PWWP domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05430 AT3G05430 AT5G27650 |
| fragaria_vesca | FvH4_6g06310 FvH4_6g06310 |
| malus_domestica | MD12G1216400.v1.1 |
| prunus_persica | Prupe.6G322700_v2.0.a1 |
| pyrus_communis | pycom04g17860 pycom12g20190 |
| rosa_chinensis | RchiOBHm_Chr3g0455351 |
| rosa_laevigata | RLG00000025367 |
| rosa_multiflora | Rmu_sc0002169.1_g000047 Rmu_sc0024960.1_g000002 Rmu_sc0034256.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00424340 |
| rosa_rugosa | Rorug03G0006700 |
| rosa_samantha | Rh3AG066300 Rh3BG068600 Rh3CG067000 Rh3DG068400 |
| rosa_wichuraiana | Rw3G005230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 780 |
| Acc16I | TGCGCA | 1 cut(s) | 1943 |
| Acc36I | ACCTGC | 3 cut(s) | 780, 2084, 3151 |
| AccB1I | GGYRCC | 3 cut(s) | 35, 2949, 3511 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1337 |
| AccI | GTMKAC | 1 cut(s) | 2331 |
| AccII | CGCG | 2 cut(s) | 1827, 3022 |
| AccIII | TCCGGA | 2 cut(s) | 142, 220 |
| AclI | AACGTT | 1 cut(s) | 2585 |
| AclWI | GGATC | 9 cut(s) | 698, 1239, 1357, 1759, 1841, 2252, 2481, 2826, 3010 |
| AcoI | YGGCCR | 3 cut(s) | 569, 975, 1453 |
| AcsI | RAATTY | 8 cut(s) | 273, 368, 1762, 2080, 2180, 2955, 3209, 3485 |
| AcuI | CTGAAG | 6 cut(s) | 1968, 1999, 2025, 2807, 2997, 3149 |
| AcvI | CACGTG | 1 cut(s) | 3203 |
| AdeI | CACNNNGTG | 2 cut(s) | 992, 3104 |
| AfaI | GTAC | 9 cut(s) | 860, 1383, 1618, 1666, 1678, 2052, 2658, 3244, 3659 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 1163, 1337, 2267, 2508, 2990, 3440 |
| AflIII | ACRYGT | 1 cut(s) | 3202 |
| AgeI | ACCGGT | 2 cut(s) | 432, 3170 |
| AhlI | ACTAGT | 1 cut(s) | 1126 |
| AjnI | CCWGG | 4 cut(s) | 1305, 2118, 2196, 2683 |
| AleI | CACNNNNGTG | 1 cut(s) | 848 |
| Alw21I | GWGCWC | 4 cut(s) | 142, 432, 1156, 3565 |
| Alw26I | GTCTC | 5 cut(s) | 609, 1070, 1408, 2360, 2834 |
| Alw44I | GTGCAC | 1 cut(s) | 3561 |
| AlwI | GGATC | 9 cut(s) | 698, 1239, 1357, 1759, 1841, 2252, 2481, 2826, 3010 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2708 |
| Ama87I | CYCGRG | 3 cut(s) | 165, 1149, 1416 |
| Aor13HI | TCCGGA | 2 cut(s) | 142, 220 |
| AoxI | GGCC | 9 cut(s) | 569, 840, 975, 1309, 1453, 2194, 2604, 2640, 2810 |
| ApaLI | GTGCAC | 1 cut(s) | 3561 |
| ApeKI | GCWGC | 8 cut(s) | 2468, 2549, 2591, 2894, 3079, 3082, 3323, 3326 |
| ApoI | RAATTY | 8 cut(s) | 273, 368, 1762, 2080, 2180, 2955, 3209, 3485 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 616, 648 |
| AsiGI | ACCGGT | 2 cut(s) | 432, 3170 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1764, 2182 |
| AspLEI | GCGC | 2 cut(s) | 615, 1944 |
| AsuC2I | CCSGG | 4 cut(s) | 573, 839, 891, 2861 |
| AsuII | TTCGAA | 2 cut(s) | 15, 522 |
| AvaI | CYCGRG | 3 cut(s) | 165, 1149, 1416 |
| AvaII | GGWCC | 8 cut(s) | 744, 1141, 1166, 1653, 2322, 2559, 2972, 3443 |
| AxyI | CCTNAGG | 1 cut(s) | 2059 |
| BaeGI | GKGCMC | 3 cut(s) | 508, 2524, 3565 |
| BanI | GGYRCC | 3 cut(s) | 35, 2949, 3511 |
| BanII | GRGCYC | 6 cut(s) | 142, 269, 1156, 1396, 1594, 2730 |
| BbrPI | CACGTG | 1 cut(s) | 3203 |
| BbsI | GAAGAC | 1 cut(s) | 1956 |
| Bbv12I | GWGCWC | 4 cut(s) | 142, 432, 1156, 3565 |
| BbvCI | CCTCAGC | 3 cut(s) | 1182, 1324, 1704 |
| BbvI | GCAGC | 8 cut(s) | 2480, 2561, 2578, 2906, 3091, 3094, 3310, 3313 |
| BceAI | ACGGC | 3 cut(s) | 962, 1940, 3640 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 65, 99, 578, 582, 612, 616, 3601, 3635 |
| BciT130I | CCWGG | 4 cut(s) | 1307, 2120, 2198, 2685 |
| BclI | TGATCA | 3 cut(s) | 313, 997, 3247 |
| BcnI | CCSGG | 4 cut(s) | 573, 839, 891, 2861 |
| BcoDI | GTCTC | 5 cut(s) | 609, 1070, 1408, 2360, 2834 |
| BcuI | ACTAGT | 1 cut(s) | 1126 |
| BfmI | CTRYAG | 5 cut(s) | 42, 728, 1464, 1595, 2592 |
| BfuAI | ACCTGC | 3 cut(s) | 780, 2084, 3151 |
| BglII | AGATCT | 2 cut(s) | 185, 951 |
| BisI | GCNGC | 9 cut(s) | 1456, 2469, 2550, 2592, 2895, 3080, 3083, 3324, 3327 |
| BlpI | GCTNAGC | 2 cut(s) | 687, 3593 |
| BlsI | GCNGC | 9 cut(s) | 1457, 2470, 2551, 2593, 2896, 3081, 3084, 3325, 3328 |
| BmcAI | AGTACT | 1 cut(s) | 3244 |
| Bme1390I | CCNGG | 8 cut(s) | 573, 839, 891, 1307, 2120, 2198, 2685, 2861 |
| Bme18I | GGWCC | 8 cut(s) | 744, 1141, 1166, 1653, 2322, 2559, 2972, 3443 |
| BmeT110I | CYCGRG | 3 cut(s) | 165, 1149, 1416 |
| BmiI | GGNNCC | 9 cut(s) | 37, 1143, 1395, 1422, 1654, 2103, 2324, 2951, 3513 |
| BmrFI | CCNGG | 8 cut(s) | 573, 839, 891, 1307, 2120, 2198, 2685, 2861 |
| BmrI | ACTGGG | 3 cut(s) | 1130, 1272, 3003 |
| BmsI | GCATC | 9 cut(s) | 394, 608, 1111, 1549, 2080, 2720, 2875, 3071, 3579 |
| BmuI | ACTGGG | 3 cut(s) | 1130, 1272, 3003 |
| BpiI | GAAGAC | 1 cut(s) | 1956 |
| BpmI | CTGGAG | 1 cut(s) | 1380 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1086, 1182, 1324, 1704 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 687, 3593 |
| Bpu14I | TTCGAA | 2 cut(s) | 15, 522 |
| BpuEI | CTTGAG | 2 cut(s) | 1180, 3101 |
| BpuMI | CCSGG | 4 cut(s) | 573, 839, 891, 2861 |
| BsaAI | YACGTR | 1 cut(s) | 3203 |
| BsaI | GGTCTC | 2 cut(s) | 1070, 2834 |
| BsaJI | CCNNGG | 6 cut(s) | 563, 1306, 2085, 2197, 3020, 3439 |
| BsaWI | WCCGGW | 6 cut(s) | 142, 220, 432, 2319, 2825, 3170 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3147, 3177 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 1163, 1337, 2267, 2508, 2990, 3440 |
| Bse118I | RCCGGY | 3 cut(s) | 432, 3052, 3170 |
| Bse1I | ACTGG | 6 cut(s) | 1136, 1278, 2151, 2232, 2607, 3009 |
| Bse21I | CCTNAGG | 1 cut(s) | 2059 |
| Bse3DI | GCAATG | 2 cut(s) | 3063, 3184 |
| BseAI | TCCGGA | 2 cut(s) | 142, 220 |
| BseBI | CCWGG | 4 cut(s) | 1307, 2120, 2198, 2685 |
| BseDI | CCNNGG | 6 cut(s) | 563, 1306, 2085, 2197, 3020, 3439 |
| BseGI | GGATG | 7 cut(s) | 328, 559, 1486, 1887, 2095, 2115, 3661 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 1163, 1337, 2267, 2508, 2990, 3440 |
| BseMI | GCAATG | 2 cut(s) | 3063, 3184 |
| BseNI | ACTGG | 6 cut(s) | 1136, 1278, 2151, 2232, 2607, 3009 |
| BseRI | GAGGAG | 5 cut(s) | 206, 2380, 3161, 3387, 3447 |
| BseSI | GKGCMC | 3 cut(s) | 508, 2524, 3565 |
| BseX3I | CGGCCG | 1 cut(s) | 1453 |
| BseXI | GCAGC | 8 cut(s) | 2480, 2561, 2578, 2906, 3091, 3094, 3310, 3313 |
| BseYI | CCCAGC | 3 cut(s) | 682, 2507, 3566 |
| BsgI | GTGCAG | 8 cut(s) | 420, 1950, 2297, 2858, 3051, 3126, 3183, 3312 |
| Bsh1236I | CGCG | 2 cut(s) | 1827, 3022 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1456 |
| BshFI | GGCC | 9 cut(s) | 571, 842, 977, 1311, 1455, 2196, 2606, 2642, 2812 |
| BshNI | GGYRCC | 3 cut(s) | 35, 2949, 3511 |
| BshTI | ACCGGT | 2 cut(s) | 432, 3170 |
| BsiEI | CGRYCG | 1 cut(s) | 1456 |
| BsiHKAI | GWGCWC | 4 cut(s) | 142, 432, 1156, 3565 |
| BsiHKCI | CYCGRG | 3 cut(s) | 165, 1149, 1416 |
| BslFI | GGGAC | 3 cut(s) | 588, 1666, 2308 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 1163, 1337, 2267, 2508, 2990, 3440 |
| BsmAI | GTCTC | 5 cut(s) | 609, 1070, 1408, 2360, 2834 |
| BsmBI | CGTCTC | 1 cut(s) | 609 |
| BsmFI | GGGAC | 3 cut(s) | 588, 1666, 2308 |
| BsmI | GAATGC | 2 cut(s) | 1091, 1210 |
| BsnI | GGCC | 9 cut(s) | 571, 842, 977, 1311, 1455, 2196, 2606, 2642, 2812 |
| Bso31I | GGTCTC | 2 cut(s) | 1070, 2834 |
| BsoBI | CYCGRG | 3 cut(s) | 165, 1149, 1416 |
| Bsp119I | TTCGAA | 2 cut(s) | 15, 522 |
| Bsp13I | TCCGGA | 2 cut(s) | 142, 220 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 687, 3593 |
| Bsp19I | CCATGG | 1 cut(s) | 563 |
| Bsp68I | TCGCGA | 1 cut(s) | 1827 |
| BspANI | GGCC | 9 cut(s) | 571, 842, 977, 1311, 1455, 2196, 2606, 2642, 2812 |
| BspEI | TCCGGA | 2 cut(s) | 142, 220 |
| BspFNI | CGCG | 2 cut(s) | 1827, 3022 |
| BspHI | TCATGA | 1 cut(s) | 3255 |
| BspLI | GGNNCC | 9 cut(s) | 37, 1143, 1395, 1422, 1654, 2103, 2324, 2951, 3513 |
| BspMAI | CTGCAG | 3 cut(s) | 732, 1599, 2596 |
| BspMI | ACCTGC | 3 cut(s) | 780, 2084, 3151 |
| BspPI | GGATC | 9 cut(s) | 698, 1239, 1357, 1759, 1841, 2252, 2481, 2826, 3010 |
| BspQI | GCTCTTC | 3 cut(s) | 998, 1120, 3096 |
| BspT104I | TTCGAA | 2 cut(s) | 15, 522 |
| BspT107I | GGYRCC | 3 cut(s) | 35, 2949, 3511 |
| BspTNI | GGTCTC | 2 cut(s) | 1070, 2834 |
| BsrDI | GCAATG | 2 cut(s) | 3063, 3184 |
| BsrFI | RCCGGY | 3 cut(s) | 432, 3052, 3170 |
| BsrI | ACTGG | 6 cut(s) | 1136, 1278, 2151, 2232, 2607, 3009 |
| BssAI | RCCGGY | 3 cut(s) | 432, 3052, 3170 |
| BssECI | CCNNGG | 6 cut(s) | 563, 1306, 2085, 2197, 3020, 3439 |
| BssT1I | CCWWGG | 3 cut(s) | 563, 2085, 3439 |
| Bst2UI | CCWGG | 4 cut(s) | 1307, 2120, 2198, 2685 |
| Bst4CI | ACNGT | 8 cut(s) | 43, 398, 992, 1381, 1468, 1995, 2173, 2534 |
| Bst6I | CTCTTC | 8 cut(s) | 470, 759, 998, 1059, 1120, 1382, 1725, 3096 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2798 |
| BstBAI | YACGTR | 1 cut(s) | 3203 |
| BstBI | TTCGAA | 2 cut(s) | 15, 522 |
| BstC8I | GCNNGC | 8 cut(s) | 1339, 1929, 2011, 2244, 2520, 2709, 3087, 3641 |
| BstDSI | CCRYGG | 2 cut(s) | 563, 3020 |
| BstF5I | GGATG | 7 cut(s) | 328, 559, 1486, 1887, 2095, 2115, 3661 |
| BstFNI | CGCG | 2 cut(s) | 1827, 3022 |
| BstHHI | GCGC | 2 cut(s) | 615, 1944 |
| BstMAI | GTCTC | 5 cut(s) | 609, 1070, 1408, 2360, 2834 |
| BstMCI | CGRYCG | 1 cut(s) | 1456 |
| BstNI | CCWGG | 4 cut(s) | 1307, 2120, 2198, 2685 |
| BstNSI | RCATGY | 1 cut(s) | 2859 |
| BstSCI | CCNGG | 8 cut(s) | 571, 837, 889, 1305, 2118, 2196, 2683, 2859 |
| BstSFI | CTRYAG | 5 cut(s) | 42, 728, 1464, 1595, 2592 |
| BstSLI | GKGCMC | 3 cut(s) | 508, 2524, 3565 |
| BstUI | CGCG | 2 cut(s) | 1827, 3022 |
| BstV1I | GCAGC | 8 cut(s) | 2480, 2561, 2578, 2906, 3091, 3094, 3310, 3313 |
| BstV2I | GAAGAC | 1 cut(s) | 1956 |
| BstX2I | RGATCY | 5 cut(s) | 185, 951, 1846, 2486, 3015 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2635, 2737 |
| BstYI | RGATCY | 5 cut(s) | 185, 951, 1846, 2486, 3015 |
| BstZI | CGGCCG | 1 cut(s) | 1453 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2059 |
| BsuRI | GGCC | 9 cut(s) | 571, 842, 977, 1311, 1455, 2196, 2606, 2642, 2812 |
| BtgI | CCRYGG | 2 cut(s) | 563, 3020 |
| BtgZI | GCGATG | 2 cut(s) | 1842, 3399 |
| BtsCI | GGATG | 7 cut(s) | 328, 559, 1486, 1887, 2095, 2115, 3661 |
| BtsI | GCAGTG | 2 cut(s) | 3304, 3546 |
| BtsIMutI | CAGTG | 7 cut(s) | 39, 1143, 1944, 3016, 3045, 3304, 3546 |
| BtuMI | TCGCGA | 1 cut(s) | 1827 |
| BveI | ACCTGC | 3 cut(s) | 780, 2084, 3151 |
| Cac8I | GCNNGC | 8 cut(s) | 1339, 1929, 2011, 2244, 2520, 2709, 3087, 3641 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2708 |
| CciI | TCATGA | 1 cut(s) | 3255 |
| CfoI | GCGC | 2 cut(s) | 615, 1944 |
| Cfr10I | RCCGGY | 3 cut(s) | 432, 3052, 3170 |
| Cfr42I | CCGCGG | 1 cut(s) | 3023 |
| CseI | GACGC | 2 cut(s) | 1119, 3559 |
| Csp6I | GTAC | 9 cut(s) | 859, 1382, 1617, 1665, 1677, 2051, 2657, 3243, 3658 |
| CspAI | ACCGGT | 2 cut(s) | 432, 3170 |
| CviQI | GTAC | 9 cut(s) | 859, 1382, 1617, 1665, 1677, 2051, 2657, 3243, 3658 |
| DraI | TTTAAA | 1 cut(s) | 1692 |
| DraIII | CACNNNGTG | 2 cut(s) | 992, 3104 |
| EaeI | YGGCCR | 3 cut(s) | 569, 975, 1453 |
| EagI | CGGCCG | 1 cut(s) | 1453 |
| Eam1104I | CTCTTC | 8 cut(s) | 470, 759, 998, 1059, 1120, 1382, 1725, 3096 |
| EarI | CTCTTC | 8 cut(s) | 470, 759, 998, 1059, 1120, 1382, 1725, 3096 |
| EciI | GGCGGA | 4 cut(s) | 195, 1213, 2527, 3423 |
| Ecl136II | GAGCTC | 2 cut(s) | 140, 1154 |
| EclXI | CGGCCG | 1 cut(s) | 1453 |
| Eco130I | CCWWGG | 3 cut(s) | 563, 2085, 3439 |
| Eco24I | GRGCYC | 6 cut(s) | 142, 269, 1156, 1396, 1594, 2730 |
| Eco31I | GGTCTC | 2 cut(s) | 1070, 2834 |
| Eco32I | GATATC | 1 cut(s) | 2545 |
| Eco47I | GGWCC | 8 cut(s) | 744, 1141, 1166, 1653, 2322, 2559, 2972, 3443 |
| Eco52I | CGGCCG | 1 cut(s) | 1453 |
| Eco53kI | GAGCTC | 2 cut(s) | 140, 1154 |
| Eco57I | CTGAAG | 6 cut(s) | 1968, 1999, 2025, 2807, 2997, 3149 |
| Eco72I | CACGTG | 1 cut(s) | 3203 |
| Eco81I | CCTNAGG | 1 cut(s) | 2059 |
| Eco88I | CYCGRG | 3 cut(s) | 165, 1149, 1416 |
| EcoICRI | GAGCTC | 2 cut(s) | 140, 1154 |
| EcoO109I | RGGNCCY | 1 cut(s) | 744 |
| EcoRI | GAATTC | 1 cut(s) | 273 |
| EcoRII | CCWGG | 4 cut(s) | 1305, 2118, 2196, 2683 |
| EcoRV | GATATC | 1 cut(s) | 2545 |
| EcoT14I | CCWWGG | 3 cut(s) | 563, 2085, 3439 |
| EcoT38I | GRGCYC | 6 cut(s) | 142, 269, 1156, 1396, 1594, 2730 |
| ErhI | CCWWGG | 3 cut(s) | 563, 2085, 3439 |
| Esp3I | CGTCTC | 1 cut(s) | 609 |
| FaqI | GGGAC | 3 cut(s) | 588, 1666, 2308 |
| FauI | CCCGC | 3 cut(s) | 3015, 3027, 3483 |
| FbaI | TGATCA | 3 cut(s) | 313, 997, 3247 |
| FblI | GTMKAC | 1 cut(s) | 2331 |
| Fnu4HI | GCNGC | 9 cut(s) | 1456, 2469, 2550, 2592, 2895, 3080, 3083, 3324, 3327 |
| FokI | GGATG | 7 cut(s) | 335, 546, 1493, 1894, 2102, 2102, 3648 |
| FriOI | GRGCYC | 6 cut(s) | 142, 269, 1156, 1396, 1594, 2730 |
| Fsp4HI | GCNGC | 9 cut(s) | 1456, 2469, 2550, 2592, 2895, 3080, 3083, 3324, 3327 |
| FspI | TGCGCA | 1 cut(s) | 1943 |
| GlaI | GCGC | 2 cut(s) | 614, 1943 |
| GluI | GCNGC | 9 cut(s) | 1456, 2469, 2550, 2592, 2895, 3080, 3083, 3324, 3327 |
| GsaI | CCCAGC | 3 cut(s) | 686, 2511, 3570 |
| GsuI | CTGGAG | 1 cut(s) | 1380 |
| HaeIII | GGCC | 9 cut(s) | 571, 842, 977, 1311, 1455, 2196, 2606, 2642, 2812 |
| HgaI | GACGC | 2 cut(s) | 1119, 3559 |
| HhaI | GCGC | 2 cut(s) | 615, 1944 |
| Hin6I | GCGC | 2 cut(s) | 613, 1942 |
| HinP1I | GCGC | 2 cut(s) | 613, 1942 |
| HincII | GTYRAC | 2 cut(s) | 3530, 3603 |
| HindII | GTYRAC | 2 cut(s) | 3530, 3603 |
| HindIII | AAGCTT | 2 cut(s) | 2011, 2341 |
| Hpy166II | GTNNAC | 6 cut(s) | 1124, 1141, 2332, 3530, 3563, 3603 |
| Hpy8I | GTNNAC | 6 cut(s) | 1124, 1141, 2332, 3530, 3563, 3603 |
| Hpy99I | CGWCG | 4 cut(s) | 356, 502, 3142, 3575 |
| HpyCH4III | ACNGT | 8 cut(s) | 43, 398, 992, 1381, 1468, 1995, 2173, 2534 |
| HpyCH4IV | ACGT | 7 cut(s) | 231, 497, 1254, 1663, 2585, 3202, 3630 |
| HpySE526I | ACGT | 7 cut(s) | 231, 497, 1254, 1663, 2585, 3202, 3630 |
| HspAI | GCGC | 2 cut(s) | 613, 1942 |
| Kpn2I | TCCGGA | 2 cut(s) | 142, 220 |
| Ksp22I | TGATCA | 3 cut(s) | 313, 997, 3247 |
| KspI | CCGCGG | 1 cut(s) | 3023 |
| LguI | GCTCTTC | 3 cut(s) | 998, 1120, 3096 |
| Lsp1109I | GCAGC | 8 cut(s) | 2480, 2561, 2578, 2906, 3091, 3094, 3310, 3313 |
| LweI | GCATC | 9 cut(s) | 394, 608, 1111, 1549, 2080, 2720, 2875, 3071, 3579 |
| MaeII | ACGT | 7 cut(s) | 231, 497, 1254, 1663, 2585, 3202, 3630 |
| MaeIII | GTNAC | 7 cut(s) | 227, 981, 1280, 1549, 2352, 3048, 3163 |
| MfeI | CAATTG | 2 cut(s) | 2187, 2292 |
| MflI | RGATCY | 5 cut(s) | 185, 951, 1846, 2486, 3015 |
| MlyI | GAGTC | 2 cut(s) | 1408, 1946 |
| MmeI | TCCRAC | 4 cut(s) | 261, 1822, 2155, 3425 |
| MroI | TCCGGA | 2 cut(s) | 142, 220 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1764, 2182 |
| MslI | CAYNNNNRTG | 2 cut(s) | 848, 993 |
| MspA1I | CMGCKG | 3 cut(s) | 686, 1400, 3022 |
| MspR9I | CCNGG | 8 cut(s) | 573, 839, 891, 1307, 2120, 2198, 2685, 2861 |
| MunI | CAATTG | 2 cut(s) | 2187, 2292 |
| Mva1269I | GAATGC | 2 cut(s) | 1091, 1210 |
| MvaI | CCWGG | 4 cut(s) | 1307, 2120, 2198, 2685 |
| MvnI | CGCG | 2 cut(s) | 1827, 3022 |
| NciI | CCSGG | 4 cut(s) | 573, 839, 891, 2861 |
| NcoI | CCATGG | 1 cut(s) | 563 |
| NlaIV | GGNNCC | 9 cut(s) | 37, 1143, 1395, 1422, 1654, 2103, 2324, 2951, 3513 |
| NmeAIII | GCCGAG | 1 cut(s) | 969 |
| NmuCI | GTSAC | 3 cut(s) | 227, 2352, 3048 |
| NruI | TCGCGA | 1 cut(s) | 1827 |
| NsbI | TGCGCA | 1 cut(s) | 1943 |
| NspI | RCATGY | 1 cut(s) | 2859 |
| NspV | TTCGAA | 2 cut(s) | 15, 522 |
| OliI | CACNNNNGTG | 1 cut(s) | 848 |
| PaeR7I | CTCGAG | 1 cut(s) | 1149 |
| PagI | TCATGA | 1 cut(s) | 3255 |
| PaqCI | CACCTGC | 1 cut(s) | 780 |
| PciSI | GCTCTTC | 3 cut(s) | 998, 1120, 3096 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 351, 1117, 1831, 3627 |
| PctI | GAATGC | 2 cut(s) | 1091, 1210 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1764, 2182 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1337 |
| PinAI | ACCGGT | 2 cut(s) | 432, 3170 |
| PkrI | GCNGC | 9 cut(s) | 1457, 2470, 2551, 2593, 2896, 3081, 3084, 3325, 3328 |
| PleI | GAGTC | 2 cut(s) | 1408, 1946 |
| PmaCI | CACGTG | 1 cut(s) | 3203 |
| PmlI | CACGTG | 1 cut(s) | 3203 |
| PpsI | GAGTC | 2 cut(s) | 1408, 1946 |
| Ppu21I | YACGTR | 1 cut(s) | 3203 |
| PpuMI | RGGWCCY | 1 cut(s) | 744 |
| Psp124BI | GAGCTC | 2 cut(s) | 142, 1156 |
| Psp1406I | AACGTT | 1 cut(s) | 2585 |
| Psp5II | RGGWCCY | 1 cut(s) | 744 |
| Psp6I | CCWGG | 4 cut(s) | 1305, 2118, 2196, 2683 |
| PspCI | CACGTG | 1 cut(s) | 3203 |
| PspFI | CCCAGC | 3 cut(s) | 682, 2507, 3566 |
| PspGI | CCWGG | 4 cut(s) | 1305, 2118, 2196, 2683 |
| PspN4I | GGNNCC | 9 cut(s) | 37, 1143, 1395, 1422, 1654, 2103, 2324, 2951, 3513 |
| PspPPI | RGGWCCY | 1 cut(s) | 744 |
| PspXI | VCTCGAGB | 1 cut(s) | 1149 |
| PstI | CTGCAG | 3 cut(s) | 732, 1599, 2596 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2708 |
| PsuI | RGATCY | 5 cut(s) | 185, 951, 1846, 2486, 3015 |
| PvuII | CAGCTG | 2 cut(s) | 686, 1400 |
| RruI | TCGCGA | 1 cut(s) | 1827 |
| RsaI | GTAC | 9 cut(s) | 860, 1383, 1618, 1666, 1678, 2052, 2658, 3244, 3659 |
| RsaNI | GTAC | 9 cut(s) | 859, 1382, 1617, 1665, 1677, 2051, 2657, 3243, 3658 |
| RseI | CAYNNNNRTG | 2 cut(s) | 848, 993 |
| SacI | GAGCTC | 2 cut(s) | 142, 1156 |
| SacII | CCGCGG | 1 cut(s) | 3023 |
| SapI | GCTCTTC | 3 cut(s) | 998, 1120, 3096 |
| SatI | GCNGC | 9 cut(s) | 1456, 2469, 2550, 2592, 2895, 3080, 3083, 3324, 3327 |
| ScaI | AGTACT | 1 cut(s) | 3244 |
| SchI | GAGTC | 2 cut(s) | 1408, 1946 |
| ScrFI | CCNGG | 8 cut(s) | 573, 839, 891, 1307, 2120, 2198, 2685, 2861 |
| SfaNI | GCATC | 9 cut(s) | 394, 608, 1111, 1549, 2080, 2720, 2875, 3071, 3579 |
| SfcI | CTRYAG | 5 cut(s) | 42, 728, 1464, 1595, 2592 |
| Sfr274I | CTCGAG | 1 cut(s) | 1149 |
| Sfr303I | CCGCGG | 1 cut(s) | 3023 |
| SfuI | TTCGAA | 2 cut(s) | 15, 522 |
| SgrBI | CCGCGG | 1 cut(s) | 3023 |
| SinI | GGWCC | 8 cut(s) | 744, 1141, 1166, 1653, 2322, 2559, 2972, 3443 |
| SlaI | CTCGAG | 1 cut(s) | 1149 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 848, 993 |
| SmlI | CTYRAG | 3 cut(s) | 1149, 1159, 3116 |
| SmoI | CTYRAG | 3 cut(s) | 1149, 1159, 3116 |
| SpeI | ACTAGT | 1 cut(s) | 1126 |
| SstI | GAGCTC | 2 cut(s) | 142, 1156 |
| StyD4I | CCNGG | 8 cut(s) | 571, 837, 889, 1305, 2118, 2196, 2683, 2859 |
| StyI | CCWWGG | 3 cut(s) | 563, 2085, 3439 |
| TaaI | ACNGT | 8 cut(s) | 43, 398, 992, 1381, 1468, 1995, 2173, 2534 |
| TaiI | ACGT | 7 cut(s) | 234, 500, 1257, 1666, 2588, 3205, 3633 |
| TatI | WGTACW | 1 cut(s) | 3242 |
| TauI | GCSGC | 1 cut(s) | 1458 |
| TscAI | CASTG | 7 cut(s) | 46, 1143, 1951, 3016, 3045, 3304, 3553 |
| TseFI | GTSAC | 3 cut(s) | 227, 2352, 3048 |
| TseI | GCWGC | 8 cut(s) | 2468, 2549, 2591, 2894, 3079, 3082, 3323, 3326 |
| Tsp45I | GTSAC | 3 cut(s) | 227, 2352, 3048 |
| TspGWI | ACGGA | 5 cut(s) | 39, 1279, 1493, 1626, 2822 |
| TspRI | CASTG | 7 cut(s) | 46, 1143, 1951, 3016, 3045, 3304, 3553 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1337 |
| VneI | GTGCAC | 1 cut(s) | 3561 |
| VpaK11BI | GGWCC | 8 cut(s) | 744, 1141, 1166, 1653, 2322, 2559, 2972, 3443 |
| XapI | RAATTY | 8 cut(s) | 273, 368, 1762, 2080, 2180, 2955, 3209, 3485 |
| XceI | RCATGY | 1 cut(s) | 2859 |
| XhoI | CTCGAG | 1 cut(s) | 1149 |
| XmiI | GTMKAC | 1 cut(s) | 2331 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1764, 2182 |
| ZrmI | AGTACT | 1 cut(s) | 3244 |