Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0015701

Physical Location & Seq

Genomic Coordinates Forward (+)

1174584 .. 1175958

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G008400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATTCCAACGGTGAAGTCGTTAGCATTATACGTTCTTATGAGGATTTCATGCCTTACTGCAAGTTCCAAAGAGAGGAACGATACGATACATACCAGATTCCTCTCCATGGTTTCAAGATTGCGCAATTCAATGTATGCTTGAATGAGGAGAAAGAGACCATAAACATTGAAGGCCAACGTCCTGTGGATGGAACCAGATGGATTCGTTTCCGCCAAGAATTCAAAGTGCCTTGTGATGTTTATAACACCAAGGATATTCATGCAAGGTTTGGTTATGGCGTTCTTTCCATAAGGCTGCCAAAAAAGAAACCTTCAAATGACGCATCTGATTCAGTTGTCAACAAAAGTTTGCTTTCGAGGCTGAAAACTAGTAAAATGGCGATCCTGAGAATTGCAATAGCTGTTGTTGTGGGCGTGGCTGTTGGAGGTTACGTAATCTTCAAATGCTTTCCATCTAAGCACGCTATTGAGAAGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

161

Amino Acids

18.39

Weight (kDa)

9.28

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015701)

Species	Orthologous Gene IDs
malus_domestica	MD14G1005100.v1.1 MD14G1005200.v1.1
prunus_persica	Prupe.7G008400_v2.0.a1
pyrus_communis	pycom14g00340 pycom14g00350 pycom14g00360 pycom14g00370
rosa_chinensis	RchiOBHm_Chr3g0496541
rosa_laevigata	RLG00000022520
rosa_multiflora	Rmu_sc0000741.1_g000008
rosa_roxburghii	Rroxscaffold_6G00388950
rosa_rugosa	Rorug03G0283900
rosa_samantha	Rh3BG365300 Rh3CG362600 Rh3DG365700
rosa_wichuraiana	Rw3G028840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	246
Acc16I	TGCGCA	1 cut(s)	126
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	1 cut(s)	379
AcsI	RAATTY	1 cut(s)	221
AfiI	CCNNNNNNNGG	3 cut(s)	76, 110, 191
AgsI	TTSAA	7 cut(s)	118, 133, 145, 173, 226, 318, 445
AhlI	ACTAGT	1 cut(s)	371
AluBI	AGCT	1 cut(s)	404
AluI	AGCT	1 cut(s)	404
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	379
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	3 cut(s)	185, 195, 463
BcoDI	GTCTC	1 cut(s)	152
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	1 cut(s)	372
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	196
BmsI	GCATC	1 cut(s)	335
BsaAI	YACGTR	1 cut(s)	436
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	109, 252
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 110, 191
BseDI	CCNNGG	2 cut(s)	109, 252
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	3 cut(s)	76, 110, 191
BseMII	CTCAG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	285
BshFI	GGCC	1 cut(s)	177
BslI	CCNNNNNNNGG	3 cut(s)	76, 110, 191
BsmAI	GTCTC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	384
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	381
BspLI	GGNNCC	1 cut(s)	196
BspPI	GGATC	1 cut(s)	379
BspTNI	GGTCTC	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	109, 252
BssMI	GATC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	109, 252
Bst4CI	ACNGT	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	436
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	2 cut(s)	389, 459
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	1 cut(s)	361
BstSNI	TACGTA	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	465
CfoI	GCGC	1 cut(s)	127
CseI	GACGC	1 cut(s)	332
CviAII	CATG	3 cut(s)	52, 110, 263
CviJI	RGCY	5 cut(s)	177, 298, 364, 404, 422
CviKI_1	RGCY	5 cut(s)	177, 298, 364, 404, 422
DdeI	CTNAG	2 cut(s)	389, 459
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
EciI	GGCGGA	1 cut(s)	203
Eco105I	TACGTA	1 cut(s)	436
Eco130I	CCWWGG	2 cut(s)	109, 252
Eco31I	GGTCTC	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	221
EcoT14I	CCWWGG	2 cut(s)	109, 252
ErhI	CCWWGG	2 cut(s)	109, 252
FaeI	CATG	3 cut(s)	55, 113, 266
FatI	CATG	3 cut(s)	51, 109, 262
Fnu4HI	GCNGC	1 cut(s)	299
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	299
FspBI	CTAG	1 cut(s)	372
FspI	TGCGCA	1 cut(s)	126
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	177
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	1 cut(s)	127
Hin1II	CATG	3 cut(s)	55, 113, 266
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	4 cut(s)	5, 100, 205, 332
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	2 cut(s)	118, 388
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	2 cut(s)	167, 324
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	3 cut(s)	34, 181, 435
HpyCH4V	TGCA	3 cut(s)	63, 266, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	361
HpyF3I	CTNAG	2 cut(s)	389, 459
HpySE526I	ACGT	3 cut(s)	34, 181, 435
Hsp92II	CATG	3 cut(s)	55, 113, 266
HspAI	GCGC	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	384
LpnPI	CCDG	4 cut(s)	110, 198, 211, 401
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	1 cut(s)	335
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	3 cut(s)	34, 181, 435
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	1 cut(s)	433
MluCI	AATT	3 cut(s)	128, 221, 393
MmeI	TCCRAC	2 cut(s)	33, 406
MnlI	CCTC	6 cut(s)	37, 70, 114, 142, 354, 422
MwoI	GCNNNNNNNGC	1 cut(s)	361
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	3 cut(s)	55, 113, 266
NlaIV	GGNNCC	1 cut(s)	196
NsbI	TGCGCA	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PfeI	GAWTC	4 cut(s)	5, 100, 205, 332
PkrI	GCNGC	1 cut(s)	300
Ppu21I	YACGTR	1 cut(s)	436
PsiI	TTATAA	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	196
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	1 cut(s)	384
SetI	ASST	7 cut(s)	37, 184, 272, 316, 406, 433, 438
SfaNI	GCATC	1 cut(s)	335
SnaBI	TACGTA	1 cut(s)	436
SpeI	ACTAGT	1 cut(s)	371
Sse9I	AATT	3 cut(s)	128, 221, 393
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	372
StyI	CCWWGG	2 cut(s)	109, 252
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	3 cut(s)	37, 184, 438
TaqI	TCGA	1 cut(s)	359
TasI	AATT	3 cut(s)	128, 221, 393
TfiI	GAWTC	4 cut(s)	5, 100, 205, 332
TseI	GCWGC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	40, 251
XapI	RAATTY	1 cut(s)	221
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.