Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008347

Physical Location & Seq

Genomic Coordinates Reverse (-)

48438686 .. 48442073

Gene Structure 3388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025812

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1839 bp

ATGAGATTGGGAATGAGCTCAACACACCTCTCTTTCTTCACTCACAAAACACAGAAAACCAAACAGAACCCTTCTTCCGTCTTCCACTGCTACACAGAACAACACTCAACTCCACAAGCTGTGGTTCTCAGTCTGAAGTTGGAGAGTAGGGAAATTAGCCCCTGTTCTGGCATTGGTCATTTACCAATATCAAGGTTTTTAAGCAAGTATAGTCGTGAATCTCAGTGTTGTTTACGATGGGGAGGTGTTGGTTCCAAAAGTGATGTGCAGTATTTACAGCATAGGGGTTCTCGGAGAAGTGTTTGTATTGATAGAGTCCATGAAGTGGACCTGGATGAATGGAGCATTGATACTGATAAGATGGGTATTGAGAAAAAATCTGGAGAAGAATTGTATGAGAAGAGGCCTCATAGGTCTTCAACAGTGGATTTAGATGGGCGTTTTGTTGGAAATGGGGAGGATAAAAATAATGATGTTCTTCGGAACTTCTGCAGCCGTGGGAAGTTACTTCTTGCATCAAGACTGATTGATATCATGGCACGTCGAAACCAAATTCCGGATTTCCCTTGTTGCAAAAACCTAATCCGAGGGCTCGTTAAAATAGATCATGTAGATAAAGCTGCGAAGATTCTAAAGATCATGGTCATGTCTGGTGGGGTTCCAGATATTATCACATATAACATGATGGTGAGTGCTTTCTGTAAGAAAGGACAGTTAAGATCTGCGATTGATCTTGTGGAAGACATGAGCTTGAGCGGTTGCCCTCCAGATGTGATTACTTACAATACAATAATCCGTGGCATGTTTGCTGTTGGGAATTTTGAGCAGGCTATTGCATTTTGGAAGGAGGAACTGAGAAAGGGGTGCCCTCCTTATATAGTTACCTATACTGTTCTCATCGACCTAATCTGCAGACACTGTGGAATCATGCGGGCTGTGGAAGTTTTGGATGATATGGTAGTAGAGGGATGTTATCCTGATATTATTACCTACAACTCTCTGGTTAATTTTACTAGTAGACGGAATAAACTTGAAGATACTACCCTGGTCATTCATAATCTTCTCTCTCATGGGTTCGATCCCAATGTTGTTACTTACAATACTATTCTCCATTCGCTTTGTGGCCGTGGGTTTTGGGATGAAGCAGATGAAATCTTCACAATCATGAATGAGACGTCTGTATCCCCTACAGTTGTTACTTACAATATTTTGATCAATGGTTTGTGTAAATATGGGATTTTAGATCGCGCAATCAACTTCTTTACTCAAATGATTTCTCAAAATTGTTCGCCGGATATCATAACCTATAACACACTGCTAGGAGCTCTTTGCAGGGAGGGAATGATTGATCAGGCCATCCAGTTACTTGAACTTTTAAGTGGTACCAGTTGTTCACCGGGTCTGATCACTTACAATACTGTGATTGATGGATTAGCTAAATCGGGGTCTATGGAGAAAGCCATGGGATTGTATGGTCAAATGGTAGAAAATGGTATCATTCCTGATGAAATTACCCATCGTTCTTTGGTTGGTGGATTTTGCCGGGCAAATCTAGTTGAGGAAGCTGCTGCTATACTGAAGGAGATGCATAAACGAGGCCATCAGGTCCGAACTAGCTCTTTCAAGTATGTGATCCATGGATTATGTAGAAACAATAAAGTGGATATTGCAATACAAGTTCTAGAAATGATGATATCAAATCGGTGCATGCCAGATGAGGGAATTTATTTAACTATACTCAAAGGTGTAACTGCTGCTGGTATGACAAAAGAGGCTGATCAGTTGCGTCAGAAGCTGATTGAATGGAATGTTGTACGAGGAGAGACAATGTTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

613

Amino Acids

68.65

Weight (kDa)

7.2

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	159 - 283	1.1e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	191 - 235	2.6e-08	PPR repeat family
PPR_1	PF12854	218 - 250	2e-10	PPR repeat
PPR_2	PF13041	221 - 268	8.1e-17	PPR repeat family
PPR	PF01535	224 - 254	1.4e-06	PPR repeat
PPR_3	PF13812	245 - 303	1.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	253 - 283	3.2e-07	PPR repeat
PPR_2	PF13041	256 - 305	1.2e-12	PPR repeat family
PPR_3	PF13812	286 - 337	6.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	292 - 336	2.7e-10	PPR repeat family
PPR_3	PF13812	350 - 406	9.3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	358 - 389	1.7e-07	PPR repeat
PPR_2	PF13041	361 - 410	2.2e-17	PPR repeat family
TPR_24	PF23276	383 - 493	4.7e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	394 - 424	2.2e-11	PPR repeat
PPR_2	PF13041	396 - 445	2.3e-17	PPR repeat family
PPR	PF01535	399 - 429	9.4e-06	PPR repeat
PPR_3	PF13812	422 - 476	1.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	428 - 457	5e-11	PPR repeat
PPR_2	PF13041	431 - 480	4.6e-13	PPR repeat family
TPR_24	PF23276	444 - 560	1.7e-10	Fungal tetratrico peptide repeats
PPR_1	PF12854	464 - 495	4.6e-07	PPR repeat
PPR_2	PF13041	466 - 515	2.5e-14	PPR repeat family
PPR	PF01535	469 - 499	9.8e-09	PPR repeat
PPR_long	PF17177	483 - 591	9.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	497 - 529	4.5e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0008347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08610
fragaria_vesca	FvH4_6g01910 FvH4_6g01910 FvH4_6g01910 FvH4_6g01910 FvH4_6g01910
malus_domestica	MD04G1230200.v1.1
prunus_persica	Prupe.6G350100_v2.0.a1 Prupe.6G350100_v2.0.a1 Prupe.6G350100_v2.0.a1 Prupe.6G350100_v2.0.a1
pyrus_communis	pycom04g20410
rosa_chinensis	RchiOBHm_Chr3g0449641
rosa_laevigata	RLG00000025812
rosa_multiflora	Rmu_sc0007357.1_g000003 Rmu_sc0009629.1_g000014
rosa_roxburghii	Rroxscaffold_6G00427540
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh3AG020500 Rh3BG021200 Rh3CG019700 Rh3DG021000
rosa_wichuraiana	Rw3G001690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1178
Acc65I	GGTACC	1 cut(s)	1382
AccB1I	GGYRCC	2 cut(s)	864, 1382
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccBSI	CCGCTC	1 cut(s)	756
AccI	GTMKAC	1 cut(s)	1018
AccII	CGCG	1 cut(s)	1248
AccIII	TCCGGA	1 cut(s)	556
AciI	CCGC	2 cut(s)	756, 931
AclWI	GGATC	2 cut(s)	1073, 1627
AcoI	YGGCCR	1 cut(s)	1123
AcsI	RAATTY	3 cut(s)	552, 817, 1722
AcuI	CTGAAG	2 cut(s)	155, 1598
AcyI	GRCGYC	1 cut(s)	1175
AfaI	GTAC	2 cut(s)	1384, 1815
AfiI	CCNNNNNNNGG	4 cut(s)	167, 325, 556, 1718
AgsI	TTSAA	5 cut(s)	420, 1034, 1370, 1624, 1802
AhlI	ACTAGT	1 cut(s)	1013
AjiI	CACGTC	1 cut(s)	542
AjnI	CCWGG	2 cut(s)	330, 1044
AloI	GAACNNNNNNTCC	2 cut(s)	59, 91
AluBI	AGCT	9 cut(s)	18, 119, 620, 750, 1325, 1436, 1565, 1617, 1795
AluI	AGCT	9 cut(s)	18, 119, 620, 750, 1325, 1436, 1565, 1617, 1795
Alw21I	GWGCWC	2 cut(s)	20, 1327
Alw26I	GTCTC	2 cut(s)	1166, 1817
AlwI	GGATC	2 cut(s)	1073, 1627
AlwNI	CAGNNNCTG	2 cut(s)	918, 1795
Aor13HI	TCCGGA	1 cut(s)	556
AoxI	GGCC	4 cut(s)	404, 1123, 1353, 1597
ApeKI	GCWGC	5 cut(s)	492, 620, 1565, 1568, 1754
ApoI	RAATTY	3 cut(s)	552, 817, 1722
Asp718I	GGTACC	1 cut(s)	1382
AspLEI	GCGC	1 cut(s)	1250
AspS9I	GGNCC	2 cut(s)	328, 1606
AsuC2I	CCSGG	2 cut(s)	1398, 1544
AsuHPI	GGTGA	2 cut(s)	700, 1386
AvaII	GGWCC	2 cut(s)	328, 1606
BaeGI	GKGCMC	1 cut(s)	869
BaeI	ACNNNNGTAYC	2 cut(s)	1164, 1197
BanI	GGYRCC	2 cut(s)	864, 1382
BanII	GRGCYC	3 cut(s)	20, 594, 1327
BbsI	GAAGAC	3 cut(s)	73, 408, 747
Bbv12I	GWGCWC	2 cut(s)	20, 1327
BbvI	GCAGC	5 cut(s)	504, 607, 1552, 1555, 1741
BccI	CCATC	8 cut(s)	231, 355, 428, 679, 1364, 1421, 1524, 1608
BceAI	ACGGC	2 cut(s)	480, 1110
BciT130I	CCWGG	2 cut(s)	332, 1046
BciVI	GTATCC	1 cut(s)	1192
BclI	TGATCA	4 cut(s)	1212, 1348, 1404, 1777
BcnI	CCSGG	2 cut(s)	1398, 1544
BcoDI	GTCTC	2 cut(s)	1166, 1817
BcuI	ACTAGT	1 cut(s)	1013
BfaI	CTAG	6 cut(s)	1014, 1319, 1553, 1614, 1682, 1837
BfmI	CTRYAG	3 cut(s)	490, 910, 1188
BfuI	GTATCC	1 cut(s)	1192
BglII	AGATCT	1 cut(s)	719
BisI	GCNGC	5 cut(s)	493, 621, 1566, 1569, 1755
BlsI	GCNGC	5 cut(s)	494, 622, 1567, 1570, 1756
Bme1390I	CCNGG	4 cut(s)	332, 1046, 1398, 1544
Bme18I	GGWCC	2 cut(s)	328, 1606
BmgBI	CACGTC	1 cut(s)	542
BmgT120I	GGNCC	2 cut(s)	328, 1606
BmiI	GGNNCC	4 cut(s)	253, 660, 866, 1384
BmrFI	CCNGG	4 cut(s)	332, 1046, 1398, 1544
BmsI	GCATC	2 cut(s)	524, 1575
BpiI	GAAGAC	3 cut(s)	73, 408, 747
BpmI	CTGGAG	2 cut(s)	402, 750
BpuEI	CTTGAG	1 cut(s)	772
BpuMI	CCSGG	2 cut(s)	1398, 1544
BsaBI	GATNNNNATC	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	1175
BsaJI	CCNNGG	7 cut(s)	496, 586, 796, 1044, 1126, 1461, 1636
BsaWI	WCCGGW	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 325, 556, 1718
Bse1I	ACTGG	2 cut(s)	1360, 1386
Bse8I	GATNNNNATC	1 cut(s)	530
BseAI	TCCGGA	1 cut(s)	556
BseBI	CCWGG	2 cut(s)	332, 1046
BseDI	CCNNGG	7 cut(s)	496, 586, 796, 1044, 1126, 1461, 1636
BseGI	GGATG	5 cut(s)	340, 955, 974, 1144, 1356
BseJI	GATNNNNATC	1 cut(s)	530
BseLI	CCNNNNNNNGG	4 cut(s)	167, 325, 556, 1718
BseMII	CTCAG	3 cut(s)	142, 236, 845
BseNI	ACTGG	2 cut(s)	1360, 1386
BseRI	GAGGAG	1 cut(s)	1833
BseSI	GKGCMC	1 cut(s)	869
BseXI	GCAGC	5 cut(s)	504, 607, 1552, 1555, 1741
BsgI	GTGCAG	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	1248
BshFI	GGCC	4 cut(s)	406, 1125, 1355, 1599
BshNI	GGYRCC	2 cut(s)	864, 1382
BsiHKAI	GWGCWC	2 cut(s)	20, 1327
BsiSI	CCGG	4 cut(s)	557, 1292, 1397, 1543
BslI	CCNNNNNNNGG	4 cut(s)	167, 325, 556, 1718
BsmAI	GTCTC	2 cut(s)	1166, 1817
BsmBI	CGTCTC	1 cut(s)	1166
BsnI	GGCC	4 cut(s)	406, 1125, 1355, 1599
Bsp1286I	GDGCHC	4 cut(s)	20, 594, 869, 1327
Bsp13I	TCCGGA	1 cut(s)	556
Bsp19I	CCATGG	2 cut(s)	1461, 1636
BspACI	CCGC	2 cut(s)	756, 931
BspANI	GGCC	4 cut(s)	406, 1125, 1355, 1599
BspCNI	CTCAG	3 cut(s)	141, 235, 846
BspEI	TCCGGA	1 cut(s)	556
BspFNI	CGCG	1 cut(s)	1248
BspHI	TCATGA	1 cut(s)	1164
BspLI	GGNNCC	4 cut(s)	253, 660, 866, 1384
BspMAI	CTGCAG	2 cut(s)	494, 914
BspPI	GGATC	2 cut(s)	1073, 1627
BspT107I	GGYRCC	2 cut(s)	864, 1382
BsrBI	CCGCTC	1 cut(s)	756
BsrI	ACTGG	2 cut(s)	1360, 1386
BssECI	CCNNGG	7 cut(s)	496, 586, 796, 1044, 1126, 1461, 1636
BssNI	GRCGYC	1 cut(s)	1175
BssT1I	CCWWGG	2 cut(s)	1461, 1636
Bst2UI	CCWGG	2 cut(s)	332, 1046
Bst4CI	ACNGT	6 cut(s)	424, 714, 892, 920, 1192, 1420
Bst6I	CTCTTC	1 cut(s)	395
BstACI	GRCGYC	1 cut(s)	1175
BstC8I	GCNNGC	3 cut(s)	828, 933, 1709
BstDEI	CTNAG	3 cut(s)	128, 222, 854
BstDSI	CCRYGG	5 cut(s)	496, 796, 1126, 1461, 1636
BstF5I	GGATG	5 cut(s)	340, 955, 974, 1144, 1356
BstFNI	CGCG	1 cut(s)	1248
BstHHI	GCGC	1 cut(s)	1250
BstMAI	GTCTC	2 cut(s)	1166, 1817
BstMWI	GCNNNNNNNGC	1 cut(s)	1792
BstNI	CCWGG	2 cut(s)	332, 1046
BstNSI	RCATGY	2 cut(s)	805, 1711
BstSCI	CCNGG	4 cut(s)	330, 1044, 1396, 1542
BstSFI	CTRYAG	3 cut(s)	490, 910, 1188
BstSLI	GKGCMC	1 cut(s)	869
BstUI	CGCG	1 cut(s)	1248
BstV1I	GCAGC	5 cut(s)	504, 607, 1552, 1555, 1741
BstV2I	GAAGAC	3 cut(s)	73, 408, 747
BstX2I	RGATCY	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	719
BsuI	GTATCC	1 cut(s)	1192
BsuRI	GGCC	4 cut(s)	406, 1125, 1355, 1599
BtgI	CCRYGG	5 cut(s)	496, 796, 1126, 1461, 1636
BtrI	CACGTC	1 cut(s)	542
BtsCI	GGATG	5 cut(s)	340, 955, 974, 1144, 1356
BtsI	GCAGTG	2 cut(s)	85, 1313
BtsIMutI	CAGTG	5 cut(s)	85, 230, 429, 916, 1313
Cac8I	GCNNGC	3 cut(s)	828, 933, 1709
CaiI	CAGNNNCTG	2 cut(s)	918, 1795
CciI	TCATGA	1 cut(s)	1164
CfoI	GCGC	1 cut(s)	1250
Cfr13I	GGNCC	2 cut(s)	328, 1606
CseI	GACGC	1 cut(s)	1775
Csp6I	GTAC	2 cut(s)	1383, 1814
CviQI	GTAC	2 cut(s)	1383, 1814
DdeI	CTNAG	3 cut(s)	128, 222, 854
EaeI	YGGCCR	1 cut(s)	1123
Eam1104I	CTCTTC	1 cut(s)	395
EarI	CTCTTC	1 cut(s)	395
Ecl136II	GAGCTC	2 cut(s)	18, 1325
Eco130I	CCWWGG	2 cut(s)	1461, 1636
Eco147I	AGGCCT	1 cut(s)	406
Eco24I	GRGCYC	3 cut(s)	20, 594, 1327
Eco32I	GATATC	3 cut(s)	532, 1297, 1695
Eco47I	GGWCC	2 cut(s)	328, 1606
Eco53kI	GAGCTC	2 cut(s)	18, 1325
Eco57I	CTGAAG	2 cut(s)	155, 1598
EcoICRI	GAGCTC	2 cut(s)	18, 1325
EcoRII	CCWGG	2 cut(s)	330, 1044
EcoRV	GATATC	3 cut(s)	532, 1297, 1695
EcoT14I	CCWWGG	2 cut(s)	1461, 1636
EcoT22I	ATGCAT	1 cut(s)	1590
EcoT38I	GRGCYC	3 cut(s)	20, 594, 1327
ErhI	CCWWGG	2 cut(s)	1461, 1636
Esp3I	CGTCTC	1 cut(s)	1166
FauI	CCCGC	1 cut(s)	924
FbaI	TGATCA	4 cut(s)	1212, 1348, 1404, 1777
FblI	GTMKAC	1 cut(s)	1018
Fnu4HI	GCNGC	5 cut(s)	493, 621, 1566, 1569, 1755
FokI	GGATG	5 cut(s)	347, 962, 981, 1151, 1343
FriOI	GRGCYC	3 cut(s)	20, 594, 1327
Fsp4HI	GCNGC	5 cut(s)	493, 621, 1566, 1569, 1755
FspBI	CTAG	6 cut(s)	1014, 1319, 1553, 1614, 1682, 1837
GlaI	GCGC	1 cut(s)	1249
GluI	GCNGC	5 cut(s)	493, 621, 1566, 1569, 1755
GsuI	CTGGAG	2 cut(s)	402, 750
HaeIII	GGCC	4 cut(s)	406, 1125, 1355, 1599
HapII	CCGG	4 cut(s)	557, 1292, 1397, 1543
HgaI	GACGC	1 cut(s)	1775
HhaI	GCGC	1 cut(s)	1250
Hin1I	GRCGYC	1 cut(s)	1175
Hin6I	GCGC	1 cut(s)	1248
HinP1I	GCGC	1 cut(s)	1248
HinfI	GANTC	4 cut(s)	218, 315, 628, 924
HpaII	CCGG	4 cut(s)	557, 1292, 1397, 1543
HphI	GGTGA	2 cut(s)	700, 1386
Hpy166II	GTNNAC	4 cut(s)	233, 328, 1019, 1394
Hpy188I	TCNGA	7 cut(s)	135, 294, 483, 587, 1404, 1610, 1791
Hpy8I	GTNNAC	4 cut(s)	233, 328, 1019, 1394
Hpy99I	CGWCG	1 cut(s)	546
HpyAV	CCTTC	3 cut(s)	81, 838, 1573
HpyCH4III	ACNGT	6 cut(s)	424, 714, 892, 920, 1192, 1420
HpyCH4IV	ACGT	2 cut(s)	541, 1175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1792
HpyF3I	CTNAG	3 cut(s)	128, 222, 854
HpySE526I	ACGT	2 cut(s)	541, 1175
Hsp92I	GRCGYC	1 cut(s)	1175
HspAI	GCGC	1 cut(s)	1248
Kpn2I	TCCGGA	1 cut(s)	556
KpnI	GGTACC	1 cut(s)	1386
Ksp22I	TGATCA	4 cut(s)	1212, 1348, 1404, 1777
LmnI	GCTCC	2 cut(s)	342, 1322
Lsp1109I	GCAGC	5 cut(s)	504, 607, 1552, 1555, 1741
LweI	GCATC	2 cut(s)	524, 1575
MaeI	CTAG	6 cut(s)	1014, 1319, 1553, 1614, 1682, 1837
MaeII	ACGT	2 cut(s)	541, 1175
MaeIII	GTNAC	6 cut(s)	504, 880, 1090, 1195, 1362, 1747
MbiI	CCGCTC	1 cut(s)	756
MflI	RGATCY	1 cut(s)	719
MhlI	GDGCHC	4 cut(s)	20, 594, 869, 1327
MluCI	AATT	8 cut(s)	153, 389, 552, 817, 1006, 1282, 1509, 1722
MlyI	GAGTC	1 cut(s)	324
MmeI	TCCRAC	2 cut(s)	120, 427
Mph1103I	ATGCAT	1 cut(s)	1590
MroI	TCCGGA	1 cut(s)	556
MseI	TTAA	7 cut(s)	200, 597, 716, 1005, 1376, 1730, 1832
MslI	CAYNNNNRTG	3 cut(s)	644, 686, 1163
MspI	CCGG	4 cut(s)	557, 1292, 1397, 1543
MspR9I	CCNGG	4 cut(s)	332, 1046, 1398, 1544
MvaI	CCWGG	2 cut(s)	332, 1046
MvnI	CGCG	1 cut(s)	1248
MwoI	GCNNNNNNNGC	1 cut(s)	1792
NciI	CCSGG	2 cut(s)	1398, 1544
NcoI	CCATGG	2 cut(s)	1461, 1636
NlaIV	GGNNCC	4 cut(s)	253, 660, 866, 1384
NsiI	ATGCAT	1 cut(s)	1590
NspI	RCATGY	2 cut(s)	805, 1711
PaeI	GCATGC	1 cut(s)	1711
PagI	TCATGA	1 cut(s)	1164
PceI	AGGCCT	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	218, 628, 924
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	5 cut(s)	494, 622, 1567, 1570, 1756
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
Psp124BI	GAGCTC	2 cut(s)	20, 1327
Psp6I	CCWGG	2 cut(s)	330, 1044
PspGI	CCWGG	2 cut(s)	330, 1044
PspN4I	GGNNCC	4 cut(s)	253, 660, 866, 1384
PspPI	GGNCC	2 cut(s)	328, 1606
PsrI	GAACNNNNNNTAC	2 cut(s)	1375, 1407
PstI	CTGCAG	2 cut(s)	494, 914
PstNI	CAGNNNCTG	2 cut(s)	918, 1795
PsuI	RGATCY	1 cut(s)	719
RsaI	GTAC	2 cut(s)	1384, 1815
RsaNI	GTAC	2 cut(s)	1383, 1814
RseI	CAYNNNNRTG	3 cut(s)	644, 686, 1163
SacI	GAGCTC	2 cut(s)	20, 1327
SaqAI	TTAA	7 cut(s)	200, 597, 716, 1005, 1376, 1730, 1832
SatI	GCNGC	5 cut(s)	493, 621, 1566, 1569, 1755
Sau96I	GGNCC	2 cut(s)	328, 1606
SchI	GAGTC	1 cut(s)	324
ScrFI	CCNGG	4 cut(s)	332, 1046, 1398, 1544
SduI	GDGCHC	4 cut(s)	20, 594, 869, 1327
SfaNI	GCATC	2 cut(s)	524, 1575
SfcI	CTRYAG	3 cut(s)	490, 910, 1188
SinI	GGWCC	2 cut(s)	328, 1606
SmiMI	CAYNNNNRTG	3 cut(s)	644, 686, 1163
SmlI	CTYRAG	1 cut(s)	751
SmoI	CTYRAG	1 cut(s)	751
SpeI	ACTAGT	1 cut(s)	1013
SphI	GCATGC	1 cut(s)	1711
Sse9I	AATT	8 cut(s)	153, 389, 552, 817, 1006, 1282, 1509, 1722
SseBI	AGGCCT	1 cut(s)	406
SsiI	CCGC	2 cut(s)	756, 931
SspI	AATATT	1 cut(s)	1207
SspMI	CTAG	6 cut(s)	1014, 1319, 1553, 1614, 1682, 1837
SstI	GAGCTC	2 cut(s)	20, 1327
StuI	AGGCCT	1 cut(s)	406
StyD4I	CCNGG	4 cut(s)	330, 1044, 1396, 1542
StyI	CCWWGG	2 cut(s)	1461, 1636
TaaI	ACNGT	6 cut(s)	424, 714, 892, 920, 1192, 1420
TaiI	ACGT	2 cut(s)	544, 1178
TaqI	TCGA	3 cut(s)	544, 900, 1077
TasI	AATT	8 cut(s)	153, 389, 552, 817, 1006, 1282, 1509, 1722
TfiI	GAWTC	3 cut(s)	218, 628, 924
Tru1I	TTAA	7 cut(s)	200, 597, 716, 1005, 1376, 1730, 1832
Tru9I	TTAA	7 cut(s)	200, 597, 716, 1005, 1376, 1730, 1832
TscAI	CASTG	5 cut(s)	92, 230, 429, 923, 1320
TseI	GCWGC	5 cut(s)	492, 620, 1565, 1568, 1754
TspDTI	ATGAA	7 cut(s)	336, 351, 1043, 1155, 1164, 1181, 1521
TspGWI	ACGGA	3 cut(s)	67, 785, 1036
TspRI	CASTG	5 cut(s)	92, 230, 429, 923, 1320
Van91I	CCANNNNNTGG	1 cut(s)	325
VpaK11BI	GGWCC	2 cut(s)	328, 1606
XapI	RAATTY	3 cut(s)	552, 817, 1722
XbaI	TCTAGA	1 cut(s)	1681
XceI	RCATGY	2 cut(s)	805, 1711
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1118
XmiI	GTMKAC	1 cut(s)	1018
XspI	CTAG	6 cut(s)	1014, 1319, 1553, 1614, 1682, 1837
ZraI	GACGTC	1 cut(s)	1176
Zsp2I	ATGCAT	1 cut(s)	1590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.