Rroxscaffold_6G00421410

Glycosyl hydrolases family 28

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015816
Physical Location & Seq
Forward (+)
42577611 .. 42579962
2352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00421410.1

Sequence Viewer

Length: 597 bp
ATGGTAGAGGAGAGAAATGGTGGAATCTTCCTTGCAAACCCCACAAAGGAATCAATGGAAAAACACTGCCTGGACCTTGTGATAGCCCGGCTCATTGGCAGTCTTGGAATTGGCAATTCCCGAGCATGTGTTTCGAATATCACAGTTAGAGATTCGATCATCAAGCACTCTGACAATGGGGTTCGGATCAAAACATGGCAAGGGGGATCAGGATCTGTGTCAAGCATAACATTCCACAACATTCACATGGACACCGTACGAAACCCCATTGTGCTAGACCAATATTACTGCCTCACCAAGCATTGCCCTAACCAAACCTCTGCAGTTCACATATCAAATATCTTGTACACCAACATAAGGGGTACGTATGATGTGCGAAGCCCACCTGTGCATTTCGCTTGCAGTGACTCAATGCCTTGCACAAACCTCACTCTCTCTGAAGTGGAATTGGTCCCTGCTACAAAAGGACGCTTGGTGTCGAGCCCGCTTTGCTGGAGTGCTTATGGAACTATGCAGACAATTACCGTTCCACCAGTTTTGTGCTTGTTAGGGGGCATCCCAGAACTGTTGCCCCAGAATGATAATGATGGGTGTTAA

Protein Analysis

198

Amino Acids

21.55

Weight (kDa)

6.63

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 32 - 152 3.4e-36 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56710
fragaria_vesca FvH4_6g08130
malus_domestica MD04G1189600.v1.1
prunus_persica Prupe.6G307400_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0457981
rosa_laevigata RLG00000025181
rosa_multiflora Rmu_sc0000384.1_g000005
rosa_roxburghii Rroxscaffold_6G00421410
rosa_rugosa Rorug03G0024000
rosa_samantha Rh3AG084600 Rh3BG087300 Rh3CG087800 Rh3DG088100
rosa_wichuraiana Rw0G012380 Rw3G007200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 485
AclWI GGATC 3 cut(s) 194, 214, 220
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 3 cut(s) 258, 347, 364
AfiI CCNNNNNNNGG 2 cut(s) 46, 357
AjnI CCWGG 1 cut(s) 69
AlwI GGATC 3 cut(s) 194, 214, 220
AlwNI CAGNNNCTG 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 120
AspS9I GGNCC 2 cut(s) 73, 451
AsuC2I CCSGG 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 286
AsuII TTCGAA 1 cut(s) 134
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 2 cut(s) 73, 451
BanII GRGCYC 1 cut(s) 485
BccI CCATC 1 cut(s) 581
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BciT130I CCWGG 1 cut(s) 71
BcnI CCSGG 1 cut(s) 88
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 321
Bme1390I CCNGG 2 cut(s) 71, 88
Bme18I GGWCC 2 cut(s) 73, 451
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 2 cut(s) 73, 451
BmiI GGNNCC 1 cut(s) 453
BmrFI CCNGG 2 cut(s) 71, 88
BmsI GCATC 1 cut(s) 564
BpmI CTGGAG 1 cut(s) 514
Bpu14I TTCGAA 1 cut(s) 134
BpuMI CCSGG 1 cut(s) 88
BsaAI YACGTR 1 cut(s) 366
BsaBI GATNNNNATC 1 cut(s) 211
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 357
Bse1I ACTGG 1 cut(s) 533
Bse3DI GCAATG 1 cut(s) 301
Bse8I GATNNNNATC 1 cut(s) 211
BseBI CCWGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 555
BseJI GATNNNNATC 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 46, 357
BseMI GCAATG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 533
BseRI GAGGAG 1 cut(s) 23
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 1 cut(s) 88
BsiWI CGTACG 1 cut(s) 256
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 2 cut(s) 46, 357
BsmFI GGGAC 1 cut(s) 437
BsoBI CYCGRG 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 485
Bsp1407I TGTACA 1 cut(s) 345
Bsp143I GATC 4 cut(s) 156, 186, 206, 212
BspACI CCGC 1 cut(s) 485
BspLI GGNNCC 1 cut(s) 453
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 3 cut(s) 194, 214, 220
BspT104I TTCGAA 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 301
BsrGI TGTACA 1 cut(s) 345
BsrI ACTGG 1 cut(s) 533
BssMI GATC 4 cut(s) 156, 186, 206, 212
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 4 cut(s) 145, 256, 526, 567
BstAUI TGTACA 1 cut(s) 345
BstBAI YACGTR 1 cut(s) 366
BstBI TTCGAA 1 cut(s) 134
BstC8I GCNNGC 2 cut(s) 400, 485
BstF5I GGATG 1 cut(s) 555
BstKTI GATC 4 cut(s) 159, 189, 209, 215
BstMBI GATC 4 cut(s) 156, 186, 206, 212
BstMWI GCNNNNNNNGC 1 cut(s) 489
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 69, 86
BstSFI CTRYAG 1 cut(s) 321
BstSNI TACGTA 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BtsCI GGATG 1 cut(s) 555
BtsI GCAGTG 2 cut(s) 64, 409
BtsIMutI CAGTG 2 cut(s) 64, 409
Cac8I GCNNGC 2 cut(s) 400, 485
CaiI CAGNNNCTG 1 cut(s) 215
Cfr13I GGNCC 2 cut(s) 73, 451
CseI GACGC 1 cut(s) 477
Csp6I GTAC 3 cut(s) 257, 346, 363
CspCI CAANNNNNGTGG 2 cut(s) 519, 554
CviAII CATG 3 cut(s) 126, 195, 247
CviJI RGCY 4 cut(s) 86, 91, 381, 483
CviKI_1 RGCY 4 cut(s) 86, 91, 381, 483
CviQI GTAC 3 cut(s) 257, 346, 363
DpnI GATC 4 cut(s) 158, 188, 208, 214
DpnII GATC 4 cut(s) 156, 186, 206, 212
Eco105I TACGTA 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 485
Eco47I GGWCC 2 cut(s) 73, 451
Eco57I CTGAAG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 120
EcoRII CCWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 485
FaeI CATG 3 cut(s) 129, 198, 250
FaiI YATR 9 cut(s) 127, 196, 227, 248, 332, 356, 369, 504, 512
FaqI GGGAC 1 cut(s) 437
FatI CATG 3 cut(s) 125, 194, 246
FauI CCCGC 1 cut(s) 492
FokI GGATG 1 cut(s) 542
FriOI GRGCYC 1 cut(s) 485
FspBI CTAG 1 cut(s) 275
GsuI CTGGAG 1 cut(s) 514
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 477
Hin1II CATG 3 cut(s) 129, 198, 250
HinfI GANTC 4 cut(s) 24, 50, 152, 407
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 328, 348
Hpy188I TCNGA 3 cut(s) 172, 186, 439
Hpy188III TCNNGA 2 cut(s) 120, 210
Hpy8I GTNNAC 2 cut(s) 328, 348
HpyCH4III ACNGT 4 cut(s) 145, 256, 526, 567
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 6 cut(s) 35, 323, 391, 402, 420, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 489
HpySE526I ACGT 1 cut(s) 365
Hsp92II CATG 3 cut(s) 129, 198, 250
Kzo9I GATC 4 cut(s) 156, 186, 206, 212
LweI GCATC 1 cut(s) 564
MaeI CTAG 1 cut(s) 275
MaeII ACGT 1 cut(s) 365
MaeIII GTNAC 1 cut(s) 404
MalI GATC 4 cut(s) 158, 188, 208, 214
MboI GATC 4 cut(s) 156, 186, 206, 212
MboII GAAGA 1 cut(s) 19
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 485
MluCI AATT 4 cut(s) 108, 115, 446, 519
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 3 cut(s) 302, 328, 437
MseI TTAA 1 cut(s) 595
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 2 cut(s) 71, 88
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 489
NciI CCSGG 1 cut(s) 88
NdeII GATC 4 cut(s) 156, 186, 206, 212
NlaIII CATG 3 cut(s) 129, 198, 250
NlaIV GGNNCC 1 cut(s) 453
NmuCI GTSAC 1 cut(s) 404
NspI RCATGY 1 cut(s) 129
NspV TTCGAA 1 cut(s) 134
PfeI GAWTC 3 cut(s) 24, 50, 152
Pfl23II CGTACG 1 cut(s) 256
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
Ppu21I YACGTR 1 cut(s) 366
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspLI CGTACG 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 453
PspPI GGNCC 2 cut(s) 73, 451
PstI CTGCAG 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 215
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 3 cut(s) 258, 347, 364
RsaNI GTAC 3 cut(s) 257, 346, 363
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 1 cut(s) 595
Sau3AI GATC 4 cut(s) 156, 186, 206, 212
Sau96I GGNCC 2 cut(s) 73, 451
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 2 cut(s) 71, 88
SduI GDGCHC 1 cut(s) 485
SetI ASST 5 cut(s) 78, 320, 368, 388, 429
SfaNI GCATC 1 cut(s) 564
SfcI CTRYAG 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 134
SinI GGWCC 2 cut(s) 73, 451
SmiMI CAYNNNNRTG 1 cut(s) 245
SnaBI TACGTA 1 cut(s) 366
Sse9I AATT 4 cut(s) 108, 115, 446, 519
SsiI CCGC 1 cut(s) 485
SspI AATATT 1 cut(s) 284
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 2 cut(s) 69, 86
TaaI ACNGT 4 cut(s) 145, 256, 526, 567
TaiI ACGT 1 cut(s) 368
TaqI TCGA 3 cut(s) 134, 155, 479
TasI AATT 4 cut(s) 108, 115, 446, 519
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 3 cut(s) 24, 50, 152
Tru1I TTAA 1 cut(s) 595
Tru9I TTAA 1 cut(s) 595
TscAI CASTG 2 cut(s) 71, 409
TseFI GTSAC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 404
TspRI CASTG 2 cut(s) 71, 409
VpaK11BI GGWCC 2 cut(s) 73, 451
XceI RCATGY 1 cut(s) 129
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.