 1031
ApeKI	GCWGC	1 cut(s)	667
ApoI	RAATTY	1 cut(s)	946
Asp718I	GGTACC	1 cut(s)	1026
AspLEI	GCGC	3 cut(s)	124, 231, 667
AspS9I	GGNCC	3 cut(s)	196, 456, 595
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	1026
BanII	GRGCYC	3 cut(s)	8, 263, 784
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	3 cut(s)	8, 263, 784
BbvI	GCAGC	1 cut(s)	679
BccI	CCATC	6 cut(s)	61, 104, 272, 605, 728, 792
BceAI	ACGGC	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	487
BisI	GCNGC	3 cut(s)	289, 668, 717
BlsI	GCNGC	3 cut(s)	290, 669, 718
Bme1390I	CCNGG	1 cut(s)	487
Bme18I	GGWCC	1 cut(s)	456
BmgT120I	GGNCC	3 cut(s)	196, 456, 595
BmiI	GGNNCC	1 cut(s)	1028
BmrFI	CCNGG	1 cut(s)	487
BmsI	GCATC	3 cut(s)	382, 666, 886
BpiI	GAAGAC	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	277
BpuEI	CTTGAG	1 cut(s)	806
BpuMI	CCSGG	1 cut(s)	487
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	192, 486
BsaXI	ACNNNNNCTCC	6 cut(s)	19, 49, 263, 293, 729, 759
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 486, 1036
Bse118I	RCCGGY	2 cut(s)	458, 1029
Bse3DI	GCAATG	2 cut(s)	409, 975
Bse8I	GATNNNNATC	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	192, 486
BseGI	GGATG	9 cut(s)	96, 475, 496, 595, 681, 739, 901, 937, 1129
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	3 cut(s)	225, 486, 1036
BseMI	GCAATG	2 cut(s)	409, 975
BseRI	GAGGAG	3 cut(s)	98, 119, 191
BseXI	GCAGC	1 cut(s)	679
Bsh1236I	CGCG	3 cut(s)	122, 288, 665
BshFI	GGCC	7 cut(s)	198, 291, 462, 554, 596, 719, 1033
BshNI	GGYRCC	1 cut(s)	1026
BsiHKAI	GWGCWC	3 cut(s)	8, 263, 784
BsiSI	CCGG	7 cut(s)	226, 396, 459, 486, 527, 731, 1030
BslFI	GGGAC	1 cut(s)	1110
BslI	CCNNNNNNNGG	3 cut(s)	225, 486, 1036
BsmFI	GGGAC	1 cut(s)	1110
BsmI	GAATGC	1 cut(s)	1069
BsnI	GGCC	7 cut(s)	198, 291, 462, 554, 596, 719, 1033
Bsp1286I	GDGCHC	3 cut(s)	8, 263, 784
Bsp1407I	TGTACA	2 cut(s)	315, 841
Bsp143I	GATC	4 cut(s)	78, 442, 1134, 1191
BspACI	CCGC	8 cut(s)	33, 133, 288, 366, 577, 716, 768, 924
BspANI	GGCC	7 cut(s)	198, 291, 462, 554, 596, 719, 1033
BspFNI	CGCG	3 cut(s)	122, 288, 665
BspLI	GGNNCC	1 cut(s)	1028
BspPI	GGATC	1 cut(s)	1142
BspT107I	GGYRCC	1 cut(s)	1026
BsrBI	CCGCTC	1 cut(s)	35
BsrDI	GCAATG	2 cut(s)	409, 975
BsrFI	RCCGGY	2 cut(s)	458, 1029
BsrGI	TGTACA	2 cut(s)	315, 841
BssAI	RCCGGY	2 cut(s)	458, 1029
BssECI	CCNNGG	2 cut(s)	192, 486
BssMI	GATC	4 cut(s)	78, 442, 1134, 1191
BssT1I	CCWWGG	1 cut(s)	192
Bst4CI	ACNGT	3 cut(s)	247, 745, 1179
Bst6I	CTCTTC	1 cut(s)	227
BstAPI	GCANNNNNTGC	1 cut(s)	676
BstAUI	TGTACA	2 cut(s)	315, 841
BstC8I	GCNNGC	3 cut(s)	714, 766, 770
BstEII	GGTNACC	1 cut(s)	22
BstF5I	GGATG	9 cut(s)	96, 475, 496, 595, 681, 739, 901, 937, 1129
BstFNI	CGCG	3 cut(s)	122, 288, 665
BstHHI	GCGC	3 cut(s)	124, 231, 667
BstKTI	GATC	4 cut(s)	81, 445, 1137, 1194
BstMBI	GATC	4 cut(s)	78, 442, 1134, 1191
BstMWI	GCNNNNNNNGC	2 cut(s)	676, 754
BstPI	GGTNACC	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	485
BstUI	CGCG	3 cut(s)	122, 288, 665
BstV1I	GCAGC	1 cut(s)	679
BstV2I	GAAGAC	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	19
BsuRI	GGCC	7 cut(s)	198, 291, 462, 554, 596, 719, 1033
BtsCI	GGATG	9 cut(s)	96, 475, 496, 595, 681, 739, 901, 937, 1129
BtsIMutI	CAGTG	1 cut(s)	1012
Cac8I	GCNNGC	3 cut(s)	714, 766, 770
CfoI	GCGC	3 cut(s)	124, 231, 667
Cfr10I	RCCGGY	2 cut(s)	458, 1029
Cfr13I	GGNCC	3 cut(s)	196, 456, 595
Csp6I	GTAC	5 cut(s)	316, 661, 811, 842, 1027
CviAII	CATG	7 cut(s)	310, 381, 556, 671, 952, 974, 1165
CviQI	GTAC	5 cut(s)	316, 661, 811, 842, 1027
DpnI	GATC	4 cut(s)	80, 444, 1136, 1193
DpnII	GATC	4 cut(s)	78, 442, 1134, 1191
DrdI	GACNNNNNNGTC	2 cut(s)	212, 748
DseDI	GACNNNNNNGTC	2 cut(s)	212, 748
EaeI	YGGCCR	2 cut(s)	552, 717
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	122
Ecl136II	GAGCTC	3 cut(s)	6, 261, 782
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	3 cut(s)	8, 263, 784
Eco47I	GGWCC	1 cut(s)	456
Eco53kI	GAGCTC	3 cut(s)	6, 261, 782
Eco57I	CTGAAG	1 cut(s)	1093
Eco91I	GGTNACC	1 cut(s)	22
EcoICRI	GAGCTC	3 cut(s)	6, 261, 782
EcoO65I	GGTNACC	1 cut(s)	22
EcoRI	GAATTC	1 cut(s)	946
EcoT14I	CCWWGG	1 cut(s)	192
EcoT22I	ATGCAT	1 cut(s)	975
EcoT38I	GRGCYC	3 cut(s)	8, 263, 784
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	7 cut(s)	313, 384, 559, 674, 955, 977, 1168
FaqI	GGGAC	1 cut(s)	1110
FatI	CATG	7 cut(s)	309, 380, 555, 670, 951, 973, 1164
FauI	CCCGC	3 cut(s)	570, 761, 917
Fnu4HI	GCNGC	3 cut(s)	289, 668, 717
FokI	GGATG	9 cut(s)	83, 482, 503, 602, 688, 746, 908, 944, 1136
FriOI	GRGCYC	3 cut(s)	8, 263, 784
Fsp4HI	GCNGC	3 cut(s)	289, 668, 717
GlaI	GCGC	3 cut(s)	123, 230, 666
GluI	GCNGC	3 cut(s)	289, 668, 717
GsuI	CTGGAG	1 cut(s)	277
HaeIII	GGCC	7 cut(s)	198, 291, 462, 554, 596, 719, 1033
HapII	CCGG	7 cut(s)	226, 396, 459, 486, 527, 731, 1030
HhaI	GCGC	3 cut(s)	124, 231, 667
Hin1II	CATG	7 cut(s)	313, 384, 559, 674, 955, 977, 1168
Hin6I	GCGC	3 cut(s)	122, 229, 665
HinP1I	GCGC	3 cut(s)	122, 229, 665
HindIII	AAGCTT	1 cut(s)	535
HinfI	GANTC	6 cut(s)	66, 339, 402, 437, 788, 829
HpaII	CCGG	7 cut(s)	226, 396, 459, 486, 527, 731, 1030
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	318, 475, 1175
Hpy188I	TCNGA	5 cut(s)	39, 442, 705, 834, 1191
Hpy188III	TCNNGA	5 cut(s)	76, 256, 296, 454, 785
Hpy8I	GTNNAC	3 cut(s)	318, 475, 1175
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	5 cut(s)	302, 416, 922, 1114, 1114
HpyCH4III	ACNGT	3 cut(s)	247, 745, 1179
HpyCH4IV	ACGT	1 cut(s)	1046
HpyCH4V	TGCA	5 cut(s)	503, 899, 968, 973, 1164
HpyF10VI	GCNNNNNNNGC	2 cut(s)	676, 754
HpySE526I	ACGT	1 cut(s)	1046
Hsp92II	CATG	7 cut(s)	313, 384, 559, 674, 955, 977, 1168
HspAI	GCGC	3 cut(s)	122, 229, 665
KpnI	GGTACC	1 cut(s)	1030
Kzo9I	GATC	4 cut(s)	78, 442, 1134, 1191
LmnI	GCTCC	7 cut(s)	11, 40, 177, 185, 258, 266, 779
Lsp1109I	GCAGC	1 cut(s)	679
LweI	GCATC	3 cut(s)	382, 666, 886
MaeII	ACGT	1 cut(s)	1046
MaeIII	GTNAC	3 cut(s)	22, 67, 739
MalI	GATC	4 cut(s)	80, 444, 1136, 1193
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	4 cut(s)	78, 442, 1134, 1191
MboII	GAAGA	5 cut(s)	214, 241, 244, 411, 1099
MfeI	CAATTG	3 cut(s)	57, 349, 387
MhlI	GDGCHC	3 cut(s)	8, 263, 784
MluCI	AATT	5 cut(s)	57, 349, 387, 946, 1020
MlyI	GAGTC	3 cut(s)	75, 348, 797
MmeI	TCCRAC	3 cut(s)	62, 199, 367
Mph1103I	ATGCAT	1 cut(s)	975
MseI	TTAA	3 cut(s)	548, 726, 1201
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	7 cut(s)	226, 396, 459, 486, 527, 731, 1030
MspR9I	CCNGG	1 cut(s)	487
MunI	CAATTG	3 cut(s)	57, 349, 387
Mva1269I	GAATGC	1 cut(s)	1069
MvnI	CGCG	3 cut(s)	122, 288, 665
MwoI	GCNNNNNNNGC	2 cut(s)	676, 754
NciI	CCSGG	1 cut(s)	487
NdeII	GATC	4 cut(s)	78, 442, 1134, 1191
NlaIII	CATG	7 cut(s)	313, 384, 559, 674, 955, 977, 1168
NlaIV	GGNNCC	1 cut(s)	1028
NmeAIII	GCCGAG	1 cut(s)	1010
NmuCI	GTSAC	3 cut(s)	22, 67, 739
NsiI	ATGCAT	1 cut(s)	975
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 1043
PctI	GAATGC	1 cut(s)	1069
PfeI	GAWTC	3 cut(s)	402, 437, 829
PkrI	GCNGC	3 cut(s)	290, 669, 718
PleI	GAGTC	3 cut(s)	74, 347, 796
PpsI	GAGTC	3 cut(s)	74, 347, 796
Psp124BI	GAGCTC	3 cut(s)	8, 263, 784
Psp1406I	AACGTT	1 cut(s)	1046
PspEI	GGTNACC	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	1028
PspPI	GGNCC	3 cut(s)	196, 456, 595
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	5 cut(s)	317, 662, 812, 843, 1028
RsaNI	GTAC	5 cut(s)	316, 661, 811, 842, 1027
RseI	CAYNNNNRTG	1 cut(s)	323
SacI	GAGCTC	3 cut(s)	8, 263, 784
SaqAI	TTAA	3 cut(s)	548, 726, 1201
SatI	GCNGC	3 cut(s)	289, 668, 717
Sau3AI	GATC	4 cut(s)	78, 442, 1134, 1191
Sau96I	GGNCC	3 cut(s)	196, 456, 595
SchI	GAGTC	3 cut(s)	75, 348, 797
ScrFI	CCNGG	1 cut(s)	487
SduI	GDGCHC	3 cut(s)	8, 263, 784
SfaNI	GCATC	3 cut(s)	382, 666, 886
SinI	GGWCC	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	785
SmoI	CTYRAG	1 cut(s)	785
Sse9I	AATT	5 cut(s)	57, 349, 387, 946, 1020
SsiI	CCGC	8 cut(s)	33, 133, 288, 366, 577, 716, 768, 924
SstI	GAGCTC	3 cut(s)	8, 263, 784
StyD4I	CCNGG	1 cut(s)	485
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	247, 745, 1179
TaiI	ACGT	1 cut(s)	1049
TaqI	TCGA	4 cut(s)	81, 204, 516, 1137
TasI	AATT	5 cut(s)	57, 349, 387, 946, 1020
TatI	WGTACW	2 cut(s)	315, 841
TauI	GCSGC	2 cut(s)	291, 719
TfiI	GAWTC	3 cut(s)	402, 437, 829
Tru1I	TTAA	3 cut(s)	548, 726, 1201
Tru9I	TTAA	3 cut(s)	548, 726, 1201
TscAI	CASTG	1 cut(s)	1012
TseFI	GTSAC	3 cut(s)	22, 67, 739
TseI	GCWGC	1 cut(s)	667
Tsp45I	GTSAC	3 cut(s)	22, 67, 739
TspDTI	ATGAA	7 cut(s)	389, 398, 632, 794, 1039, 1133, 1140
TspGWI	ACGGA	2 cut(s)	202, 1052
TspRI	CASTG	1 cut(s)	1012
VpaK11BI	GGWCC	1 cut(s)	456
XapI	RAATTY	1 cut(s)	946
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
Zsp2I	ATGCAT	1 cut(s)	975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.