Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007357.1

Orthogroup ID

OG0008347

Physical Location & Seq

Genomic Coordinates Reverse (-)

15331 .. 15900

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007357.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgatttctcaaaattgttcgccagatatcgtaacctataacacactgctgggagctctttgcagggagggaatgattgatcaggccatacagttacttgaacttttaagtggtaccagttgttcaccgggtctgatcacttacaatactgtgattgatggattggctaaatcggggtctatggaaaaagccatgggattgtatggccaaatggtagaaaatggtatcattcctgatgaaattacccatcgttctttggttggtggcttttgccgggcaaatctagttgaggaagctgctgctatactgaaggagatgcataaacgaggccaccaggtccgaactagctctttcaagtatgtgatccatggattatgtagaaacaataaggtggatattgcaatacaagttctagaattgatgatatcaaatcggtgcatgccagatgagggaatttattcaactatactcaaaggtgtaactgctgctggtatgacaaaagaggctgatcagttgcgtcagaagctgattgaatggaatgttgtacgagaagagaccatgttaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

189

Amino Acids

20.82

Weight (kDa)

5.82

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08610
fragaria_vesca	FvH4_6g01910 FvH4_6g01910 FvH4_6g01910 FvH4_6g01910 FvH4_6g01910
malus_domestica	MD04G1230200.v1.1
prunus_persica	Prupe.6G350100_v2.0.a1 Prupe.6G350100_v2.0.a1 Prupe.6G350100_v2.0.a1 Prupe.6G350100_v2.0.a1
pyrus_communis	pycom04g20410
rosa_chinensis	RchiOBHm_Chr3g0449641
rosa_laevigata	RLG00000025812
rosa_multiflora	Rmu_sc0007357.1_g000003 Rmu_sc0009629.1_g000014
rosa_roxburghii	Rroxscaffold_6G00427540
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh3AG020500 Rh3BG021200 Rh3CG019700 Rh3DG021000
rosa_wichuraiana	Rw3G001690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	113
AccB1I	GGYRCC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	358
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	453
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	115, 546
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	4 cut(s)	101, 355, 462, 533
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	4 cut(s)	56, 296, 348, 526
AluI	AGCT	4 cut(s)	56, 296, 348, 526
Alw21I	GWGCWC	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	1 cut(s)	358
AlwNI	CAGNNNCTG	1 cut(s)	526
AoxI	GGCC	3 cut(s)	84, 205, 328
ApeKI	GCWGC	3 cut(s)	296, 299, 485
ApoI	RAATTY	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	457
Asp718I	GGTACC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	337
AsuC2I	CCSGG	2 cut(s)	129, 275
AsuHPI	GGTGA	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	337
BalI	TGGCCA	1 cut(s)	207
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	3 cut(s)	283, 286, 472
BccI	CCATC	2 cut(s)	152, 255
BciT130I	CCWGG	1 cut(s)	335
BclI	TGATCA	3 cut(s)	79, 135, 508
BcnI	CCSGG	2 cut(s)	129, 275
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	4 cut(s)	284, 345, 413, 568
BisI	GCNGC	3 cut(s)	297, 300, 486
BlsI	GCNGC	3 cut(s)	298, 301, 487
Bme1390I	CCNGG	3 cut(s)	129, 275, 335
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	3 cut(s)	129, 275, 335
BmsI	GCATC	1 cut(s)	306
BpuMI	CCSGG	2 cut(s)	129, 275
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	192, 367
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	192, 367
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseNI	ACTGG	1 cut(s)	117
BseXI	GCAGC	3 cut(s)	283, 286, 472
BseYI	CCCAGC	1 cut(s)	49
BshFI	GGCC	3 cut(s)	86, 207, 330
BshNI	GGYRCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	58
BsiSI	CCGG	2 cut(s)	128, 274
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmAI	GTCTC	1 cut(s)	548
BsnI	GGCC	3 cut(s)	86, 207, 330
Bso31I	GGTCTC	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	4 cut(s)	79, 135, 363, 508
Bsp19I	CCATGG	2 cut(s)	192, 367
BspANI	GGCC	3 cut(s)	86, 207, 330
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	548
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	192, 367
BssMI	GATC	4 cut(s)	79, 135, 363, 508
BssT1I	CCWWGG	2 cut(s)	192, 367
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	93, 151
Bst6I	CTCTTC	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	440
BstDSI	CCRYGG	2 cut(s)	192, 367
BstKTI	GATC	4 cut(s)	82, 138, 366, 511
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	4 cut(s)	79, 135, 363, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	523
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	442
BstSCI	CCNGG	3 cut(s)	127, 273, 333
BstV1I	GCAGC	3 cut(s)	283, 286, 472
BsuRI	GGCC	3 cut(s)	86, 207, 330
BtgI	CCRYGG	2 cut(s)	192, 367
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	440
CaiI	CAGNNNCTG	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	337
CseI	GACGC	1 cut(s)	506
CsiI	ACCWGGT	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	114, 545
CviAII	CATG	4 cut(s)	193, 368, 439, 559
CviQI	GTAC	2 cut(s)	114, 545
DpnI	GATC	4 cut(s)	81, 137, 365, 510
DpnII	GATC	4 cut(s)	79, 135, 363, 508
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	192, 367
Eco24I	GRGCYC	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	548
Eco32I	GATATC	2 cut(s)	28, 426
Eco47I	GGWCC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	329
EcoICRI	GAGCTC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	333
EcoRV	GATATC	2 cut(s)	28, 426
EcoT14I	CCWWGG	2 cut(s)	192, 367
EcoT22I	ATGCAT	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	2 cut(s)	192, 367
FaeI	CATG	4 cut(s)	196, 371, 442, 562
FatI	CATG	4 cut(s)	192, 367, 438, 558
FbaI	TGATCA	3 cut(s)	79, 135, 508
Fnu4HI	GCNGC	3 cut(s)	297, 300, 486
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	3 cut(s)	297, 300, 486
FspBI	CTAG	4 cut(s)	284, 345, 413, 568
GluI	GCNGC	3 cut(s)	297, 300, 486
GsaI	CCCAGC	1 cut(s)	53
HaeIII	GGCC	3 cut(s)	86, 207, 330
HapII	CCGG	2 cut(s)	128, 274
HgaI	GACGC	1 cut(s)	506
Hin1II	CATG	4 cut(s)	196, 371, 442, 562
HpaII	CCGG	2 cut(s)	128, 274
HphI	GGTGA	1 cut(s)	117
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	3 cut(s)	135, 341, 522
Hpy188III	TCNNGA	2 cut(s)	233, 413
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	2 cut(s)	93, 151
HpyCH4V	TGCA	4 cut(s)	63, 319, 401, 438
HpyF10VI	GCNNNNNNNGC	1 cut(s)	523
Hsp92II	CATG	4 cut(s)	196, 371, 442, 562
KpnI	GGTACC	1 cut(s)	117
Ksp22I	TGATCA	3 cut(s)	79, 135, 508
Kzo9I	GATC	4 cut(s)	79, 135, 363, 508
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	3 cut(s)	283, 286, 472
LweI	GCATC	1 cut(s)	306
MabI	ACCWGGT	1 cut(s)	333
MaeI	CTAG	4 cut(s)	284, 345, 413, 568
MaeIII	GTNAC	3 cut(s)	31, 93, 478
MalI	GATC	4 cut(s)	81, 137, 365, 510
MboI	GATC	4 cut(s)	79, 135, 363, 508
MboII	GAAGA	1 cut(s)	563
MhlI	GDGCHC	1 cut(s)	58
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	4 cut(s)	13, 240, 416, 453
MluNI	TGGCCA	1 cut(s)	207
MnlI	CCTC	5 cut(s)	61, 283, 320, 442, 496
Mox20I	TGGCCA	1 cut(s)	207
Mph1103I	ATGCAT	1 cut(s)	321
MroXI	GAANNNNTTC	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	2 cut(s)	107, 563
Msp20I	TGGCCA	1 cut(s)	207
MspI	CCGG	2 cut(s)	128, 274
MspR9I	CCNGG	3 cut(s)	129, 275, 335
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	523
NciI	CCSGG	2 cut(s)	129, 275
NcoI	CCATGG	2 cut(s)	192, 367
NdeII	GATC	4 cut(s)	79, 135, 363, 508
NlaIII	CATG	4 cut(s)	196, 371, 442, 562
NlaIV	GGNNCC	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	321
NspI	RCATGY	1 cut(s)	442
PaeI	GCATGC	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	457
PkrI	GCNGC	3 cut(s)	298, 301, 487
Psp124BI	GAGCTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	337
PsrI	GAACNNNNNNTAC	2 cut(s)	106, 138
PstNI	CAGNNNCTG	1 cut(s)	526
RsaI	GTAC	2 cut(s)	115, 546
RsaNI	GTAC	2 cut(s)	114, 545
SacI	GAGCTC	1 cut(s)	58
SaqAI	TTAA	2 cut(s)	107, 563
SatI	GCNGC	3 cut(s)	297, 300, 486
Sau3AI	GATC	4 cut(s)	79, 135, 363, 508
Sau96I	GGNCC	1 cut(s)	337
ScrFI	CCNGG	3 cut(s)	129, 275, 335
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	8 cut(s)	38, 58, 298, 339, 350, 393, 478, 528
SexAI	ACCWGGT	1 cut(s)	333
SfaNI	GCATC	1 cut(s)	306
SinI	GGWCC	1 cut(s)	337
SphI	GCATGC	1 cut(s)	442
Sse9I	AATT	4 cut(s)	13, 240, 416, 453
SspMI	CTAG	4 cut(s)	284, 345, 413, 568
SstI	GAGCTC	1 cut(s)	58
StyD4I	CCNGG	3 cut(s)	127, 273, 333
StyI	CCWWGG	2 cut(s)	192, 367
TaaI	ACNGT	2 cut(s)	93, 151
TasI	AATT	4 cut(s)	13, 240, 416, 453
Tru1I	TTAA	2 cut(s)	107, 563
Tru9I	TTAA	2 cut(s)	107, 563
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	3 cut(s)	296, 299, 485
TspDTI	ATGAA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	337
XapI	RAATTY	1 cut(s)	453
XbaI	TCTAGA	1 cut(s)	412
XceI	RCATGY	1 cut(s)	442
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	4 cut(s)	284, 345, 413, 568
Zsp2I	ATGCAT	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.