Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015816

Physical Location & Seq

Genomic Coordinates Forward (+)

27700465 .. 27703372

Gene Structure 2908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G307400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGCTGAACATGATATTTGCTTGGGTACTTGTTATTCAAATTTTTTTCTTCTCTTTTTGTTTCTTCTTTCCTCCGATACACGGCAGCCTTCAAAGTACTGACACTAAACATGATAAGGGTTTGCATCTGATGTCTCGAATTTCATTGCCACCTTCTCCGGCACCAGAGGCTGTTAGCCCAAGCTACAATCCTACCACTATTTTCAATGTAAGATCTTATGGTGCCATTGGGGATGGTGTTACTGATGACACACAAGCATTCAAGCTGGCTTGGGACACGGCTTGTCAAACTGAAGATTCAGAAGTTCTTGTTCCTAAAGGTCATACCTTTATGATACAGTCTACAATATTCACAGGGCCATGTAAACCTGGCCTCAAAATGCAGATTGATGGGACACTAATGCCACCAGATGGACCTGATTCATGGCCAAGAAATAACAGCAAGAGACAATGGCTTGTTTTCTACAGAATCAATGAAATGTCAATGCAAGGTACTGGTGTAATAGATGGGAGAGGAGAGAAATGGTGGAACCTTCCTTGCAAGCCGCACAAAGGTTTTACTGGAACAACACAGCCTGGTCCTTGTGATAGCCCAGTTGCCATAAGATTTTTCATGAGCTCTAATCTGAGTGTGATAGGACTCAAAGTTAAGAACAGCCCCCAGTTTCATTTCCGGTTCGATAACTGTCAAAACGTCTACATAGAATCACTTAACATAAAAACACCTGCTCTAAGTCCCAATACAGATGGAATTCACATAGAGAACACAAACAATGTGAAACTATATAATTCAGTCATCTCCAATGGTGATGACTGCGTATCAATTGGAGCAGGTTGTTATAATGTGGAGATTAGGAATATTACTTGTGGTCCAAGTCATGGAATAAGCATTGGAAGTCTTGGAATTCGCAATTCTCGAGCATGTGTTTCGAACATTACAGTTAAGGACTCAATCATCAAGCACTCTGACAATGGGGTTCGAATCAAAACTTGGCAAGGTGGATCAGGGTCTGTGTCAAGAGTAACATTCCAAAACATTCACATGGACACCGTTCGAAACCCGATTTTGTTAGATCAGTACTATTGCCTCACCAAGAAATGCCCTAACCAAACCTCTGCAGTTCACATATCAGATATTTTGTACTCAAAGATAAAAGGTACATATGATGTGAGAAGCCCACCTATGCATTTTGCTTGCAGCGACTCCATGCCATGCACAAATCTCACTCTCTCTGAAGTGGAACTGCTTCCTGCCCAAGGAAAATTTGTGTCAAATCCAATTTGCTGGAGTGCATATGGAACAGTGCAGACCCTTACAATTCCACCAGTTTTCTGCTTGTTGGGGGGCACTCCAGAAATGTTGCCACAGAATGGTAAGGAAAGGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016798 GO:0030312 GO:0040007 GO:0042545 GO:0042547 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28 Pectate_lyase_3

Protein Analysis

463

Amino Acids

50.99

Weight (kDa)

8.24

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56710
fragaria_vesca	FvH4_6g08130
malus_domestica	MD04G1189600.v1.1
prunus_persica	Prupe.6G307400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457981
rosa_laevigata	RLG00000025181
rosa_multiflora	Rmu_sc0000384.1_g000005
rosa_roxburghii	Rroxscaffold_6G00421410
rosa_rugosa	Rorug03G0024000
rosa_samantha	Rh3AG084600 Rh3BG087300 Rh3CG087800 Rh3DG088100
rosa_wichuraiana	Rw0G012380 Rw3G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	840
AarI	CACCTGC	1 cut(s)	733
Acc36I	ACCTGC	2 cut(s)	733, 821
AccB1I	GGYRCC	2 cut(s)	160, 221
AccB7I	CCANNNNNTGG	3 cut(s)	410, 878, 1370
AccI	GTMKAC	2 cut(s)	341, 696
AciI	CCGC	1 cut(s)	545
AclWI	GGATC	1 cut(s)	1009
AcoI	YGGCCR	1 cut(s)	425
AcsI	RAATTY	5 cut(s)	39, 138, 750, 903, 1262
AcuI	CTGAAG	2 cut(s)	312, 1254
AfaI	GTAC	6 cut(s)	27, 97, 493, 1079, 1142, 1159
AfiI	CCNNNNNNNGG	6 cut(s)	80, 410, 551, 878, 1256, 1370
AgsI	TTSAA	4 cut(s)	38, 92, 205, 262
AjnI	CCWGG	2 cut(s)	367, 574
AjuI	GAANNNNNNNTTGG	2 cut(s)	973, 1005
AluBI	AGCT	3 cut(s)	183, 265, 618
AluI	AGCT	3 cut(s)	183, 265, 618
Alw21I	GWGCWC	1 cut(s)	620
Alw26I	GTCTC	2 cut(s)	138, 439
AlwI	GGATC	1 cut(s)	1009
AlwNI	CAGNNNCTG	2 cut(s)	170, 1010
Ama87I	CYCGRG	1 cut(s)	915
AoxI	GGCC	3 cut(s)	356, 370, 425
ApeKI	GCWGC	2 cut(s)	84, 1197
ApoI	RAATTY	5 cut(s)	39, 138, 750, 903, 1262
Asp700I	GAANNNNTTC	1 cut(s)	1245
AspS9I	GGNCC	4 cut(s)	356, 413, 578, 869
AsuHPI	GGTGA	2 cut(s)	818, 1081
AsuII	TTCGAA	3 cut(s)	929, 979, 1054
AvaI	CYCGRG	1 cut(s)	915
AvaII	GGWCC	3 cut(s)	413, 578, 869
BaeGI	GKGCMC	1 cut(s)	1349
BaeI	ACNNNNGTAYC	2 cut(s)	483, 516
BalI	TGGCCA	1 cut(s)	427
BanI	GGYRCC	2 cut(s)	160, 221
BanII	GRGCYC	1 cut(s)	620
Bbv12I	GWGCWC	1 cut(s)	620
BbvI	GCAGC	2 cut(s)	96, 1209
BccI	CCATC	5 cut(s)	227, 383, 404, 500, 740
BceAI	ACGGC	2 cut(s)	97, 294
BcgI	CGANNNNNNTGC	2 cut(s)	909, 943
BciT130I	CCWGG	2 cut(s)	369, 576
BcoDI	GTCTC	2 cut(s)	138, 439
BfmI	CTRYAG	2 cut(s)	463, 1116
BfuAI	ACCTGC	2 cut(s)	733, 821
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	3 cut(s)	85, 545, 1198
BlsI	GCNGC	3 cut(s)	86, 546, 1199
BmcAI	AGTACT	2 cut(s)	97, 1079
Bme1390I	CCNGG	2 cut(s)	369, 576
Bme18I	GGWCC	3 cut(s)	413, 578, 869
BmeT110I	CYCGRG	1 cut(s)	915
BmgT120I	GGNCC	4 cut(s)	356, 413, 578, 869
BmiI	GGNNCC	3 cut(s)	162, 223, 530
BmrFI	CCNGG	2 cut(s)	369, 576
BmrI	ACTGGG	2 cut(s)	587, 655
BmsI	GCATC	1 cut(s)	133
BmuI	ACTGGG	2 cut(s)	587, 655
BpmI	CTGGAG	2 cut(s)	1306, 1335
Bpu14I	TTCGAA	3 cut(s)	929, 979, 1054
BsaJI	CCNNGG	1 cut(s)	1255
BsaWI	WCCGGW	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	6 cut(s)	80, 410, 551, 878, 1256, 1370
Bse1I	ACTGG	5 cut(s)	499, 565, 593, 661, 1325
Bse3DI	GCAATG	1 cut(s)	143
BseBI	CCWGG	2 cut(s)	369, 576
BseDI	CCNNGG	1 cut(s)	1255
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	6 cut(s)	80, 410, 551, 878, 1256, 1370
BseMI	GCAATG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	5 cut(s)	499, 565, 593, 661, 1325
BseRI	GAGGAG	1 cut(s)	528
BseSI	GKGCMC	1 cut(s)	1349
BseXI	GCAGC	2 cut(s)	96, 1209
BsgI	GTGCAG	1 cut(s)	1325
BshFI	GGCC	3 cut(s)	358, 372, 427
BshNI	GGYRCC	2 cut(s)	160, 221
BsiHKAI	GWGCWC	1 cut(s)	620
BsiHKCI	CYCGRG	1 cut(s)	915
BsiSI	CCGG	2 cut(s)	158, 673
BslFI	GGGAC	3 cut(s)	287, 406, 720
BslI	CCNNNNNNNGG	6 cut(s)	80, 410, 551, 878, 1256, 1370
BsmAI	GTCTC	2 cut(s)	138, 439
BsmFI	GGGAC	3 cut(s)	287, 406, 720
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	3 cut(s)	358, 372, 427
BsoBI	CYCGRG	1 cut(s)	915
Bsp119I	TTCGAA	3 cut(s)	929, 979, 1054
Bsp1286I	GDGCHC	2 cut(s)	620, 1349
Bsp143I	GATC	3 cut(s)	212, 1001, 1072
BspACI	CCGC	1 cut(s)	545
BspANI	GGCC	3 cut(s)	358, 372, 427
BspCNI	CTCAG	1 cut(s)	618
BspHI	TCATGA	1 cut(s)	612
BspLI	GGNNCC	3 cut(s)	162, 223, 530
BspMAI	CTGCAG	1 cut(s)	1120
BspMI	ACCTGC	2 cut(s)	733, 821
BspPI	GGATC	1 cut(s)	1009
BspT104I	TTCGAA	3 cut(s)	929, 979, 1054
BspT107I	GGYRCC	2 cut(s)	160, 221
BsrDI	GCAATG	1 cut(s)	143
BsrI	ACTGG	5 cut(s)	499, 565, 593, 661, 1325
BssECI	CCNNGG	1 cut(s)	1255
BssMI	GATC	3 cut(s)	212, 1001, 1072
BssT1I	CCWWGG	1 cut(s)	1255
Bst2UI	CCWGG	2 cut(s)	369, 576
Bst4CI	ACNGT	5 cut(s)	339, 686, 940, 1051, 1303
BstBI	TTCGAA	3 cut(s)	929, 979, 1054
BstC8I	GCNNGC	3 cut(s)	267, 542, 1195
BstDEI	CTNAG	2 cut(s)	626, 731
BstENI	CCTNNNNNAGG	1 cut(s)	1254
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	3 cut(s)	215, 1004, 1075
BstMAI	GTCTC	2 cut(s)	138, 439
BstMBI	GATC	3 cut(s)	212, 1001, 1072
BstMWI	GCNNNNNNNGC	1 cut(s)	167
BstNI	CCWGG	2 cut(s)	369, 576
BstNSI	RCATGY	1 cut(s)	924
BstSCI	CCNGG	2 cut(s)	367, 574
BstSFI	CTRYAG	2 cut(s)	463, 1116
BstSLI	GKGCMC	1 cut(s)	1349
BstV1I	GCAGC	2 cut(s)	96, 1209
BstX2I	RGATCY	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	1284
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	3 cut(s)	358, 372, 427
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	1308
BveI	ACCTGC	2 cut(s)	733, 821
Cac8I	GCNNGC	3 cut(s)	267, 542, 1195
CaiI	CAGNNNCTG	2 cut(s)	170, 1010
CciI	TCATGA	1 cut(s)	612
Cfr13I	GGNCC	4 cut(s)	356, 413, 578, 869
Csp6I	GTAC	6 cut(s)	26, 96, 492, 1078, 1141, 1158
CviQI	GTAC	6 cut(s)	26, 96, 492, 1078, 1141, 1158
DdeI	CTNAG	2 cut(s)	626, 731
DpnI	GATC	3 cut(s)	214, 1003, 1074
DpnII	GATC	3 cut(s)	212, 1001, 1072
EaeI	YGGCCR	1 cut(s)	425
Ecl136II	GAGCTC	1 cut(s)	618
Eco130I	CCWWGG	1 cut(s)	1255
Eco24I	GRGCYC	1 cut(s)	620
Eco47I	GGWCC	3 cut(s)	413, 578, 869
Eco53kI	GAGCTC	1 cut(s)	618
Eco57I	CTGAAG	2 cut(s)	312, 1254
Eco88I	CYCGRG	1 cut(s)	915
EcoICRI	GAGCTC	1 cut(s)	618
EcoNI	CCTNNNNNAGG	1 cut(s)	1254
EcoRI	GAATTC	2 cut(s)	750, 903
EcoRII	CCWGG	2 cut(s)	367, 574
EcoT14I	CCWWGG	1 cut(s)	1255
EcoT22I	ATGCAT	1 cut(s)	1188
EcoT38I	GRGCYC	1 cut(s)	620
ErhI	CCWWGG	1 cut(s)	1255
FaqI	GGGAC	3 cut(s)	287, 406, 720
FauNDI	CATATG	2 cut(s)	1162, 1294
FblI	GTMKAC	2 cut(s)	341, 696
Fnu4HI	GCNGC	3 cut(s)	85, 545, 1198
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	620
Fsp4HI	GCNGC	3 cut(s)	85, 545, 1198
GluI	GCNGC	3 cut(s)	85, 545, 1198
GsuI	CTGGAG	2 cut(s)	1306, 1335
HaeIII	GGCC	3 cut(s)	358, 372, 427
HapII	CCGG	2 cut(s)	158, 673
HinfI	GANTC	8 cut(s)	296, 419, 468, 639, 704, 947, 981, 1202
HpaII	CCGG	2 cut(s)	158, 673
HphI	GGTGA	2 cut(s)	818, 1081
Hpy166II	GTNNAC	4 cut(s)	342, 365, 697, 1123
Hpy188I	TCNGA	7 cut(s)	75, 129, 301, 627, 967, 1132, 1234
Hpy188III	TCNNGA	5 cut(s)	135, 613, 915, 1017, 1352
Hpy8I	GTNNAC	4 cut(s)	342, 365, 697, 1123
HpyAV	CCTTC	3 cut(s)	98, 162, 542
HpyCH4III	ACNGT	5 cut(s)	339, 686, 940, 1051, 1303
HpyCH4IV	ACGT	1 cut(s)	693
HpyF10VI	GCNNNNNNNGC	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	626, 731
HpySE526I	ACGT	1 cut(s)	693
Kzo9I	GATC	3 cut(s)	212, 1001, 1072
LmnI	GCTCC	1 cut(s)	827
Lsp1109I	GCAGC	2 cut(s)	96, 1209
LweI	GCATC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	2 cut(s)	238, 1021
MalI	GATC	3 cut(s)	214, 1003, 1074
MboI	GATC	3 cut(s)	212, 1001, 1072
MboII	GAAGA	3 cut(s)	40, 55, 305
MfeI	CAATTG	1 cut(s)	822
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	620, 1349
MlsI	TGGCCA	1 cut(s)	427
MluNI	TGGCCA	1 cut(s)	427
MlyI	GAGTC	3 cut(s)	633, 941, 1196
MnlI	CCTC	6 cut(s)	81, 160, 383, 506, 1097, 1123
Mox20I	TGGCCA	1 cut(s)	427
Mph1103I	ATGCAT	1 cut(s)	1188
MroXI	GAANNNNTTC	1 cut(s)	1245
MscI	TGGCCA	1 cut(s)	427
MseI	TTAA	4 cut(s)	648, 711, 942, 1387
MslI	CAYNNNNRTG	1 cut(s)	1040
Msp20I	TGGCCA	1 cut(s)	427
MspI	CCGG	2 cut(s)	158, 673
MspR9I	CCNGG	2 cut(s)	369, 576
MunI	CAATTG	1 cut(s)	822
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	2 cut(s)	369, 576
MwoI	GCNNNNNNNGC	1 cut(s)	167
NdeI	CATATG	2 cut(s)	1162, 1294
NdeII	GATC	3 cut(s)	212, 1001, 1072
NlaIV	GGNNCC	3 cut(s)	162, 223, 530
NsiI	ATGCAT	1 cut(s)	1188
NspI	RCATGY	1 cut(s)	924
NspV	TTCGAA	3 cut(s)	929, 979, 1054
PaeR7I	CTCGAG	1 cut(s)	915
PagI	TCATGA	1 cut(s)	612
PaqCI	CACCTGC	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	1 cut(s)	913
PctI	GAATGC	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	1245
PfeI	GAWTC	5 cut(s)	296, 419, 468, 704, 981
PflMI	CCANNNNNTGG	3 cut(s)	410, 878, 1370
PkrI	GCNGC	3 cut(s)	86, 546, 1199
PleI	GAGTC	3 cut(s)	633, 941, 1196
PpsI	GAGTC	3 cut(s)	633, 941, 1196
PsiI	TTATAA	1 cut(s)	840
Psp124BI	GAGCTC	1 cut(s)	620
Psp6I	CCWGG	2 cut(s)	367, 574
PspGI	CCWGG	2 cut(s)	367, 574
PspN4I	GGNNCC	3 cut(s)	162, 223, 530
PspPI	GGNCC	4 cut(s)	356, 413, 578, 869
PstI	CTGCAG	1 cut(s)	1120
PstNI	CAGNNNCTG	2 cut(s)	170, 1010
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	6 cut(s)	27, 97, 493, 1079, 1142, 1159
RsaNI	GTAC	6 cut(s)	26, 96, 492, 1078, 1141, 1158
RseI	CAYNNNNRTG	1 cut(s)	1040
SacI	GAGCTC	1 cut(s)	620
SaqAI	TTAA	4 cut(s)	648, 711, 942, 1387
SatI	GCNGC	3 cut(s)	85, 545, 1198
Sau3AI	GATC	3 cut(s)	212, 1001, 1072
Sau96I	GGNCC	4 cut(s)	356, 413, 578, 869
ScaI	AGTACT	2 cut(s)	97, 1079
SchI	GAGTC	3 cut(s)	633, 941, 1196
ScrFI	CCNGG	2 cut(s)	369, 576
SduI	GDGCHC	2 cut(s)	620, 1349
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	2 cut(s)	463, 1116
Sfr274I	CTCGAG	1 cut(s)	915
SfuI	TTCGAA	3 cut(s)	929, 979, 1054
SinI	GGWCC	3 cut(s)	413, 578, 869
SlaI	CTCGAG	1 cut(s)	915
SmiMI	CAYNNNNRTG	1 cut(s)	1040
SmlI	CTYRAG	1 cut(s)	915
SmoI	CTYRAG	1 cut(s)	915
SsiI	CCGC	1 cut(s)	545
SspI	AATATT	2 cut(s)	348, 859
SstI	GAGCTC	1 cut(s)	620
StyD4I	CCNGG	2 cut(s)	367, 574
StyI	CCWWGG	1 cut(s)	1255
TaaI	ACNGT	5 cut(s)	339, 686, 940, 1051, 1303
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	6 cut(s)	136, 678, 916, 929, 979, 1054
TatI	WGTACW	3 cut(s)	95, 1077, 1140
TauI	GCSGC	1 cut(s)	547
TfiI	GAWTC	5 cut(s)	296, 419, 468, 704, 981
Tru1I	TTAA	4 cut(s)	648, 711, 942, 1387
Tru9I	TTAA	4 cut(s)	648, 711, 942, 1387
TscAI	CASTG	1 cut(s)	1308
TseI	GCWGC	2 cut(s)	84, 1197
TspDTI	ATGAA	5 cut(s)	132, 411, 489, 601, 656
TspRI	CASTG	1 cut(s)	1308
Van91I	CCANNNNNTGG	3 cut(s)	410, 878, 1370
VpaK11BI	GGWCC	3 cut(s)	413, 578, 869
XagI	CCTNNNNNAGG	1 cut(s)	1254
XapI	RAATTY	5 cut(s)	39, 138, 750, 903, 1262
XceI	RCATGY	1 cut(s)	924
XhoI	CTCGAG	1 cut(s)	915
XmiI	GTMKAC	2 cut(s)	341, 696
XmnI	GAANNNNTTC	1 cut(s)	1245
ZrmI	AGTACT	2 cut(s)	97, 1079
Zsp2I	ATGCAT	1 cut(s)	1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.