Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007106.1

Orthogroup ID

OG0016600

Physical Location & Seq

Genomic Coordinates Forward (+)

67 .. 1614

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007106.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

atgttctacacccaaatgctcacaaatggagtccaacccaattgcttcacattctccgcattgatgaagtcatgctcaattgatgccggaaaagtccttcattgccagactatcaagttggggtttgattccgatgtgtatgtcaggaccggccttgtggatgtttatgccagagccggggatgttgtgggtgcaagacagctgttcgatacaatgccggagagaagcttggtttctttaacggccatgattacttgctatgcgaagcggggagaggtggatgaggcccgtgtgttgtttgatggaatgaaagagagagatgtggtgtgctggaatgtgatgattgacgggtatgcgcagcatgggatgccgaatgaggctttgttgctgtttcggaaaatgctggcggccaaagttaagccggatggagcgactgtgctgtctttgctctctgcgtgcgggcagattggagctcttgagtctggtagatggcttcattcgtacattgagaataatgggattcggattgatgtacaggttggttctgctttgattgatatgtatagtaagtgtggtagttgggaggatgcaaggctcgttttcgatgggattggcgggaaggatgttgttgtttggaattccatgattgttgggtatgcaatgcatgggtttagccgagaggcattggagttgttcagtgagatgtgtagaattgggtaccggcctacggatataacgttcattggtgttttgaatgcttgtgcttatgccggtttggtcagcgagggacaagctttcttcagttcaatgaaggatgaatatgggatcgaaccaaagattgagcattatgggtgcatggtaaatcttctcagccgtgctgggaaggtagaagaagcgtatgagtttgtcaagaacatgaagattgagcctgatccagtcttatggggaactatactcggagcttgtagactccatggtaacattgctttgggagagcggatagcagagttccttgttggacaaaatcttgcgaattctggaacatatattcttctttctaacatatacgccgcagctgggaactgggatggggtggcaaaggtgaggaccttgatgaaaaacagtgggattcggaaggagcccggctgtagctcaattgaagtgaataataaggtacatgagttcctagccggggatcagaagtgcccgaggaccaaagaggtatatacgatgatcgagaagataaatgattggctcaaggcccacgaatacaccccacaaacagaaactgtgttacacgatttaggggagaaggaaaaagagcagtcccttgaagttcatagtgagaaggttgcaattgctttcgggctgattagtactcaacccggaactaccctcaaaatcgtgaagaacctacgtgtgtgttccgactgtcatgctgtgaccaagttaatatcaaaaatcactggacgaaagattgtaatgagggacagaaataggtttcaccactttgtgaatggttcgtgttcttgtggtgattactggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

515

Amino Acids

57.14

Weight (kDa)

6.51

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37380
fragaria_vesca	FvH4_1g16950
malus_domestica	MD15G1290500.v1.1
prunus_persica	Prupe.6G226400_v2.0.a1
pyrus_communis	pycom15g25420
rosa_chinensis	RchiOBHm_Chr2g0107031
rosa_laevigata	RLG00000017551
rosa_multiflora	Rmu_sc0007106.1_g000001
rosa_roxburghii	Rroxscaffold_2G00136670
rosa_rugosa	Rorug02G0140000
rosa_samantha	Rh2BG202400 Rh2CG195600 Rh2DG197900
rosa_wichuraiana	Rw2G015050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	439
Acc16I	TGCGCA	1 cut(s)	357
Acc65I	GGTACC	1 cut(s)	717
AccB1I	GGYRCC	1 cut(s)	717
AccBSI	CCGCTC	1 cut(s)	997
AccI	GTMKAC	1 cut(s)	967
AciI	CCGC	7 cut(s)	57, 268, 407, 459, 615, 997, 1071
AclI	AACGTT	1 cut(s)	737
AclWI	GGATC	3 cut(s)	833, 926, 1203
AcoI	YGGCCR	2 cut(s)	243, 408
AcsI	RAATTY	2 cut(s)	637, 1033
AcuI	CTGAAG	1 cut(s)	784
AdeI	CACNNNGTG	1 cut(s)	1513
AfaI	GTAC	5 cut(s)	503, 534, 719, 1176, 1378
AfiI	CCNNNNNNNGG	4 cut(s)	177, 727, 1077, 1192
AflIII	ACRYGT	1 cut(s)	1417
AgsI	TTSAA	4 cut(s)	754, 807, 1160, 1334
AloI	GAACNNNNNNTCC	2 cut(s)	722, 754
AluBI	AGCT	7 cut(s)	202, 228, 473, 794, 962, 1076, 1152
AluI	AGCT	7 cut(s)	202, 228, 473, 794, 962, 1076, 1152
Alw21I	GWGCWC	1 cut(s)	475
AlwI	GGATC	3 cut(s)	833, 926, 1203
AlwNI	CAGNNNCTG	1 cut(s)	1289
Ama87I	CYCGRG	1 cut(s)	1207
AoxI	GGCC	6 cut(s)	151, 243, 285, 408, 722, 1260
ApeKI	GCWGC	2 cut(s)	358, 1073
ApoI	RAATTY	2 cut(s)	637, 1033
Asp718I	GGTACC	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	5 cut(s)	147, 286, 1107, 1212, 1261
AsuC2I	CCSGG	4 cut(s)	178, 1143, 1192, 1386
AsuHPI	GGTGA	3 cut(s)	1114, 1496, 1547
AvaI	CYCGRG	1 cut(s)	1207
AvaII	GGWCC	3 cut(s)	147, 1107, 1212
BaeGI	GKGCMC	1 cut(s)	1208
BaeI	ACNNNNGTAYC	2 cut(s)	1166, 1199
BanI	GGYRCC	1 cut(s)	717
BanII	GRGCYC	2 cut(s)	475, 1143
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	2 cut(s)	370, 1085
BccI	CCATC	5 cut(s)	296, 419, 483, 599, 1082
BceAI	ACGGC	2 cut(s)	258, 858
BcgI	CGANNNNNNTGC	2 cut(s)	1418, 1452
BcnI	CCSGG	4 cut(s)	178, 1143, 1192, 1386
BfaI	CTAG	1 cut(s)	1187
BfmI	CTRYAG	1 cut(s)	1147
BisI	GCNGC	4 cut(s)	359, 408, 1071, 1074
BlsI	GCNGC	4 cut(s)	360, 409, 1072, 1075
BmcAI	AGTACT	1 cut(s)	1378
Bme1390I	CCNGG	4 cut(s)	178, 1143, 1192, 1386
Bme18I	GGWCC	3 cut(s)	147, 1107, 1212
BmeT110I	CYCGRG	1 cut(s)	1207
BmgT120I	GGNCC	5 cut(s)	147, 286, 1107, 1212, 1261
BmiI	GGNNCC	2 cut(s)	719, 1140
BmrFI	CCNGG	4 cut(s)	178, 1143, 1192, 1386
BmrI	ACTGGG	1 cut(s)	1093
BmsI	GCATC	3 cut(s)	73, 357, 577
BmuI	ACTGGG	1 cut(s)	1093
BpuEI	CTTGAG	2 cut(s)	497, 1241
BpuMI	CCSGG	4 cut(s)	178, 1143, 1192, 1386
BsaAI	YACGTR	1 cut(s)	1418
BsaJI	CCNNGG	4 cut(s)	177, 973, 1191, 1208
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	4 cut(s)	177, 727, 1077, 1192
Bse118I	RCCGGY	3 cut(s)	149, 720, 770
Bse1I	ACTGG	4 cut(s)	935, 1088, 1471, 1547
Bse3DI	GCAATG	3 cut(s)	100, 666, 981
BseDI	CCNNGG	4 cut(s)	177, 973, 1191, 1208
BseGI	GGATG	9 cut(s)	166, 187, 286, 372, 430, 592, 628, 820, 1093
BseLI	CCNNNNNNNGG	4 cut(s)	177, 727, 1077, 1192
BseMI	GCAATG	3 cut(s)	100, 666, 981
BseMII	CTCAG	1 cut(s)	883
BseNI	ACTGG	4 cut(s)	935, 1088, 1471, 1547
BseSI	GKGCMC	1 cut(s)	1208
BseXI	GCAGC	2 cut(s)	370, 1085
BseYI	CCCAGC	2 cut(s)	878, 1076
BshFI	GGCC	6 cut(s)	153, 245, 287, 410, 724, 1262
BshNI	GGYRCC	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	475
BsiHKCI	CYCGRG	1 cut(s)	1207
BslFI	GGGAC	3 cut(s)	801, 1312, 1502
BslI	CCNNNNNNNGG	4 cut(s)	177, 727, 1077, 1192
BsmFI	GGGAC	3 cut(s)	801, 1312, 1502
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	6 cut(s)	153, 245, 287, 410, 724, 1262
BsoBI	CYCGRG	1 cut(s)	1207
Bsp1286I	GDGCHC	3 cut(s)	475, 1143, 1208
Bsp1407I	TGTACA	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	825, 931, 1195, 1233
Bsp19I	CCATGG	1 cut(s)	973
BspACI	CCGC	7 cut(s)	57, 268, 407, 459, 615, 997, 1071
BspANI	GGCC	6 cut(s)	153, 245, 287, 410, 724, 1262
BspCNI	CTCAG	1 cut(s)	882
BspLI	GGNNCC	2 cut(s)	719, 1140
BspPI	GGATC	3 cut(s)	833, 926, 1203
BspT107I	GGYRCC	1 cut(s)	717
BsrBI	CCGCTC	1 cut(s)	997
BsrDI	GCAATG	3 cut(s)	100, 666, 981
BsrFI	RCCGGY	3 cut(s)	149, 720, 770
BsrGI	TGTACA	1 cut(s)	532
BsrI	ACTGG	4 cut(s)	935, 1088, 1471, 1547
BssAI	RCCGGY	3 cut(s)	149, 720, 770
BssECI	CCNNGG	4 cut(s)	177, 973, 1191, 1208
BssMI	GATC	4 cut(s)	825, 931, 1195, 1233
BssT1I	CCWWGG	1 cut(s)	973
Bst4CI	ACNGT	4 cut(s)	436, 1124, 1291, 1433
BstAPI	GCANNNNNTGC	1 cut(s)	367
BstAUI	TGTACA	1 cut(s)	532
BstBAI	YACGTR	1 cut(s)	1418
BstC8I	GCNNGC	3 cut(s)	405, 457, 461
BstDEI	CTNAG	1 cut(s)	869
BstDSI	CCRYGG	1 cut(s)	973
BstF5I	GGATG	9 cut(s)	166, 187, 286, 372, 430, 592, 628, 820, 1093
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	4 cut(s)	828, 934, 1198, 1236
BstMBI	GATC	4 cut(s)	825, 931, 1195, 1233
BstMWI	GCNNNNNNNGC	2 cut(s)	367, 445
BstSCI	CCNGG	4 cut(s)	176, 1141, 1190, 1384
BstSFI	CTRYAG	1 cut(s)	1147
BstSLI	GKGCMC	1 cut(s)	1208
BstV1I	GCAGC	2 cut(s)	370, 1085
BstXI	CCANNNNNNTGG	1 cut(s)	942
BsuRI	GGCC	6 cut(s)	153, 245, 287, 410, 724, 1262
BtgI	CCRYGG	1 cut(s)	973
BtsCI	GGATG	9 cut(s)	166, 187, 286, 372, 430, 592, 628, 820, 1093
BtsIMutI	CAGTG	3 cut(s)	703, 1129, 1464
Cac8I	GCNNGC	3 cut(s)	405, 457, 461
CaiI	CAGNNNCTG	1 cut(s)	1289
CfoI	GCGC	1 cut(s)	358
Cfr10I	RCCGGY	3 cut(s)	149, 720, 770
Cfr13I	GGNCC	5 cut(s)	147, 286, 1107, 1212, 1261
Csp6I	GTAC	5 cut(s)	502, 533, 718, 1175, 1377
CviQI	GTAC	5 cut(s)	502, 533, 718, 1175, 1377
DdeI	CTNAG	1 cut(s)	869
DpnI	GATC	4 cut(s)	827, 933, 1197, 1235
DpnII	GATC	4 cut(s)	825, 931, 1195, 1233
DraIII	CACNNNGTG	1 cut(s)	1513
DrdI	GACNNNNNNGTC	1 cut(s)	439
DseDI	GACNNNNNNGTC	1 cut(s)	439
EaeI	YGGCCR	2 cut(s)	243, 408
Ecl136II	GAGCTC	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	973
Eco24I	GRGCYC	2 cut(s)	475, 1143
Eco47I	GGWCC	3 cut(s)	147, 1107, 1212
Eco53kI	GAGCTC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	784
Eco88I	CYCGRG	1 cut(s)	1207
EcoICRI	GAGCTC	1 cut(s)	473
EcoO109I	RGGNCCY	1 cut(s)	1107
EcoRI	GAATTC	2 cut(s)	637, 1033
EcoT14I	CCWWGG	1 cut(s)	973
EcoT22I	ATGCAT	1 cut(s)	666
EcoT38I	GRGCYC	2 cut(s)	475, 1143
ErhI	CCWWGG	1 cut(s)	973
FaqI	GGGAC	3 cut(s)	801, 1312, 1502
FauI	CCCGC	3 cut(s)	261, 452, 608
FblI	GTMKAC	1 cut(s)	967
Fnu4HI	GCNGC	4 cut(s)	359, 408, 1071, 1074
FokI	GGATG	9 cut(s)	173, 194, 293, 379, 437, 599, 635, 827, 1100
FriOI	GRGCYC	2 cut(s)	475, 1143
Fsp4HI	GCNGC	4 cut(s)	359, 408, 1071, 1074
FspBI	CTAG	1 cut(s)	1187
FspI	TGCGCA	1 cut(s)	357
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	4 cut(s)	359, 408, 1071, 1074
GsaI	CCCAGC	2 cut(s)	882, 1080
HaeIII	GGCC	6 cut(s)	153, 245, 287, 410, 724, 1262
HhaI	GCGC	1 cut(s)	358
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HindIII	AAGCTT	2 cut(s)	226, 792
HinfI	GANTC	6 cut(s)	30, 128, 479, 520, 969, 1129
HphI	GGTGA	3 cut(s)	1114, 1496, 1547
Hpy166II	GTNNAC	1 cut(s)	968
Hpy188I	TCNGA	7 cut(s)	133, 396, 525, 959, 1134, 1200, 1429
Hpy188III	TCNNGA	6 cut(s)	145, 476, 910, 1038, 1237, 1405
Hpy8I	GTNNAC	1 cut(s)	968
HpyAV	CCTTC	7 cut(s)	107, 613, 805, 877, 1129, 1306, 1342
HpyCH4III	ACNGT	4 cut(s)	436, 1124, 1291, 1433
HpyCH4IV	ACGT	2 cut(s)	737, 1417
HpyCH4V	TGCA	6 cut(s)	194, 590, 659, 664, 855, 1355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	367, 445
HpyF3I	CTNAG	1 cut(s)	869
HpySE526I	ACGT	2 cut(s)	737, 1417
HspAI	GCGC	1 cut(s)	356
KpnI	GGTACC	1 cut(s)	721
Kzo9I	GATC	4 cut(s)	825, 931, 1195, 1233
LmnI	GCTCC	4 cut(s)	428, 470, 959, 1138
Lsp1109I	GCAGC	2 cut(s)	370, 1085
LweI	GCATC	3 cut(s)	73, 357, 577
MaeI	CTAG	1 cut(s)	1187
MaeII	ACGT	2 cut(s)	737, 1417
MaeIII	GTNAC	3 cut(s)	977, 1293, 1441
MalI	GATC	4 cut(s)	827, 933, 1197, 1235
MbiI	CCGCTC	1 cut(s)	997
MboI	GATC	4 cut(s)	825, 931, 1195, 1233
MboII	GAAGA	7 cut(s)	790, 857, 902, 931, 1043, 1252, 1420
MfeI	CAATTG	4 cut(s)	40, 78, 1155, 1356
MhlI	GDGCHC	3 cut(s)	475, 1143, 1208
MluCI	AATT	7 cut(s)	40, 78, 637, 711, 1033, 1155, 1356
MlyI	GAGTC	3 cut(s)	39, 488, 963
MmeI	TCCRAC	3 cut(s)	58, 997, 1452
Mph1103I	ATGCAT	1 cut(s)	666
MseI	TTAA	3 cut(s)	239, 417, 1451
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	2 cut(s)	202, 1076
MspR9I	CCNGG	4 cut(s)	178, 1143, 1192, 1386
MunI	CAATTG	4 cut(s)	40, 78, 1155, 1356
Mva1269I	GAATGC	1 cut(s)	760
MwoI	GCNNNNNNNGC	2 cut(s)	367, 445
NciI	CCSGG	4 cut(s)	178, 1143, 1192, 1386
NcoI	CCATGG	1 cut(s)	973
NdeII	GATC	4 cut(s)	825, 931, 1195, 1233
NlaIV	GGNNCC	2 cut(s)	719, 1140
NmeAIII	GCCGAG	1 cut(s)	701
NmuCI	GTSAC	1 cut(s)	1441
NsbI	TGCGCA	1 cut(s)	357
NsiI	ATGCAT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	734
PctI	GAATGC	1 cut(s)	760
PfeI	GAWTC	3 cut(s)	128, 520, 1129
PkrI	GCNGC	4 cut(s)	360, 409, 1072, 1075
PleI	GAGTC	3 cut(s)	38, 487, 963
PpsI	GAGTC	3 cut(s)	38, 487, 963
Ppu21I	YACGTR	1 cut(s)	1418
PpuMI	RGGWCCY	1 cut(s)	1107
Psp124BI	GAGCTC	1 cut(s)	475
Psp1406I	AACGTT	1 cut(s)	737
Psp5II	RGGWCCY	1 cut(s)	1107
PspFI	CCCAGC	2 cut(s)	878, 1076
PspN4I	GGNNCC	2 cut(s)	719, 1140
PspPI	GGNCC	5 cut(s)	147, 286, 1107, 1212, 1261
PspPPI	RGGWCCY	1 cut(s)	1107
PstNI	CAGNNNCTG	1 cut(s)	1289
PvuII	CAGCTG	2 cut(s)	202, 1076
RsaI	GTAC	5 cut(s)	503, 534, 719, 1176, 1378
RsaNI	GTAC	5 cut(s)	502, 533, 718, 1175, 1377
RseI	CAYNNNNRTG	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	475
SaqAI	TTAA	3 cut(s)	239, 417, 1451
SatI	GCNGC	4 cut(s)	359, 408, 1071, 1074
Sau3AI	GATC	4 cut(s)	825, 931, 1195, 1233
Sau96I	GGNCC	5 cut(s)	147, 286, 1107, 1212, 1261
ScaI	AGTACT	1 cut(s)	1378
SchI	GAGTC	3 cut(s)	39, 488, 963
ScrFI	CCNGG	4 cut(s)	178, 1143, 1192, 1386
SduI	GDGCHC	3 cut(s)	475, 1143, 1208
SfaNI	GCATC	3 cut(s)	73, 357, 577
SfcI	CTRYAG	1 cut(s)	1147
SinI	GGWCC	3 cut(s)	147, 1107, 1212
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	476, 1256
SmoI	CTYRAG	2 cut(s)	476, 1256
Sse9I	AATT	7 cut(s)	40, 78, 637, 711, 1033, 1155, 1356
SsiI	CCGC	7 cut(s)	57, 268, 407, 459, 615, 997, 1071
SspMI	CTAG	1 cut(s)	1187
SstI	GAGCTC	1 cut(s)	475
StyD4I	CCNGG	4 cut(s)	176, 1141, 1190, 1384
StyI	CCWWGG	1 cut(s)	973
TaaI	ACNGT	4 cut(s)	436, 1124, 1291, 1433
TaiI	ACGT	2 cut(s)	740, 1420
TaqI	TCGA	4 cut(s)	207, 603, 828, 1236
TasI	AATT	7 cut(s)	40, 78, 637, 711, 1033, 1155, 1356
TatI	WGTACW	2 cut(s)	532, 1376
TauI	GCSGC	2 cut(s)	410, 1073
TfiI	GAWTC	3 cut(s)	128, 520, 1129
Tru1I	TTAA	3 cut(s)	239, 417, 1451
Tru9I	TTAA	3 cut(s)	239, 417, 1451
TscAI	CASTG	3 cut(s)	703, 1129, 1471
TseFI	GTSAC	1 cut(s)	1441
TseI	GCWGC	2 cut(s)	358, 1073
Tsp45I	GTSAC	1 cut(s)	1441
TspGWI	ACGGA	1 cut(s)	743
TspRI	CASTG	3 cut(s)	703, 1129, 1471
VpaK11BI	GGWCC	3 cut(s)	147, 1107, 1212
XapI	RAATTY	2 cut(s)	637, 1033
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1514
XmiI	GTMKAC	1 cut(s)	967
XspI	CTAG	1 cut(s)	1187
ZrmI	AGTACT	1 cut(s)	1378
Zsp2I	ATGCAT	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.