Prupe.6G350100_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
29861541 .. 29864329
2789 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G350100.1

Sequence Viewer

Length: 1758 bp
ATGATGGGGTATACAGTCACCCAACATAATTTTACAGTTGATGTTCGTACTTTGCATGGGTGTACAAAGCAAGTTAGCCCTTGTTCTGGCATTGGACCTTTCTCAATATCAAAGTTTTTGAACAAGTATAATCATGAAGCTCAATATGGTTTACAGTGGAAAGGAGATGTTAATTCCAAAAGAAATGTGTGTGTTTTACAGCGTAAGGGTTTCCAAAGAAGTGTTTGTATTGATAGAGTCGATGAAGTTAACGTAGATGAATGGAGCATTGATAATGATGAGATGGGTATTGAGAAAAAATCTGGAGAGGAAATAAATAAAAAGAAGACTCGTACTTCTTTTATATTGAATGTAGAAGGGCGCTTTGTTGGAAATTCTGAGGAAACCAATAATGATATTCTTCGAAAATTTTGCAGCCGTGGGAGGTTAATCGATGCATCAAGGTTAATTGAGGTCATGGCACGTCAAAACCAAATTCCATACTTCCCTTCTTGCACAAACTTAATCCGGGGCCTTGTCAAAATAGATCGATTAGATAAAGCTGCGAAAATTCTGAAGATCATGATCATGTCTGGGGGCGTTCCAGATATTATAACTTATAACATGATGGTTGGAGGTCTCTGTAAGAGAGGACAGCTAAGGTCTGCAATTGATCTTGTGGAAGACATGAGCTTGACTGGTTGCCCTCCGGATGTGATTACTTACAATGCAATTATACGCTGCATGTTTACTTTTGGGAATTTTGATCAGGCAATTGCCTTTTGGAAGGACCAACTGAGAAAGGGATGCCCTCCTTATATAGTCACCTATACAGTTCTCATTGAGCTAGTCTGCAAACACTGTGGAACCATGCGGGCTGTGGAAGTTTTGGATGATATGGTGGTAGAGGGATGTTATCCTGATATTATCACCTACAATTCTCTGATTAATTTTACTTGCAGGCACAATATGCTTGAAGATACTGCTTTGATTATACATAATCTTCTATCTCATGGGTTGAAGCCAAATGCTATCACTTACAACACTATTCTCCATTCTCTTTGTAGCCGTGGGTGCTGGGATGAAGTTGATGAAATCTTCACAATAATGAACGAAACTTCTGAATCCCCTACAGTTGTTACTTACAATATTTTGATCAATGGTTTATGTAAATTTGGGCTTTTAGATCGTGCCATCAACTTCTTTACTCAAATGATTTCTCAAAATTGTTCGCCTGACATTATAACTTATAACACACTCCTGGGAGCTCTTTGTAGGGAGGGAATGATTGATCAGGGCCTCGAATTACTTCATCTTTTATGTGGCACCAGTCGATCTCCTGGTTTGATCACTTACAATACTGTGATTGATGGATTGGCTAAACAGGGTTGTATGGAGAAAGCAATGGGATTGTATGGTCAAATGGTAGAAAATGGAATCATTCCTGATGAAATTACCCATCGTTCTTTGGTTGGTGGGTTTTGCGGGGTGAATCTAGTTGAGGAAGCTGTTCTGATATTGAAGGAGATGCAGAAGAGAGGCCATCCGGTCCGTAATATTTCTTACAAATTTGTGATCCATGGATTATGTAGAAACAAGAGAGTTGATGTTGCAATACAAGTTCTAGAAATGATGATATCAAATCGATGCATGCCAGATGGGGCAATTTATTCAACTATAATTGAAGGTGTAGCTGCTGCTGGTATGACAAAAGAGGCTGATGAGTTGCATCAGAAGCTGATCGAATGGAACATTTTAAGTGAAGAGGTCATGTGTTAA

Protein Analysis

586

Amino Acids

65.69

Weight (kDa)

6.15

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 593, 600, 1223, 1230
AccB1I GGYRCC 1 cut(s) 1304
AccI GTMKAC 1 cut(s) 11
AccIII TCCGGA 1 cut(s) 688
AciI CCGC 2 cut(s) 853, 1464
AclWI GGATC 1 cut(s) 1549
AcsI RAATTY 7 cut(s) 373, 407, 474, 549, 739, 1151, 1547
AcuI CTGAAG 1 cut(s) 575
AfaI GTAC 3 cut(s) 49, 64, 334
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 7 cut(s) 121, 349, 956, 1000, 1501, 1653, 1664
AjiI CACGTC 1 cut(s) 464
AjnI CCWGG 2 cut(s) 1239, 1318
AluBI AGCT 9 cut(s) 140, 542, 637, 672, 826, 1247, 1487, 1673, 1717
AluI AGCT 9 cut(s) 140, 542, 637, 672, 826, 1247, 1487, 1673, 1717
Alw21I GWGCWC 1 cut(s) 1249
Alw26I GTCTC 1 cut(s) 623
AlwI GGATC 1 cut(s) 1549
AlwNI CAGNNNCTG 1 cut(s) 1717
Aor13HI TCCGGA 1 cut(s) 688
AoxI GGCC 3 cut(s) 511, 1276, 1519
ApeKI GCWGC 5 cut(s) 414, 542, 720, 1673, 1676
ApoI RAATTY 7 cut(s) 373, 407, 474, 549, 739, 1151, 1547
AseI ATTAAT 1 cut(s) 927
Asp700I GAANNNNTTC 2 cut(s) 1287, 1488
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 5 cut(s) 95, 511, 769, 1276, 1528
AsuC2I CCSGG 1 cut(s) 509
AsuHPI GGTGA 4 cut(s) 10, 796, 901, 1480
AsuII TTCGAA 1 cut(s) 403
AvaII GGWCC 3 cut(s) 95, 769, 1528
BanI GGYRCC 1 cut(s) 1304
BanII GRGCYC 1 cut(s) 1249
BbsI GAAGAC 2 cut(s) 332, 669
Bbv12I GWGCWC 1 cut(s) 1249
BbvI GCAGC 5 cut(s) 426, 529, 707, 1660, 1663
BccI CCATC 7 cut(s) 277, 601, 1181, 1343, 1446, 1530, 1631
BceAI ACGGC 2 cut(s) 402, 1032
BcgI CGANNNNNNTGC 2 cut(s) 393, 427
BciT130I CCWGG 2 cut(s) 1241, 1320
BclI TGATCA 5 cut(s) 564, 745, 1134, 1270, 1326
BcnI CCSGG 1 cut(s) 509
BcoDI GTCTC 1 cut(s) 623
BfaI CTAG 3 cut(s) 827, 1475, 1604
BfmI CTRYAG 1 cut(s) 1110
BfoI RGCGCY 1 cut(s) 364
BisI GCNGC 5 cut(s) 415, 543, 721, 1674, 1677
BlsI GCNGC 5 cut(s) 416, 544, 722, 1675, 1678
Bme1390I CCNGG 3 cut(s) 509, 1241, 1320
Bme18I GGWCC 3 cut(s) 95, 769, 1528
BmgBI CACGTC 1 cut(s) 464
BmgT120I GGNCC 5 cut(s) 95, 511, 769, 1276, 1528
BmiI GGNNCC 3 cut(s) 512, 847, 1306
BmrFI CCNGG 3 cut(s) 509, 1241, 1320
BmsI GCATC 6 cut(s) 424, 446, 776, 1497, 1616, 1717
BpiI GAAGAC 2 cut(s) 332, 669
BpmI CTGGAG 1 cut(s) 324
Bpu10I CCTNAGC 1 cut(s) 638
Bpu14I TTCGAA 1 cut(s) 403
BpuMI CCSGG 1 cut(s) 509
Bsa29I ATCGAT 3 cut(s) 432, 529, 1624
BsaBI GATNNNNATC 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 623
BsaJI CCNNGG 5 cut(s) 418, 508, 1048, 1240, 1558
BsaWI WCCGGW 2 cut(s) 688, 1525
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 682, 1308
Bse3DI GCAATG 1 cut(s) 1389
Bse8I GATNNNNATC 1 cut(s) 563
BseAI TCCGGA 1 cut(s) 688
BseBI CCWGG 2 cut(s) 1241, 1320
BseCI ATCGAT 3 cut(s) 432, 529, 1624
BseDI CCNNGG 5 cut(s) 418, 508, 1048, 1240, 1558
BseGI GGATG 6 cut(s) 697, 791, 877, 896, 1066, 1522
BseJI GATNNNNATC 1 cut(s) 563
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 1389
BseMII CTCAG 2 cut(s) 369, 767
BseNI ACTGG 2 cut(s) 682, 1308
BseXI GCAGC 5 cut(s) 426, 529, 707, 1660, 1663
BseYI CCCAGC 1 cut(s) 1056
BshFI GGCC 3 cut(s) 513, 1278, 1521
BshNI GGYRCC 1 cut(s) 1304
BshVI ATCGAT 3 cut(s) 432, 529, 1624
BsiHKAI GWGCWC 1 cut(s) 1249
BsiSI CCGG 3 cut(s) 508, 689, 1526
BslI CCNNNNNNNGG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 623
BsnI GGCC 3 cut(s) 513, 1278, 1521
Bso31I GGTCTC 1 cut(s) 623
Bsp119I TTCGAA 1 cut(s) 403
Bsp1286I GDGCHC 1 cut(s) 1249
Bsp13I TCCGGA 1 cut(s) 688
Bsp1407I TGTACA 1 cut(s) 62
Bsp19I CCATGG 1 cut(s) 1558
BspACI CCGC 2 cut(s) 853, 1464
BspANI GGCC 3 cut(s) 513, 1278, 1521
BspCNI CTCAG 2 cut(s) 370, 768
BspDI ATCGAT 3 cut(s) 432, 529, 1624
BspEI TCCGGA 1 cut(s) 688
BspHI TCATGA 2 cut(s) 133, 561
BspLI GGNNCC 3 cut(s) 512, 847, 1306
BspPI GGATC 1 cut(s) 1549
BspT104I TTCGAA 1 cut(s) 403
BspT107I GGYRCC 1 cut(s) 1304
BspTNI GGTCTC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 1389
BsrGI TGTACA 1 cut(s) 62
BsrI ACTGG 2 cut(s) 682, 1308
BssECI CCNNGG 5 cut(s) 418, 508, 1048, 1240, 1558
BssNAI GTATAC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 1558
Bst1107I GTATAC 1 cut(s) 12
Bst2UI CCWGG 2 cut(s) 1241, 1320
Bst4CI ACNGT 7 cut(s) 16, 37, 156, 814, 842, 1114, 1342
Bst6I CTCTTC 2 cut(s) 1508, 1737
BstAPI GCANNNNNTGC 1 cut(s) 949
BstAUI TGTACA 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 403
BstC8I GCNNGC 3 cut(s) 855, 941, 1631
BstDEI CTNAG 3 cut(s) 378, 638, 776
BstDSI CCRYGG 3 cut(s) 418, 1048, 1558
BstF5I GGATG 6 cut(s) 697, 791, 877, 896, 1066, 1522
BstH2I RGCGCY 1 cut(s) 364
BstHHI GCGC 1 cut(s) 363
BstMAI GTCTC 1 cut(s) 623
BstMWI GCNNNNNNNGC 3 cut(s) 949, 1053, 1714
BstNI CCWGG 2 cut(s) 1241, 1320
BstNSI RCATGY 2 cut(s) 727, 1633
BstSCI CCNGG 3 cut(s) 507, 1239, 1318
BstSFI CTRYAG 1 cut(s) 1110
BstV1I GCAGC 5 cut(s) 426, 529, 707, 1660, 1663
BstV2I GAAGAC 2 cut(s) 332, 669
BstZ17I GTATAC 1 cut(s) 12
Bsu15I ATCGAT 3 cut(s) 432, 529, 1624
BsuRI GGCC 3 cut(s) 513, 1278, 1521
BsuTUI ATCGAT 3 cut(s) 432, 529, 1624
BtgI CCRYGG 3 cut(s) 418, 1048, 1558
BtrI CACGTC 1 cut(s) 464
BtsCI GGATG 6 cut(s) 697, 791, 877, 896, 1066, 1522
BtsIMutI CAGTG 2 cut(s) 161, 838
Cac8I GCNNGC 3 cut(s) 855, 941, 1631
CaiI CAGNNNCTG 1 cut(s) 1717
CciI TCATGA 2 cut(s) 133, 561
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 5 cut(s) 95, 511, 769, 1276, 1528
ClaI ATCGAT 3 cut(s) 432, 529, 1624
CpoI CGGWCCG 1 cut(s) 1528
Csp6I GTAC 3 cut(s) 48, 63, 333
CspCI CAANNNNNGTGG 2 cut(s) 823, 858
CspI CGGWCCG 1 cut(s) 1528
CviQI GTAC 3 cut(s) 48, 63, 333
DdeI CTNAG 3 cut(s) 378, 638, 776
Eam1104I CTCTTC 2 cut(s) 1508, 1737
EarI CTCTTC 2 cut(s) 1508, 1737
Ecl136II GAGCTC 1 cut(s) 1247
Eco130I CCWWGG 1 cut(s) 1558
Eco24I GRGCYC 1 cut(s) 1249
Eco31I GGTCTC 1 cut(s) 623
Eco32I GATATC 1 cut(s) 1617
Eco47I GGWCC 3 cut(s) 95, 769, 1528
Eco53kI GAGCTC 1 cut(s) 1247
Eco57I CTGAAG 1 cut(s) 575
EcoICRI GAGCTC 1 cut(s) 1247
EcoO109I RGGNCCY 2 cut(s) 511, 1276
EcoRII CCWGG 2 cut(s) 1239, 1318
EcoRV GATATC 1 cut(s) 1617
EcoT14I CCWWGG 1 cut(s) 1558
EcoT22I ATGCAT 2 cut(s) 439, 1631
EcoT38I GRGCYC 1 cut(s) 1249
ErhI CCWWGG 1 cut(s) 1558
FauI CCCGC 2 cut(s) 846, 1457
FbaI TGATCA 5 cut(s) 564, 745, 1134, 1270, 1326
FblI GTMKAC 1 cut(s) 11
Fnu4HI GCNGC 5 cut(s) 415, 543, 721, 1674, 1677
FokI GGATG 6 cut(s) 704, 798, 884, 903, 1073, 1509
FriOI GRGCYC 1 cut(s) 1249
Fsp4HI GCNGC 5 cut(s) 415, 543, 721, 1674, 1677
FspBI CTAG 3 cut(s) 827, 1475, 1604
GlaI GCGC 1 cut(s) 362
GluI GCNGC 5 cut(s) 415, 543, 721, 1674, 1677
GsaI CCCAGC 1 cut(s) 1060
GsuI CTGGAG 1 cut(s) 324
HaeII RGCGCY 1 cut(s) 364
HaeIII GGCC 3 cut(s) 513, 1278, 1521
HapII CCGG 3 cut(s) 508, 689, 1526
HhaI GCGC 1 cut(s) 363
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 5 cut(s) 237, 328, 1103, 1416, 1471
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 3 cut(s) 508, 689, 1526
HphI GGTGA 4 cut(s) 10, 796, 901, 1480
Hpy166II GTNNAC 5 cut(s) 12, 63, 152, 250, 729
Hpy188I TCNGA 6 cut(s) 379, 555, 924, 1102, 1494, 1713
Hpy188III TCNNGA 8 cut(s) 134, 303, 562, 584, 689, 899, 1424, 1604
Hpy8I GTNNAC 5 cut(s) 12, 63, 152, 250, 729
HpyAV CCTTC 5 cut(s) 350, 498, 760, 1495, 1658
HpyCH4III ACNGT 7 cut(s) 16, 37, 156, 814, 842, 1114, 1342
HpyCH4IV ACGT 2 cut(s) 252, 463
HpyF10VI GCNNNNNNNGC 3 cut(s) 949, 1053, 1714
HpyF3I CTNAG 3 cut(s) 378, 638, 776
HpySE526I ACGT 2 cut(s) 252, 463
HspAI GCGC 1 cut(s) 361
Kpn2I TCCGGA 1 cut(s) 688
Ksp22I TGATCA 5 cut(s) 564, 745, 1134, 1270, 1326
KspAI GTTAAC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 264, 1244
Lsp1109I GCAGC 5 cut(s) 426, 529, 707, 1660, 1663
LweI GCATC 6 cut(s) 424, 446, 776, 1497, 1616, 1717
MaeI CTAG 3 cut(s) 827, 1475, 1604
MaeII ACGT 2 cut(s) 252, 463
MaeIII GTNAC 3 cut(s) 16, 802, 1117
MboII GAAGA 9 cut(s) 337, 392, 568, 674, 968, 974, 1069, 1525, 1754
MfeI CAATTG 2 cut(s) 648, 753
MhlI GDGCHC 1 cut(s) 1249
MlyI GAGTC 2 cut(s) 246, 322
MmeI TCCRAC 2 cut(s) 349, 592
Mph1103I ATGCAT 2 cut(s) 439, 1631
MroI TCCGGA 1 cut(s) 688
MroXI GAANNNNTTC 2 cut(s) 1287, 1488
MseI TTAA 8 cut(s) 171, 249, 428, 446, 503, 927, 1736, 1756
MslI CAYNNNNRTG 2 cut(s) 566, 1085
MspI CCGG 3 cut(s) 508, 689, 1526
MspR9I CCNGG 3 cut(s) 509, 1241, 1320
MunI CAATTG 2 cut(s) 648, 753
MvaI CCWGG 2 cut(s) 1241, 1320
MwoI GCNNNNNNNGC 3 cut(s) 949, 1053, 1714
NciI CCSGG 1 cut(s) 509
NcoI CCATGG 1 cut(s) 1558
NlaIV GGNNCC 3 cut(s) 512, 847, 1306
NmuCI GTSAC 2 cut(s) 16, 802
NsiI ATGCAT 2 cut(s) 439, 1631
NspI RCATGY 2 cut(s) 727, 1633
NspV TTCGAA 1 cut(s) 403
PaeI GCATGC 1 cut(s) 1633
PagI TCATGA 2 cut(s) 133, 561
PdmI GAANNNNTTC 2 cut(s) 1287, 1488
PfeI GAWTC 3 cut(s) 1103, 1416, 1471
PkrI GCNGC 5 cut(s) 416, 544, 722, 1675, 1678
PleI GAGTC 2 cut(s) 245, 322
PpsI GAGTC 2 cut(s) 245, 322
PshBI ATTAAT 1 cut(s) 927
PsiI TTATAA 4 cut(s) 593, 600, 1223, 1230
Psp124BI GAGCTC 1 cut(s) 1249
Psp6I CCWGG 2 cut(s) 1239, 1318
PspFI CCCAGC 1 cut(s) 1056
PspGI CCWGG 2 cut(s) 1239, 1318
PspN4I GGNNCC 3 cut(s) 512, 847, 1306
PspPI GGNCC 5 cut(s) 95, 511, 769, 1276, 1528
PstNI CAGNNNCTG 1 cut(s) 1717
RsaI GTAC 3 cut(s) 49, 64, 334
RsaNI GTAC 3 cut(s) 48, 63, 333
RseI CAYNNNNRTG 2 cut(s) 566, 1085
Rsr2I CGGWCCG 1 cut(s) 1528
RsrII CGGWCCG 1 cut(s) 1528
SacI GAGCTC 1 cut(s) 1249
SaqAI TTAA 8 cut(s) 171, 249, 428, 446, 503, 927, 1736, 1756
SatI GCNGC 5 cut(s) 415, 543, 721, 1674, 1677
Sau96I GGNCC 5 cut(s) 95, 511, 769, 1276, 1528
SchI GAGTC 2 cut(s) 246, 322
ScrFI CCNGG 3 cut(s) 509, 1241, 1320
SduI GDGCHC 1 cut(s) 1249
SfaNI GCATC 6 cut(s) 424, 446, 776, 1497, 1616, 1717
SfcI CTRYAG 1 cut(s) 1110
SfuI TTCGAA 1 cut(s) 403
SinI GGWCC 3 cut(s) 95, 769, 1528
SmiMI CAYNNNNRTG 2 cut(s) 566, 1085
SphI GCATGC 1 cut(s) 1633
SsiI CCGC 2 cut(s) 853, 1464
SspI AATATT 2 cut(s) 1129, 1537
SspMI CTAG 3 cut(s) 827, 1475, 1604
SstI GAGCTC 1 cut(s) 1249
StyD4I CCNGG 3 cut(s) 507, 1239, 1318
StyI CCWWGG 1 cut(s) 1558
TaaI ACNGT 7 cut(s) 16, 37, 156, 814, 842, 1114, 1342
TaiI ACGT 2 cut(s) 255, 466
TaqI TCGA 8 cut(s) 240, 403, 432, 529, 1281, 1312, 1624, 1722
TatI WGTACW 1 cut(s) 62
TfiI GAWTC 3 cut(s) 1103, 1416, 1471
Tru1I TTAA 8 cut(s) 171, 249, 428, 446, 503, 927, 1736, 1756
Tru9I TTAA 8 cut(s) 171, 249, 428, 446, 503, 927, 1736, 1756
TscAI CASTG 2 cut(s) 161, 845
TseFI GTSAC 2 cut(s) 16, 802
TseI GCWGC 5 cut(s) 414, 542, 720, 1673, 1676
Tsp45I GTSAC 2 cut(s) 16, 802
TspDTI ATGAA 8 cut(s) 150, 258, 273, 1077, 1086, 1103, 1280, 1443
TspGWI ACGGA 1 cut(s) 1520
TspRI CASTG 2 cut(s) 161, 845
VpaK11BI GGWCC 3 cut(s) 95, 769, 1528
VspI ATTAAT 1 cut(s) 927
XapI RAATTY 7 cut(s) 373, 407, 474, 549, 739, 1151, 1547
XbaI TCTAGA 1 cut(s) 1603
XceI RCATGY 2 cut(s) 727, 1633
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XmiI GTMKAC 1 cut(s) 11
XmnI GAANNNNTTC 2 cut(s) 1287, 1488
XspI CTAG 3 cut(s) 827, 1475, 1604
Zsp2I ATGCAT 2 cut(s) 439, 1631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.