Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g04050 |
| malus_domestica | MD04G1216800.v1.1 |
| prunus_persica | Prupe.6G336500_v2.0.a1 |
| pyrus_communis | pycom04g19280 |
| rosa_chinensis | RchiOBHm_Chr3g0452611 |
| rosa_laevigata | RLG00000025578 |
| rosa_multiflora | Rmu_sc0011540.1_g000002 Rmu_sc0034042.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00429650 |
| rosa_rugosa | Rorug02G0641700 |
| rosa_samantha | Rh3AG044200 Rh3BG046500 Rh3DG045500 |
| rosa_wichuraiana | Rw3G003440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 369 |
| AarI | CACCTGC | 1 cut(s) | 88 |
| Acc36I | ACCTGC | 1 cut(s) | 88 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1477 |
| AclWI | GGATC | 2 cut(s) | 1466, 1889 |
| AcoI | YGGCCR | 1 cut(s) | 485 |
| AcsI | RAATTY | 6 cut(s) | 95, 461, 682, 1090, 1569, 1720 |
| AcuI | CTGAAG | 1 cut(s) | 1163 |
| AdeI | CACNNNGTG | 1 cut(s) | 1921 |
| AfaI | GTAC | 7 cut(s) | 569, 600, 718, 735, 926, 1676, 1755 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 814, 1477 |
| AgsI | TTSAA | 8 cut(s) | 51, 416, 441, 518, 544, 1051, 1271, 1634 |
| AjiI | CACGTC | 1 cut(s) | 1783 |
| AjnI | CCWGG | 2 cut(s) | 1564, 1669 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 543, 575, 1143, 1175 |
| AluBI | AGCT | 8 cut(s) | 175, 357, 547, 833, 1323, 1352, 1865, 1872 |
| AluI | AGCT | 8 cut(s) | 175, 357, 547, 833, 1323, 1352, 1865, 1872 |
| Alw26I | GTCTC | 5 cut(s) | 299, 341, 659, 1394, 1479 |
| AlwI | GGATC | 2 cut(s) | 1466, 1889 |
| AoxI | GGCC | 2 cut(s) | 144, 485 |
| ApeKI | GCWGC | 1 cut(s) | 1085 |
| ApoI | RAATTY | 6 cut(s) | 95, 461, 682, 1090, 1569, 1720 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 667, 699 |
| AseI | ATTAAT | 1 cut(s) | 447 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1055 |
| AspS9I | GGNCC | 2 cut(s) | 603, 1816 |
| AsuHPI | GGTGA | 5 cut(s) | 69, 157, 647, 814, 1876 |
| AvaII | GGWCC | 2 cut(s) | 603, 1816 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 725, 758 |
| BalI | TGGCCA | 1 cut(s) | 487 |
| BbsI | GAAGAC | 2 cut(s) | 742, 955 |
| BbvI | GCAGC | 1 cut(s) | 1072 |
| BccI | CCATC | 6 cut(s) | 155, 322, 770, 1605, 1991, 1992 |
| BciT130I | CCWGG | 2 cut(s) | 1566, 1671 |
| BcoDI | GTCTC | 5 cut(s) | 299, 341, 659, 1394, 1479 |
| BfaI | CTAG | 1 cut(s) | 494 |
| BfuAI | ACCTGC | 1 cut(s) | 88 |
| BisI | GCNGC | 1 cut(s) | 1086 |
| BlsI | GCNGC | 1 cut(s) | 1087 |
| Bme1390I | CCNGG | 2 cut(s) | 1566, 1671 |
| Bme18I | GGWCC | 2 cut(s) | 603, 1816 |
| BmgBI | CACGTC | 1 cut(s) | 1783 |
| BmgT120I | GGNCC | 2 cut(s) | 603, 1816 |
| BmiI | GGNNCC | 1 cut(s) | 1817 |
| BmrFI | CCNGG | 2 cut(s) | 1566, 1671 |
| BmrI | ACTGGG | 2 cut(s) | 58, 590 |
| BmsI | GCATC | 3 cut(s) | 202, 1056, 1960 |
| BmuI | ACTGGG | 2 cut(s) | 58, 590 |
| BpiI | GAAGAC | 2 cut(s) | 742, 955 |
| BpuEI | CTTGAG | 1 cut(s) | 1584 |
| BsaBI | GATNNNNATC | 3 cut(s) | 891, 1880, 1974 |
| BsaI | GGTCTC | 4 cut(s) | 299, 659, 1394, 1479 |
| BsaJI | CCNNGG | 2 cut(s) | 1564, 1670 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 814, 1477 |
| Bse1I | ACTGG | 4 cut(s) | 64, 168, 585, 2027 |
| Bse3DI | GCAATG | 3 cut(s) | 268, 1817, 1836 |
| Bse8I | GATNNNNATC | 3 cut(s) | 891, 1880, 1974 |
| BseBI | CCWGG | 2 cut(s) | 1566, 1671 |
| BseDI | CCNNGG | 2 cut(s) | 1564, 1670 |
| BseGI | GGATG | 4 cut(s) | 147, 1384, 1684, 1792 |
| BseJI | GATNNNNATC | 3 cut(s) | 891, 1880, 1974 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 814, 1477 |
| BseMI | GCAATG | 3 cut(s) | 268, 1817, 1836 |
| BseMII | CTCAG | 3 cut(s) | 36, 1248, 1452 |
| BseNI | ACTGG | 4 cut(s) | 64, 168, 585, 2027 |
| BseRI | GAGGAG | 1 cut(s) | 1963 |
| BseXI | GCAGC | 1 cut(s) | 1072 |
| BseYI | CCCAGC | 1 cut(s) | 1865 |
| BshFI | GGCC | 2 cut(s) | 146, 487 |
| BsiSI | CCGG | 1 cut(s) | 1177 |
| BslFI | GGGAC | 2 cut(s) | 808, 1829 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 814, 1477 |
| BsmAI | GTCTC | 5 cut(s) | 299, 341, 659, 1394, 1479 |
| BsmFI | GGGAC | 2 cut(s) | 808, 1829 |
| BsnI | GGCC | 2 cut(s) | 146, 487 |
| Bso31I | GGTCTC | 4 cut(s) | 299, 659, 1394, 1479 |
| Bsp143I | GATC | 7 cut(s) | 132, 159, 229, 835, 919, 1458, 1881 |
| BspANI | GGCC | 2 cut(s) | 146, 487 |
| BspCNI | CTCAG | 3 cut(s) | 35, 1249, 1451 |
| BspHI | TCATGA | 2 cut(s) | 91, 702 |
| BspLI | GGNNCC | 1 cut(s) | 1817 |
| BspMI | ACCTGC | 1 cut(s) | 88 |
| BspPI | GGATC | 2 cut(s) | 1466, 1889 |
| BspTNI | GGTCTC | 4 cut(s) | 299, 659, 1394, 1479 |
| BsrDI | GCAATG | 3 cut(s) | 268, 1817, 1836 |
| BsrI | ACTGG | 4 cut(s) | 64, 168, 585, 2027 |
| BssECI | CCNNGG | 2 cut(s) | 1564, 1670 |
| BssMI | GATC | 7 cut(s) | 132, 159, 229, 835, 919, 1458, 1881 |
| Bst2UI | CCWGG | 2 cut(s) | 1566, 1671 |
| Bst4CI | ACNGT | 1 cut(s) | 1823 |
| Bst6I | CTCTTC | 4 cut(s) | 972, 1068, 1422, 1446 |
| BstC8I | GCNNGC | 4 cut(s) | 951, 1035, 1350, 1794 |
| BstDEI | CTNAG | 3 cut(s) | 22, 1257, 1438 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 812 |
| BstF5I | GGATG | 4 cut(s) | 147, 1384, 1684, 1792 |
| BstKTI | GATC | 7 cut(s) | 135, 162, 232, 838, 922, 1461, 1884 |
| BstMAI | GTCTC | 5 cut(s) | 299, 341, 659, 1394, 1479 |
| BstMBI | GATC | 7 cut(s) | 132, 159, 229, 835, 919, 1458, 1881 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1043, 1739 |
| BstNI | CCWGG | 2 cut(s) | 1566, 1671 |
| BstNSI | RCATGY | 2 cut(s) | 1037, 1184 |
| BstSCI | CCNGG | 2 cut(s) | 1564, 1669 |
| BstV1I | GCAGC | 1 cut(s) | 1072 |
| BstV2I | GAAGAC | 2 cut(s) | 742, 955 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1193 |
| BsuRI | GGCC | 2 cut(s) | 146, 487 |
| BtrI | CACGTC | 1 cut(s) | 1783 |
| BtsCI | GGATG | 4 cut(s) | 147, 1384, 1684, 1792 |
| BtsI | GCAGTG | 1 cut(s) | 906 |
| BtsIMutI | CAGTG | 2 cut(s) | 906, 1828 |
| BveI | ACCTGC | 1 cut(s) | 88 |
| Cac8I | GCNNGC | 4 cut(s) | 951, 1035, 1350, 1794 |
| CciI | TCATGA | 2 cut(s) | 91, 702 |
| Cfr13I | GGNCC | 2 cut(s) | 603, 1816 |
| Csp6I | GTAC | 7 cut(s) | 568, 599, 717, 734, 925, 1675, 1754 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 895, 930 |
| CviQI | GTAC | 7 cut(s) | 568, 599, 717, 734, 925, 1675, 1754 |
| DdeI | CTNAG | 3 cut(s) | 22, 1257, 1438 |
| DpnI | GATC | 7 cut(s) | 134, 161, 231, 837, 921, 1460, 1883 |
| DpnII | GATC | 7 cut(s) | 132, 159, 229, 835, 919, 1458, 1881 |
| DraI | TTTAAA | 1 cut(s) | 891 |
| DraIII | CACNNNGTG | 1 cut(s) | 1921 |
| EaeI | YGGCCR | 1 cut(s) | 485 |
| Eam1104I | CTCTTC | 4 cut(s) | 972, 1068, 1422, 1446 |
| EarI | CTCTTC | 4 cut(s) | 972, 1068, 1422, 1446 |
| Eco31I | GGTCTC | 4 cut(s) | 299, 659, 1394, 1479 |
| Eco47I | GGWCC | 2 cut(s) | 603, 1816 |
| Eco57I | CTGAAG | 1 cut(s) | 1163 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 812 |
| EcoRI | GAATTC | 1 cut(s) | 95 |
| EcoRII | CCWGG | 2 cut(s) | 1564, 1669 |
| EcoT22I | ATGCAT | 2 cut(s) | 624, 1192 |
| FaqI | GGGAC | 2 cut(s) | 808, 1829 |
| FauNDI | CATATG | 1 cut(s) | 28 |
| Fnu4HI | GCNGC | 1 cut(s) | 1086 |
| FokI | GGATG | 4 cut(s) | 134, 1391, 1671, 1799 |
| Fsp4HI | GCNGC | 1 cut(s) | 1086 |
| FspBI | CTAG | 1 cut(s) | 494 |
| GluI | GCNGC | 1 cut(s) | 1086 |
| GsaI | CCCAGC | 1 cut(s) | 1869 |
| HaeIII | GGCC | 2 cut(s) | 146, 487 |
| HapII | CCGG | 1 cut(s) | 1177 |
| HincII | GTYRAC | 1 cut(s) | 1204 |
| HindII | GTYRAC | 1 cut(s) | 1204 |
| HindIII | AAGCTT | 2 cut(s) | 173, 545 |
| HinfI | GANTC | 7 cut(s) | 1056, 1136, 1553, 1616, 1656, 1702, 1891 |
| HpaI | GTTAAC | 1 cut(s) | 1204 |
| HpaII | CCGG | 1 cut(s) | 1177 |
| HphI | GGTGA | 5 cut(s) | 69, 157, 647, 814, 1876 |
| Hpy166II | GTNNAC | 3 cut(s) | 187, 717, 1204 |
| Hpy188I | TCNGA | 6 cut(s) | 124, 193, 1065, 1143, 1258, 1747 |
| Hpy188III | TCNNGA | 6 cut(s) | 92, 664, 703, 839, 1440, 1778 |
| Hpy8I | GTNNAC | 3 cut(s) | 187, 717, 1204 |
| HpyAV | CCTTC | 3 cut(s) | 1146, 1369, 1792 |
| HpyCH4III | ACNGT | 1 cut(s) | 1823 |
| HpyCH4IV | ACGT | 2 cut(s) | 987, 1782 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1043, 1739 |
| HpyF3I | CTNAG | 3 cut(s) | 22, 1257, 1438 |
| HpySE526I | ACGT | 2 cut(s) | 987, 1782 |
| KspAI | GTTAAC | 1 cut(s) | 1204 |
| Kzo9I | GATC | 7 cut(s) | 132, 159, 229, 835, 919, 1458, 1881 |
| LmnI | GCTCC | 3 cut(s) | 1283, 1869, 2012 |
| Lsp1109I | GCAGC | 1 cut(s) | 1072 |
| LweI | GCATC | 3 cut(s) | 202, 1056, 1960 |
| MaeI | CTAG | 1 cut(s) | 494 |
| MaeII | ACGT | 2 cut(s) | 987, 1782 |
| MaeIII | GTNAC | 8 cut(s) | 102, 496, 766, 1096, 1433, 1778, 1913, 1921 |
| MalI | GATC | 7 cut(s) | 134, 161, 231, 837, 921, 1460, 1883 |
| MboI | GATC | 7 cut(s) | 132, 159, 229, 835, 919, 1458, 1881 |
| MlsI | TGGCCA | 1 cut(s) | 487 |
| MluNI | TGGCCA | 1 cut(s) | 487 |
| MlyI | GAGTC | 2 cut(s) | 1130, 1650 |
| MmeI | TCCRAC | 2 cut(s) | 851, 1712 |
| Mox20I | TGGCCA | 1 cut(s) | 487 |
| Mph1103I | ATGCAT | 2 cut(s) | 624, 1192 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1055 |
| MscI | TGGCCA | 1 cut(s) | 487 |
| MslI | CAYNNNNRTG | 3 cut(s) | 864, 1185, 1338 |
| Msp20I | TGGCCA | 1 cut(s) | 487 |
| MspA1I | CMGCKG | 2 cut(s) | 833, 1865 |
| MspI | CCGG | 1 cut(s) | 1177 |
| MspR9I | CCNGG | 2 cut(s) | 1566, 1671 |
| MvaI | CCWGG | 2 cut(s) | 1566, 1671 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1043, 1739 |
| NdeI | CATATG | 1 cut(s) | 28 |
| NdeII | GATC | 7 cut(s) | 132, 159, 229, 835, 919, 1458, 1881 |
| NlaIV | GGNNCC | 1 cut(s) | 1817 |
| NmuCI | GTSAC | 7 cut(s) | 102, 496, 766, 1433, 1778, 1913, 1921 |
| NsiI | ATGCAT | 2 cut(s) | 624, 1192 |
| NspI | RCATGY | 2 cut(s) | 1037, 1184 |
| PaeI | GCATGC | 1 cut(s) | 1037 |
| PagI | TCATGA | 2 cut(s) | 91, 702 |
| PaqCI | CACCTGC | 1 cut(s) | 88 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1055 |
| PfeI | GAWTC | 5 cut(s) | 1056, 1553, 1616, 1702, 1891 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1477 |
| PkrI | GCNGC | 1 cut(s) | 1087 |
| PleI | GAGTC | 2 cut(s) | 1130, 1650 |
| PpsI | GAGTC | 2 cut(s) | 1130, 1650 |
| PshBI | ATTAAT | 1 cut(s) | 447 |
| PsiI | TTATAA | 1 cut(s) | 369 |
| Psp6I | CCWGG | 2 cut(s) | 1564, 1669 |
| PspFI | CCCAGC | 1 cut(s) | 1865 |
| PspGI | CCWGG | 2 cut(s) | 1564, 1669 |
| PspN4I | GGNNCC | 1 cut(s) | 1817 |
| PspPI | GGNCC | 2 cut(s) | 603, 1816 |
| PvuII | CAGCTG | 2 cut(s) | 833, 1865 |
| RsaI | GTAC | 7 cut(s) | 569, 600, 718, 735, 926, 1676, 1755 |
| RsaNI | GTAC | 7 cut(s) | 568, 599, 717, 734, 925, 1675, 1754 |
| RseI | CAYNNNNRTG | 3 cut(s) | 864, 1185, 1338 |
| SatI | GCNGC | 1 cut(s) | 1086 |
| Sau3AI | GATC | 7 cut(s) | 132, 159, 229, 835, 919, 1458, 1881 |
| Sau96I | GGNCC | 2 cut(s) | 603, 1816 |
| SchI | GAGTC | 2 cut(s) | 1130, 1650 |
| ScrFI | CCNGG | 2 cut(s) | 1566, 1671 |
| SfaNI | GCATC | 3 cut(s) | 202, 1056, 1960 |
| SinI | GGWCC | 2 cut(s) | 603, 1816 |
| SmiI | ATTTAAAT | 1 cut(s) | 891 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 864, 1185, 1338 |
| SmlI | CTYRAG | 1 cut(s) | 1599 |
| SmoI | CTYRAG | 1 cut(s) | 1599 |
| SphI | GCATGC | 1 cut(s) | 1037 |
| SspMI | CTAG | 1 cut(s) | 494 |
| StyD4I | CCNGG | 2 cut(s) | 1564, 1669 |
| SwaI | ATTTAAAT | 1 cut(s) | 891 |
| TaaI | ACNGT | 1 cut(s) | 1823 |
| TaiI | ACGT | 2 cut(s) | 990, 1785 |
| TaqI | TCGA | 5 cut(s) | 228, 465, 663, 966, 1449 |
| TatI | WGTACW | 2 cut(s) | 716, 924 |
| TfiI | GAWTC | 5 cut(s) | 1056, 1553, 1616, 1702, 1891 |
| TscAI | CASTG | 2 cut(s) | 913, 1828 |
| TseFI | GTSAC | 7 cut(s) | 102, 496, 766, 1433, 1778, 1913, 1921 |
| TseI | GCWGC | 1 cut(s) | 1085 |
| Tsp45I | GTSAC | 7 cut(s) | 102, 496, 766, 1433, 1778, 1913, 1921 |
| TspGWI | ACGGA | 2 cut(s) | 616, 1520 |
| TspRI | CASTG | 2 cut(s) | 913, 1828 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1477 |
| VpaK11BI | GGWCC | 2 cut(s) | 603, 1816 |
| VspI | ATTAAT | 1 cut(s) | 447 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 812 |
| XapI | RAATTY | 6 cut(s) | 95, 461, 682, 1090, 1569, 1720 |
| XceI | RCATGY | 2 cut(s) | 1037, 1184 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1055 |
| XspI | CTAG | 1 cut(s) | 494 |
| Zsp2I | ATGCAT | 2 cut(s) | 624, 1192 |