Rmu_sc0034042.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034042.1
OG0016866
Physical Location & Seq
Forward (+)
28 .. 1845
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034042.1_g000001.1.cds

Sequence Viewer

Length: 1818 bp
atgattggtggctatgtgcaagctggtcagttcggcaaggcatttgatttgtttcatgaaatgtgtgattgcggcattaggcctagttcagtaactatgctgagcatgattcaagtatgcattaaaactgcggatttcaagcttgcgaaatgtgttcatggtagcatagttggactgggaatgagcaatgaggtttcggtgcttacctcgttggttgatatgtatagtaatattggtgacgtgcttagtgcatgttgggtttttgagaccatgcccaaaagaaatttggtttcgtggaatgtcatgatctcaggatgtgttcaaaatggtatggtgcatgaatcgtttgccttctttggtagattagttgcaagtggtgttaggtttgattcagggaccatggtgagcctaattcagggttgttcccaaacagctgatttgaaaggtggaaaaatcctacactgttgttcattaaggaggggttttgacttaaatcccattttgtccactgccactgttgatctttactctaaatgtggtgcagtaaagcaggcaacttttgtctttgacagaatggaagagaggaatgttattacatggaccgctatgcttgtgggactaacacaaaatgggcatgcagaagaagccttgaagctattctgtcagatgcaaaaagagggagttgctgccaattcagtgacactggttagtttagtccattcttgtgcccatttgggctctctgaagaaaggaaagagtgttcatgctcacataatccggcagggccattcatttgacatagttaacatgacatccttaattgatatgtatgccaagtgtggaacaataaagtatgctgagaggatatttaacaatggctccatctgtagagatgttatcgtatggaactctatgataacaagctatggtattcatggtcatggacagcaagctcttggtatgtatagaaaaatgaaggaggagggatttgagccaaacgaaacctcctttctttctcttctaactgcttgtagtcactcaggccttcttgaagagggcatgaagtttttccacagcatggagagaaaccataacattaggctgacagaaaaacactatgcaagttttgtggatcttctaagcagagcaggcagatttgaagaagccgaggcattgattgaacaaatgccttttaaaccaggaagctctgtttttgaagcattgctcagtggatgtcaagctcacaagaacattgaactgggtctaaagacggcagatagattactttgtattgattccatgaatcctagtgtttatgtcgttgtttcaaatatttatgctcaagcaaggagatgggatgatgtgaactacattcgaaacctcatgaggacaagaggactgaggaaaacacccgggtgtagcttgattgaagtgggaaaccaggtccacacattcttcgctggagacaattcacatcctaattgggcagagatttatcagcatttagagaacataagagtagaagtggaggcttctggttatatccccaatacaagcagtgttcttcgcaatgtggatgatccaatgaagataaggctgctatgggggcacagcgagagattagccattgcatttgggctcttaagtacaccagctgggagcttgattagaatcacaaagaatctaagagtgtgtgttgattgtcacaatgtgactaaacttatatcaaagatgatgaggagggagcttattgtgagagatgccaatcgttttcatcactttgtgaatgggaagtgctcttgtaatgattactggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

605

Amino Acids

67.45

Weight (kDa)

8.46

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016866)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g04050
malus_domestica MD04G1216800.v1.1
prunus_persica Prupe.6G336500_v2.0.a1
pyrus_communis pycom04g19280
rosa_chinensis RchiOBHm_Chr3g0452611
rosa_laevigata RLG00000025578
rosa_multiflora Rmu_sc0011540.1_g000002 Rmu_sc0034042.1_g000001
rosa_roxburghii Rroxscaffold_6G00429650
rosa_rugosa Rorug02G0641700
rosa_samantha Rh3AG044200 Rh3BG046500 Rh3DG045500
rosa_wichuraiana Rw3G003440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1078
AciI CCGC 3 cut(s) 72, 131, 603
AclWI GGATC 2 cut(s) 1140, 1574
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 764
AdeI CACNNNGTG 2 cut(s) 1711, 1783
AfaI GTAC 1 cut(s) 1648
AfiI CCNNNNNNNGG 2 cut(s) 415, 1078
AflII CTTAAG 1 cut(s) 1642
AjiI CACGTC 1 cut(s) 241
AjnI CCWGG 2 cut(s) 1198, 1440
AleI CACNNNNGTG 1 cut(s) 1414
AloI GAACNNNNNNTCC 2 cut(s) 744, 776
Alw21I GWGCWC 1 cut(s) 1799
Alw26I GTCTC 2 cut(s) 260, 1458
AlwI GGATC 2 cut(s) 1140, 1574
Ama87I CYCGRG 1 cut(s) 1412
AoxI GGCC 3 cut(s) 80, 784, 1042
ApeKI GCWGC 2 cut(s) 686, 1597
ApoI RAATTY 1 cut(s) 283
Asp700I GAANNNNTTC 2 cut(s) 656, 1067
AspS9I GGNCC 4 cut(s) 396, 600, 784, 1444
AsuC2I CCSGG 2 cut(s) 1413, 1414
AsuHPI GGTGA 2 cut(s) 248, 415
AsuII TTCGAA 1 cut(s) 1375
AvaI CYCGRG 1 cut(s) 1412
AvaII GGWCC 3 cut(s) 396, 600, 1444
BaeGI GKGCMC 2 cut(s) 730, 1611
BanII GRGCYC 2 cut(s) 740, 1641
Bbv12I GWGCWC 1 cut(s) 1799
BbvI GCAGC 2 cut(s) 673, 1584
BccI CCATC 2 cut(s) 890, 1347
BceAI ACGGC 1 cut(s) 1287
BciT130I CCWGG 2 cut(s) 1200, 1442
BcnI CCSGG 2 cut(s) 1413, 1414
BcoDI GTCTC 2 cut(s) 260, 1458
BfaI CTAG 2 cut(s) 84, 1308
BfmI CTRYAG 1 cut(s) 886
BfrI CTTAAG 1 cut(s) 1642
BisI GCNGC 3 cut(s) 73, 687, 1598
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 3 cut(s) 74, 688, 1599
Bme1390I CCNGG 4 cut(s) 1200, 1413, 1414, 1442
Bme18I GGWCC 3 cut(s) 396, 600, 1444
BmeT110I CYCGRG 1 cut(s) 1412
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 4 cut(s) 396, 600, 784, 1444
BmiI GGNNCC 2 cut(s) 397, 880
BmrFI CCNGG 4 cut(s) 1200, 1413, 1414, 1442
BmrI ACTGGG 2 cut(s) 185, 1268
BmsI GCATC 2 cut(s) 657, 1750
BmuI ACTGGG 2 cut(s) 185, 1268
BpmI CTGGAG 1 cut(s) 1482
Bpu1102I GCTNAGC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 1375
BpuEI CTTGAG 1 cut(s) 1326
BpuMI CCSGG 2 cut(s) 1413, 1414
BsaBI GATNNNNATC 2 cut(s) 1670, 1764
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 3 cut(s) 399, 1167, 1412
BsaXI ACNNNNNCTCC 4 cut(s) 863, 893, 989, 1019
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 1078
Bse1I ACTGG 4 cut(s) 180, 708, 1263, 1817
Bse3DI GCAATG 4 cut(s) 193, 1220, 1576, 1626
Bse8I GATNNNNATC 2 cut(s) 1670, 1764
BseBI CCWGG 2 cut(s) 1200, 1442
BseDI CCNNGG 3 cut(s) 399, 1167, 1412
BseGI GGATG 6 cut(s) 320, 812, 1238, 1363, 1474, 1582
BseJI GATNNNNATC 2 cut(s) 1670, 1764
BseLI CCNNNNNNNGG 2 cut(s) 415, 1078
BseMI GCAATG 4 cut(s) 193, 1220, 1576, 1626
BseMII CTCAG 6 cut(s) 92, 324, 849, 1053, 1240, 1391
BseNI ACTGG 4 cut(s) 180, 708, 1263, 1817
BseRI GAGGAG 2 cut(s) 995, 1753
BseSI GKGCMC 2 cut(s) 730, 1611
BseXI GCAGC 2 cut(s) 673, 1584
BseYI CCCAGC 1 cut(s) 1655
BsgI GTGCAG 1 cut(s) 561
BshFI GGCC 3 cut(s) 82, 786, 1044
BsiHKAI GWGCWC 1 cut(s) 1799
BsiHKCI CYCGRG 1 cut(s) 1412
BsiSI CCGG 2 cut(s) 778, 1413
BslFI GGGAC 2 cut(s) 409, 630
BslI CCNNNNNNNGG 2 cut(s) 415, 1078
BsmAI GTCTC 2 cut(s) 260, 1458
BsmFI GGGAC 2 cut(s) 409, 630
BsnI GGCC 3 cut(s) 82, 786, 1044
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 1412
Bsp119I TTCGAA 1 cut(s) 1375
Bsp1286I GDGCHC 5 cut(s) 730, 740, 1611, 1641, 1799
Bsp143I GATC 4 cut(s) 306, 520, 1132, 1579
Bsp1720I GCTNAGC 1 cut(s) 101
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 3 cut(s) 72, 131, 603
BspANI GGCC 3 cut(s) 82, 786, 1044
BspCNI CTCAG 6 cut(s) 93, 323, 850, 1052, 1239, 1392
BspHI TCATGA 3 cut(s) 55, 303, 1383
BspLI GGNNCC 2 cut(s) 397, 880
BspPI GGATC 2 cut(s) 1140, 1574
BspT104I TTCGAA 1 cut(s) 1375
BspTI CTTAAG 1 cut(s) 1642
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 4 cut(s) 193, 1220, 1576, 1626
BsrI ACTGG 4 cut(s) 180, 708, 1263, 1817
BssECI CCNNGG 3 cut(s) 399, 1167, 1412
BssMI GATC 4 cut(s) 306, 520, 1132, 1579
BssT1I CCWWGG 1 cut(s) 399
Bst2UI CCWGG 2 cut(s) 1200, 1442
Bst4CI ACNGT 2 cut(s) 464, 517
Bst6I CTCTTC 3 cut(s) 573, 1023, 1047
BstAFI CTTAAG 1 cut(s) 1642
BstBI TTCGAA 1 cut(s) 1375
BstC8I GCNNGC 6 cut(s) 21, 144, 552, 636, 951, 1150
BstDEI CTNAG 9 cut(s) 101, 245, 310, 858, 1039, 1139, 1226, 1400, 1685
BstDSI CCRYGG 1 cut(s) 399
BstENI CCTNNNNNAGG 1 cut(s) 413
BstF5I GGATG 6 cut(s) 320, 812, 1238, 1363, 1474, 1582
BstKTI GATC 4 cut(s) 309, 523, 1135, 1582
BstMAI GTCTC 2 cut(s) 260, 1458
BstMBI GATC 4 cut(s) 306, 520, 1132, 1579
BstMWI GCNNNNNNNGC 3 cut(s) 644, 1149, 1606
BstNI CCWGG 2 cut(s) 1200, 1442
BstNSI RCATGY 2 cut(s) 255, 638
BstSCI CCNGG 4 cut(s) 1198, 1411, 1412, 1440
BstSFI CTRYAG 1 cut(s) 886
BstSLI GKGCMC 2 cut(s) 730, 1611
BstV1I GCAGC 2 cut(s) 673, 1584
BstX2I RGATCY 1 cut(s) 1132
BstYI RGATCY 1 cut(s) 1132
BsuRI GGCC 3 cut(s) 82, 786, 1044
BtgI CCRYGG 1 cut(s) 399
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 6 cut(s) 320, 812, 1238, 1363, 1474, 1582
BtsI GCAGTG 2 cut(s) 507, 1564
BtsIMutI CAGTG 7 cut(s) 460, 507, 513, 701, 702, 1234, 1564
Cac8I GCNNGC 6 cut(s) 21, 144, 552, 636, 951, 1150
CciI TCATGA 3 cut(s) 55, 303, 1383
Cfr13I GGNCC 4 cut(s) 396, 600, 784, 1444
Cfr9I CCCGGG 1 cut(s) 1412
CsiI ACCWGGT 1 cut(s) 1440
Csp6I GTAC 1 cut(s) 1647
CspCI CAANNNNNGTGG 2 cut(s) 1110, 1145
CviQI GTAC 1 cut(s) 1647
DdeI CTNAG 9 cut(s) 101, 245, 310, 858, 1039, 1139, 1226, 1400, 1685
DpnI GATC 4 cut(s) 308, 522, 1134, 1581
DpnII GATC 4 cut(s) 306, 520, 1132, 1579
DraI TTTAAA 1 cut(s) 1195
DraIII CACNNNGTG 2 cut(s) 1711, 1783
Eam1104I CTCTTC 3 cut(s) 573, 1023, 1047
EarI CTCTTC 3 cut(s) 573, 1023, 1047
Eco130I CCWWGG 1 cut(s) 399
Eco147I AGGCCT 2 cut(s) 82, 1044
Eco24I GRGCYC 2 cut(s) 740, 1641
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 3 cut(s) 396, 600, 1444
Eco57I CTGAAG 1 cut(s) 764
Eco88I CYCGRG 1 cut(s) 1412
EcoNI CCTNNNNNAGG 1 cut(s) 413
EcoRII CCWGG 2 cut(s) 1198, 1440
EcoT14I CCWWGG 1 cut(s) 399
EcoT22I ATGCAT 1 cut(s) 122
EcoT38I GRGCYC 2 cut(s) 740, 1641
ErhI CCWWGG 1 cut(s) 399
FaqI GGGAC 2 cut(s) 409, 630
Fnu4HI GCNGC 3 cut(s) 73, 687, 1598
FokI GGATG 6 cut(s) 327, 799, 1245, 1370, 1461, 1589
FriOI GRGCYC 2 cut(s) 740, 1641
Fsp4HI GCNGC 3 cut(s) 73, 687, 1598
FspBI CTAG 2 cut(s) 84, 1308
GluI GCNGC 3 cut(s) 73, 687, 1598
GsaI CCCAGC 1 cut(s) 1659
GsuI CTGGAG 1 cut(s) 1482
HaeIII GGCC 3 cut(s) 82, 786, 1044
HapII CCGG 2 cut(s) 778, 1413
HincII GTYRAC 1 cut(s) 805
HindII GTYRAC 1 cut(s) 805
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 7 cut(s) 109, 341, 389, 1295, 1303, 1671, 1681
HpaI GTTAAC 1 cut(s) 805
HpaII CCGG 2 cut(s) 778, 1413
HphI GGTGA 2 cut(s) 248, 415
Hpy166II GTNNAC 5 cut(s) 507, 805, 1366, 1447, 1649
Hpy188I TCNGA 2 cut(s) 666, 744
Hpy188III TCNNGA 5 cut(s) 56, 304, 312, 1049, 1384
Hpy8I GTNNAC 5 cut(s) 507, 805, 1366, 1447, 1649
HpyAV CCTTC 3 cut(s) 361, 970, 1055
HpyCH4III ACNGT 2 cut(s) 464, 517
HpyCH4IV ACGT 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 3 cut(s) 644, 1149, 1606
HpyF3I CTNAG 9 cut(s) 101, 245, 310, 858, 1039, 1139, 1226, 1400, 1685
HpySE526I ACGT 1 cut(s) 240
KspAI GTTAAC 1 cut(s) 805
Kzo9I GATC 4 cut(s) 306, 520, 1132, 1579
LmnI GCTCC 3 cut(s) 884, 1659, 1744
Lsp1109I GCAGC 2 cut(s) 673, 1584
LweI GCATC 2 cut(s) 657, 1750
MabI ACCWGGT 1 cut(s) 1440
MaeI CTAG 2 cut(s) 84, 1308
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 6 cut(s) 91, 236, 697, 1034, 1703, 1711
MalI GATC 4 cut(s) 308, 522, 1134, 1581
MboI GATC 4 cut(s) 306, 520, 1132, 1579
MflI RGATCY 1 cut(s) 1132
MhlI GDGCHC 5 cut(s) 730, 740, 1611, 1641, 1799
MluCI AATT 6 cut(s) 283, 411, 691, 819, 1468, 1480
MmeI TCCRAC 1 cut(s) 151
Mph1103I ATGCAT 1 cut(s) 122
MroXI GAANNNNTTC 2 cut(s) 656, 1067
MseI TTAA 8 cut(s) 123, 473, 491, 804, 818, 870, 1194, 1643
MslI CAYNNNNRTG 3 cut(s) 723, 939, 1414
MspA1I CMGCKG 2 cut(s) 434, 1655
MspCI CTTAAG 1 cut(s) 1642
MspI CCGG 2 cut(s) 778, 1413
MspR9I CCNGG 4 cut(s) 1200, 1413, 1414, 1442
MvaI CCWGG 2 cut(s) 1200, 1442
MwoI GCNNNNNNNGC 3 cut(s) 644, 1149, 1606
NciI CCSGG 2 cut(s) 1413, 1414
NcoI CCATGG 1 cut(s) 399
NdeII GATC 4 cut(s) 306, 520, 1132, 1579
NlaIV GGNNCC 2 cut(s) 397, 880
NmeAIII GCCGAG 1 cut(s) 1192
NmuCI GTSAC 5 cut(s) 236, 697, 1034, 1703, 1711
NsiI ATGCAT 1 cut(s) 122
NspI RCATGY 2 cut(s) 255, 638
NspV TTCGAA 1 cut(s) 1375
OliI CACNNNNGTG 1 cut(s) 1414
PaeI GCATGC 1 cut(s) 638
PagI TCATGA 3 cut(s) 55, 303, 1383
PceI AGGCCT 2 cut(s) 82, 1044
PdmI GAANNNNTTC 2 cut(s) 656, 1067
PfeI GAWTC 7 cut(s) 109, 341, 389, 1295, 1303, 1671, 1681
PflMI CCANNNNNTGG 1 cut(s) 1078
PkrI GCNGC 3 cut(s) 74, 688, 1599
Psp6I CCWGG 2 cut(s) 1198, 1440
PspFI CCCAGC 1 cut(s) 1655
PspGI CCWGG 2 cut(s) 1198, 1440
PspN4I GGNNCC 2 cut(s) 397, 880
PspPI GGNCC 4 cut(s) 396, 600, 784, 1444
PsuI RGATCY 1 cut(s) 1132
PvuII CAGCTG 2 cut(s) 434, 1655
RsaI GTAC 1 cut(s) 1648
RsaNI GTAC 1 cut(s) 1647
RseI CAYNNNNRTG 3 cut(s) 723, 939, 1414
SaqAI TTAA 8 cut(s) 123, 473, 491, 804, 818, 870, 1194, 1643
SatI GCNGC 3 cut(s) 73, 687, 1598
Sau3AI GATC 4 cut(s) 306, 520, 1132, 1579
Sau96I GGNCC 4 cut(s) 396, 600, 784, 1444
ScrFI CCNGG 4 cut(s) 1200, 1413, 1414, 1442
SduI GDGCHC 5 cut(s) 730, 740, 1611, 1641, 1799
SexAI ACCWGGT 1 cut(s) 1440
SfaNI GCATC 2 cut(s) 657, 1750
SfcI CTRYAG 1 cut(s) 886
SfuI TTCGAA 1 cut(s) 1375
SinI GGWCC 3 cut(s) 396, 600, 1444
SmaI CCCGGG 1 cut(s) 1414
SmiMI CAYNNNNRTG 3 cut(s) 723, 939, 1414
SmlI CTYRAG 2 cut(s) 1341, 1642
SmoI CTYRAG 2 cut(s) 1341, 1642
SphI GCATGC 1 cut(s) 638
Sse9I AATT 6 cut(s) 283, 411, 691, 819, 1468, 1480
SseBI AGGCCT 2 cut(s) 82, 1044
SsiI CCGC 3 cut(s) 72, 131, 603
SspI AATATT 2 cut(s) 232, 1333
SspMI CTAG 2 cut(s) 84, 1308
StuI AGGCCT 2 cut(s) 82, 1044
StyD4I CCNGG 4 cut(s) 1198, 1411, 1412, 1440
StyI CCWWGG 1 cut(s) 399
TaaI ACNGT 2 cut(s) 464, 517
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 1375
TasI AATT 6 cut(s) 283, 411, 691, 819, 1468, 1480
TatI WGTACW 1 cut(s) 1646
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 7 cut(s) 109, 341, 389, 1295, 1303, 1671, 1681
Tru1I TTAA 8 cut(s) 123, 473, 491, 804, 818, 870, 1194, 1643
Tru9I TTAA 8 cut(s) 123, 473, 491, 804, 818, 870, 1194, 1643
TscAI CASTG 7 cut(s) 467, 514, 520, 702, 708, 1234, 1564
TseFI GTSAC 5 cut(s) 236, 697, 1034, 1703, 1711
TseI GCWGC 2 cut(s) 686, 1597
Tsp45I GTSAC 5 cut(s) 236, 697, 1034, 1703, 1711
TspMI CCCGGG 1 cut(s) 1412
TspRI CASTG 7 cut(s) 467, 514, 520, 702, 708, 1234, 1564
Van91I CCANNNNNTGG 1 cut(s) 1078
Vha464I CTTAAG 1 cut(s) 1642
VpaK11BI GGWCC 3 cut(s) 396, 600, 1444
XagI CCTNNNNNAGG 1 cut(s) 413
XapI RAATTY 1 cut(s) 283
XceI RCATGY 2 cut(s) 255, 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XmaI CCCGGG 1 cut(s) 1412
XmnI GAANNNNTTC 2 cut(s) 656, 1067
XspI CTAG 2 cut(s) 84, 1308
Zsp2I ATGCAT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.