Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000384.1

Orthogroup ID

OG0015816

Physical Location & Seq

Genomic Coordinates Reverse (-)

15841 .. 18709

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000384.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

atgccagtgctcgcatgcattctctcagcaaaagaagccaaagccatcgctctaaatggaggtggtcgacttcactacacttcttcgctttcactgtctcaaatttcagtgcctccttctcctgcacccacggctgccgttatcccgagttacaatggtagttctgctcttggtaccactgttttcaatgtgagaacttttggtgcagttggggatggtgttactgatgatacaaaagcatttaaaatggcttgggacagtgcttgtcaaactgaagattcggaagttcttgttccaaaagggcattcctttatgttacagtctacaatattcacagggccgtgtaaatctggcctcaaattgcaggttgaaatgtattcgattgatgggacattagtgccgccaaatggaccggattcatggccgaaaaatattagtaagagacagtggttggttttctacagaatcaatggaatgtcaatgcaaggaggtggtgtaatagatggtagaggagagaaatggtggaatcttccttgcaaaccccacaaaggaatcaatggaacaacaatgcctggaccttgtgatagcccggctgctgtaaggttcttcatgtgctcaaatctgaaactgcaaggactcaaaatcaagaatagcccccagtttcactgcaagtttgataattgtcaaaacgttttcatagaatcacttaccataaattcacctgctctaagtcccaacacagacggaattcacatacagaacacaaataatgtgaaaatatacaattcactcgtatccaatggtgatgattgtgtatcaattgggactggttcttataatatggaaattaggaatattacttgcggtccaagtcatggaataagcattggcagtcttggaattggcaattcccgagcatgtgtttcgaatatcacagttagagactcgatcatcaagcactctgacaatggggttcggatcaaaacatggcaagggggatcaggatctgtgtcgagcataacattccacaacattcacatggacaccgtacgaaaccccattgtgctagaccaatattactgcctcaccaagcattgccctaaccaaacctctgcagttcacatatcaaatatcttgttcaccaacataaggggtacttatgatgtgcgaagcccgcctatgcatttcgcttgcagtgactcaatgccttgcacaaacctcactctctctgaagtggaattgctccctgctacaaaaggacgcttggtgtcgagcccgctttgctggagtgcttatggaactatgcagacaattaccgttccaccagttttgtgcttgttagggggcatcccggaactgttgccccagaatgataatgatgggtgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004650 GO:0005575 GO:0005618 GO:0005623 GO:0008150 GO:0009664 GO:0009825 GO:0009827 GO:0009831 GO:0009987 GO:0016043 GO:0016049 GO:0016787 GO:0016798 GO:0030312 GO:0040007 GO:0042545 GO:0042547 GO:0044464 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28 Pectate_lyase_3

Protein Analysis

462

Amino Acids

49.66

Weight (kDa)

8.23

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56710
fragaria_vesca	FvH4_6g08130
malus_domestica	MD04G1189600.v1.1
prunus_persica	Prupe.6G307400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0457981
rosa_laevigata	RLG00000025181
rosa_multiflora	Rmu_sc0000384.1_g000005
rosa_roxburghii	Rroxscaffold_6G00421410
rosa_rugosa	Rorug03G0024000
rosa_samantha	Rh3AG084600 Rh3BG087300 Rh3CG087800 Rh3DG088100
rosa_wichuraiana	Rw0G012380 Rw3G007200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	837
AarI	CACCTGC	1 cut(s)	730
Acc36I	ACCTGC	2 cut(s)	355, 730
Acc65I	GGTACC	1 cut(s)	173
AccB1I	GGYRCC	1 cut(s)	173
AccB7I	CCANNNNNTGG	1 cut(s)	875
AccI	GTMKAC	2 cut(s)	67, 323
AciI	CCGC	4 cut(s)	401, 864, 1175, 1277
AclI	AACGTT	1 cut(s)	690
AclWI	GGATC	3 cut(s)	986, 1006, 1012
AcoI	YGGCCR	1 cut(s)	422
AcsI	RAATTY	3 cut(s)	102, 715, 747
AcuI	CTGAAG	2 cut(s)	294, 1251
AfaI	GTAC	3 cut(s)	175, 1050, 1156
AfiI	CCNNNNNNNGG	4 cut(s)	407, 548, 875, 1149
AgsI	TTSAA	2 cut(s)	187, 371
AjnI	CCWGG	1 cut(s)	571
AjuI	GAANNNNNNNTTGG	2 cut(s)	289, 321
Alw21I	GWGCWC	2 cut(s)	12, 617
Alw26I	GTCTC	3 cut(s)	102, 436, 936
AlwI	GGATC	3 cut(s)	986, 1006, 1012
AlwNI	CAGNNNCTG	1 cut(s)	1007
Ama87I	CYCGRG	2 cut(s)	145, 912
AoxI	GGCC	3 cut(s)	338, 352, 422
ApeKI	GCWGC	2 cut(s)	134, 593
ApoI	RAATTY	3 cut(s)	102, 715, 747
Asp718I	GGTACC	1 cut(s)	173
AspS9I	GGNCC	4 cut(s)	338, 410, 575, 866
AsuC2I	CCSGG	2 cut(s)	590, 1352
AsuHPI	GGTGA	4 cut(s)	711, 815, 1078, 1132
AsuII	TTCGAA	1 cut(s)	926
AvaI	CYCGRG	2 cut(s)	145, 912
AvaII	GGWCC	3 cut(s)	410, 575, 866
BaeI	ACNNNNGTAYC	2 cut(s)	165, 198
BanI	GGYRCC	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	1277
Bbv12I	GWGCWC	2 cut(s)	12, 617
BbvI	GCAGC	2 cut(s)	121, 580
BccI	CCATC	5 cut(s)	53, 209, 380, 497, 1373
BceAI	ACGGC	3 cut(s)	122, 147, 325
BcgI	CGANNNNNNTGC	2 cut(s)	906, 940
BciT130I	CCWGG	1 cut(s)	573
BciVI	GTATCC	1 cut(s)	805
BcnI	CCSGG	2 cut(s)	590, 1352
BcoDI	GTCTC	3 cut(s)	102, 436, 936
BfaI	CTAG	1 cut(s)	1067
BfmI	CTRYAG	2 cut(s)	460, 1113
BfuAI	ACCTGC	2 cut(s)	355, 730
BfuI	GTATCC	1 cut(s)	805
BisI	GCNGC	3 cut(s)	135, 401, 594
BlsI	GCNGC	3 cut(s)	136, 402, 595
Bme1390I	CCNGG	3 cut(s)	573, 590, 1352
Bme18I	GGWCC	3 cut(s)	410, 575, 866
BmeT110I	CYCGRG	2 cut(s)	145, 912
BmgT120I	GGNCC	4 cut(s)	338, 410, 575, 866
BmiI	GGNNCC	1 cut(s)	175
BmrFI	CCNGG	3 cut(s)	573, 590, 1352
BmrI	ACTGGG	1 cut(s)	652
BmsI	GCATC	1 cut(s)	1356
BmuI	ACTGGG	1 cut(s)	652
BpmI	CTGGAG	1 cut(s)	1306
Bpu14I	TTCGAA	1 cut(s)	926
BpuMI	CCSGG	2 cut(s)	590, 1352
BsaBI	GATNNNNATC	1 cut(s)	1003
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	4 cut(s)	407, 548, 875, 1149
Bse1I	ACTGG	4 cut(s)	5, 658, 832, 1325
Bse3DI	GCAATG	1 cut(s)	1093
Bse8I	GATNNNNATC	1 cut(s)	1003
BseBI	CCWGG	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	220, 1347
BseJI	GATNNNNATC	1 cut(s)	1003
BseLI	CCNNNNNNNGG	4 cut(s)	407, 548, 875, 1149
BseMI	GCAATG	1 cut(s)	1093
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	4 cut(s)	5, 658, 832, 1325
BseRI	GAGGAG	1 cut(s)	525
BseXI	GCAGC	2 cut(s)	121, 580
BsgI	GTGCAG	2 cut(s)	108, 225
BshFI	GGCC	3 cut(s)	340, 354, 424
BshNI	GGYRCC	1 cut(s)	173
BsiHKAI	GWGCWC	2 cut(s)	12, 617
BsiHKCI	CYCGRG	2 cut(s)	145, 912
BsiSI	CCGG	3 cut(s)	413, 590, 1352
BsiWI	CGTACG	1 cut(s)	1048
BslFI	GGGAC	4 cut(s)	269, 403, 717, 838
BslI	CCNNNNNNNGG	4 cut(s)	407, 548, 875, 1149
BsmAI	GTCTC	3 cut(s)	102, 436, 936
BsmFI	GGGAC	4 cut(s)	269, 403, 717, 838
BsmI	GAATGC	2 cut(s)	18, 304
BsnI	GGCC	3 cut(s)	340, 354, 424
BsoBI	CYCGRG	2 cut(s)	145, 912
Bsp119I	TTCGAA	1 cut(s)	926
Bsp1286I	GDGCHC	3 cut(s)	12, 617, 1277
Bsp143I	GATC	4 cut(s)	948, 978, 998, 1004
BspACI	CCGC	4 cut(s)	401, 864, 1175, 1277
BspANI	GGCC	3 cut(s)	340, 354, 424
BspCNI	CTCAG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	175
BspMAI	CTGCAG	1 cut(s)	1117
BspMI	ACCTGC	2 cut(s)	355, 730
BspPI	GGATC	3 cut(s)	986, 1006, 1012
BspT104I	TTCGAA	1 cut(s)	926
BspT107I	GGYRCC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	1093
BsrI	ACTGG	4 cut(s)	5, 658, 832, 1325
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	4 cut(s)	948, 978, 998, 1004
Bst2UI	CCWGG	1 cut(s)	573
Bst4CI	ACNGT	9 cut(s)	96, 181, 260, 321, 447, 937, 1048, 1318, 1359
BstBI	TTCGAA	1 cut(s)	926
BstC8I	GCNNGC	5 cut(s)	12, 16, 1175, 1192, 1277
BstDEI	CTNAG	2 cut(s)	25, 728
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	220, 1347
BstKTI	GATC	4 cut(s)	951, 981, 1001, 1007
BstMAI	GTCTC	3 cut(s)	102, 436, 936
BstMBI	GATC	4 cut(s)	948, 978, 998, 1004
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 131, 1174, 1281
BstNI	CCWGG	1 cut(s)	573
BstNSI	RCATGY	2 cut(s)	18, 921
BstSCI	CCNGG	3 cut(s)	571, 588, 1350
BstSFI	CTRYAG	2 cut(s)	460, 1113
BstV1I	GCAGC	2 cut(s)	121, 580
BstX2I	RGATCY	1 cut(s)	1004
BstYI	RGATCY	1 cut(s)	1004
BsuI	GTATCC	1 cut(s)	805
BsuRI	GGCC	3 cut(s)	340, 354, 424
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	220, 1347
BtsI	GCAGTG	2 cut(s)	664, 1201
BtsIMutI	CAGTG	8 cut(s)	12, 92, 114, 177, 265, 452, 664, 1201
BveI	ACCTGC	2 cut(s)	355, 730
Cac8I	GCNNGC	5 cut(s)	12, 16, 1175, 1192, 1277
CaiI	CAGNNNCTG	1 cut(s)	1007
Cfr13I	GGNCC	4 cut(s)	338, 410, 575, 866
CseI	GACGC	1 cut(s)	1269
Csp6I	GTAC	3 cut(s)	174, 1049, 1155
CspCI	CAANNNNNGTGG	2 cut(s)	1311, 1346
CviAII	CATG	7 cut(s)	15, 420, 610, 875, 918, 987, 1039
CviQI	GTAC	3 cut(s)	174, 1049, 1155
DdeI	CTNAG	2 cut(s)	25, 728
DpnI	GATC	4 cut(s)	950, 980, 1000, 1006
DpnII	GATC	4 cut(s)	948, 978, 998, 1004
DraI	TTTAAA	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	1277
Eco47I	GGWCC	3 cut(s)	410, 575, 866
Eco57I	CTGAAG	2 cut(s)	294, 1251
Eco88I	CYCGRG	2 cut(s)	145, 912
EcoRI	GAATTC	1 cut(s)	747
EcoRII	CCWGG	1 cut(s)	571
EcoT22I	ATGCAT	2 cut(s)	20, 1185
EcoT38I	GRGCYC	1 cut(s)	1277
FaeI	CATG	7 cut(s)	18, 423, 613, 878, 921, 990, 1042
FalI	AAGNNNNNCTT	2 cut(s)	1141, 1173
FaqI	GGGAC	4 cut(s)	269, 403, 717, 838
FatI	CATG	7 cut(s)	14, 419, 609, 874, 917, 986, 1038
FauI	CCCGC	2 cut(s)	1182, 1284
FblI	GTMKAC	2 cut(s)	67, 323
Fnu4HI	GCNGC	3 cut(s)	135, 401, 594
FokI	GGATG	2 cut(s)	227, 1334
FriOI	GRGCYC	1 cut(s)	1277
Fsp4HI	GCNGC	3 cut(s)	135, 401, 594
FspBI	CTAG	1 cut(s)	1067
GluI	GCNGC	3 cut(s)	135, 401, 594
GsuI	CTGGAG	1 cut(s)	1306
HaeIII	GGCC	3 cut(s)	340, 354, 424
HapII	CCGG	3 cut(s)	413, 590, 1352
HgaI	GACGC	1 cut(s)	1269
Hin1II	CATG	7 cut(s)	18, 423, 613, 878, 921, 990, 1042
HincII	GTYRAC	1 cut(s)	68
HindII	GTYRAC	1 cut(s)	68
HinfI	GANTC	9 cut(s)	278, 416, 465, 526, 552, 636, 701, 944, 1199
HpaII	CCGG	3 cut(s)	413, 590, 1352
HphI	GGTGA	4 cut(s)	711, 815, 1078, 1132
Hpy166II	GTNNAC	4 cut(s)	68, 324, 1120, 1140
Hpy188I	TCNGA	5 cut(s)	283, 624, 964, 978, 1231
Hpy188III	TCNNGA	4 cut(s)	145, 646, 912, 1002
Hpy8I	GTNNAC	4 cut(s)	68, 324, 1120, 1140
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	9 cut(s)	96, 181, 260, 321, 447, 937, 1048, 1318, 1359
HpyCH4IV	ACGT	1 cut(s)	690
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 131, 1174, 1281
HpyF3I	CTNAG	2 cut(s)	25, 728
HpySE526I	ACGT	1 cut(s)	690
Hsp92II	CATG	7 cut(s)	18, 423, 613, 878, 921, 990, 1042
KpnI	GGTACC	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	948, 978, 998, 1004
LmnI	GCTCC	1 cut(s)	1248
Lsp1109I	GCAGC	2 cut(s)	121, 580
LweI	GCATC	1 cut(s)	1356
MaeI	CTAG	1 cut(s)	1067
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	4 cut(s)	149, 220, 315, 1196
MalI	GATC	4 cut(s)	950, 980, 1000, 1006
MboI	GATC	4 cut(s)	948, 978, 998, 1004
MboII	GAAGA	4 cut(s)	75, 287, 521, 598
MfeI	CAATTG	1 cut(s)	819
MflI	RGATCY	1 cut(s)	1004
MhlI	GDGCHC	3 cut(s)	12, 617, 1277
MlyI	GAGTC	3 cut(s)	630, 938, 1193
MnlI	CCTC	8 cut(s)	53, 123, 365, 482, 503, 1094, 1120, 1229
Mph1103I	ATGCAT	2 cut(s)	20, 1185
MseI	TTAA	2 cut(s)	243, 1387
MslI	CAYNNNNRTG	1 cut(s)	1037
MspI	CCGG	3 cut(s)	413, 590, 1352
MspR9I	CCNGG	3 cut(s)	573, 590, 1352
MunI	CAATTG	1 cut(s)	819
Mva1269I	GAATGC	2 cut(s)	18, 304
MvaI	CCWGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	4 cut(s)	35, 131, 1174, 1281
NciI	CCSGG	2 cut(s)	590, 1352
NdeII	GATC	4 cut(s)	948, 978, 998, 1004
NlaIII	CATG	7 cut(s)	18, 423, 613, 878, 921, 990, 1042
NlaIV	GGNNCC	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	1196
NsiI	ATGCAT	2 cut(s)	20, 1185
NspI	RCATGY	2 cut(s)	18, 921
NspV	TTCGAA	1 cut(s)	926
PaeI	GCATGC	1 cut(s)	18
PaqCI	CACCTGC	1 cut(s)	730
PctI	GAATGC	2 cut(s)	18, 304
PfeI	GAWTC	6 cut(s)	278, 416, 465, 526, 552, 701
Pfl23II	CGTACG	1 cut(s)	1048
PflMI	CCANNNNNTGG	1 cut(s)	875
PfoI	TCCNGGA	1 cut(s)	1350
PkrI	GCNGC	3 cut(s)	136, 402, 595
PleI	GAGTC	3 cut(s)	630, 938, 1193
PpsI	GAGTC	3 cut(s)	630, 938, 1193
PsiI	TTATAA	1 cut(s)	837
Psp1406I	AACGTT	1 cut(s)	690
Psp6I	CCWGG	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	571
PspLI	CGTACG	1 cut(s)	1048
PspN4I	GGNNCC	1 cut(s)	175
PspPI	GGNCC	4 cut(s)	338, 410, 575, 866
PstI	CTGCAG	1 cut(s)	1117
PstNI	CAGNNNCTG	1 cut(s)	1007
PsuI	RGATCY	1 cut(s)	1004
RsaI	GTAC	3 cut(s)	175, 1050, 1156
RsaNI	GTAC	3 cut(s)	174, 1049, 1155
RseI	CAYNNNNRTG	1 cut(s)	1037
SalI	GTCGAC	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	243, 1387
SatI	GCNGC	3 cut(s)	135, 401, 594
Sau3AI	GATC	4 cut(s)	948, 978, 998, 1004
Sau96I	GGNCC	4 cut(s)	338, 410, 575, 866
SchI	GAGTC	3 cut(s)	630, 938, 1193
ScrFI	CCNGG	3 cut(s)	573, 590, 1352
SduI	GDGCHC	3 cut(s)	12, 617, 1277
SetI	ASST	9 cut(s)	64, 369, 493, 580, 605, 693, 724, 1112, 1221
SfaNI	GCATC	1 cut(s)	1356
SfcI	CTRYAG	2 cut(s)	460, 1113
SfuI	TTCGAA	1 cut(s)	926
SinI	GGWCC	3 cut(s)	410, 575, 866
SmiMI	CAYNNNNRTG	1 cut(s)	1037
SphI	GCATGC	1 cut(s)	18
SsiI	CCGC	4 cut(s)	401, 864, 1175, 1277
SspI	AATATT	4 cut(s)	330, 433, 856, 1076
SspMI	CTAG	1 cut(s)	1067
StyD4I	CCNGG	3 cut(s)	571, 588, 1350
TaaI	ACNGT	9 cut(s)	96, 181, 260, 321, 447, 937, 1048, 1318, 1359
TaiI	ACGT	1 cut(s)	693
TaqI	TCGA	6 cut(s)	67, 380, 926, 947, 1013, 1271
TauI	GCSGC	1 cut(s)	403
TfiI	GAWTC	6 cut(s)	278, 416, 465, 526, 552, 701
Tru1I	TTAA	2 cut(s)	243, 1387
Tru9I	TTAA	2 cut(s)	243, 1387
TscAI	CASTG	8 cut(s)	12, 99, 114, 184, 265, 452, 671, 1201
TseFI	GTSAC	1 cut(s)	1196
TseI	GCWGC	2 cut(s)	134, 593
Tsp45I	GTSAC	1 cut(s)	1196
TspDTI	ATGAA	3 cut(s)	408, 598, 685
TspGWI	ACGGA	1 cut(s)	759
TspRI	CASTG	8 cut(s)	12, 99, 114, 184, 265, 452, 671, 1201
Van91I	CCANNNNNTGG	1 cut(s)	875
VpaK11BI	GGWCC	3 cut(s)	410, 575, 866
XapI	RAATTY	3 cut(s)	102, 715, 747
XceI	RCATGY	2 cut(s)	18, 921
XmiI	GTMKAC	2 cut(s)	67, 323
XspI	CTAG	1 cut(s)	1067
Zsp2I	ATGCAT	2 cut(s)	20, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.