Rmu_sc0000741.1_g000008

response to heat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000741.1
OG0015701
Physical Location & Seq
Reverse (-)
26077 .. 35741
9665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000741.1_g000008.1.cds

Sequence Viewer

Length: 1131 bp
atggatgagagaagtggtgctccgacattgggtggagaacggtcggaggtggaggaggaggaggaggaggagagtcgtcaggtgctggtcggagccgaggatgaggaagaggagagcagcttttcattcccatatatggattccaatagtgaagtggttaccatcgtacgatcttatgaggatttcatgccttattgcaagctccaaaaagaagaaatacgtgacacttaccagattcctctccatggtttcaagattgaacaattcaaggtctgtgttaacgacaagaaaggaacgataaagattgaaggcgaacgtcctatggatggaaatagatggagccgcttccgccaaagtttcaaggcttctcctgatgtttatagagtcaaggatatttctgcaaggtttcagaatggtgttctttctctaatattaccaaaaaccaaactttcaaatgatcacacatctaatcgatttccgtttgcgaacacgagtttgcttctgaggattgcaccagctcttgttgtgatggtcgctgttggagccggaggggattttgcttcgatccgtggttttccggccaaatcgtggaaaaccaaggttgctagggtgctcggagggaggaggcgctcctctggtgaccggtggcacgccggttggtggtcggaatcgccggaaatcggagggagaaaggaaagggtcgaaccggagaagagagagctcggggggaaggagagagaaaggggaagggtccagcccgatcccgatctcggcttggagaaatctccgctccggttgtcgtcgtcgtcgtcctcaatggtgtttttcgatgaccctctccgaccaaacatggtagattgttgttcttctggttcttgtttgtcttcggattatgaatttgtggattgggagaggaagaagcgattgagtttcgagtttgggttgagaggtggcggtggaggaattgcggttgagaatccaatcagtggctttaagagtggagttgccaccagtggtggcgaggtctatagggaagccagaggtctatggcggaacccagaaagatccttctttgaggagttaaacggcactattttacaagcatatgttctgaggattgatgggatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

376

Amino Acids

42.31

Weight (kDa)

5.77

Isoelectric Point (pI)

60.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015701)

Species Orthologous Gene IDs
malus_domestica MD14G1005100.v1.1 MD14G1005200.v1.1
prunus_persica Prupe.7G008400_v2.0.a1
pyrus_communis pycom14g00340 pycom14g00350 pycom14g00360 pycom14g00370
rosa_chinensis RchiOBHm_Chr3g0496541
rosa_laevigata RLG00000022520
rosa_multiflora Rmu_sc0000741.1_g000008
rosa_roxburghii Rroxscaffold_6G00388950
rosa_rugosa Rorug03G0283900
rosa_samantha Rh3BG365300 Rh3CG362600 Rh3DG365700
rosa_wichuraiana Rw3G028840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 588, 986
AccBSI CCGCTC 1 cut(s) 790
AciI CCGC 6 cut(s) 343, 349, 788, 954, 968, 1051
AclWI GGATC 3 cut(s) 559, 755, 1059
AcoI YGGCCR 1 cut(s) 579
AcsI RAATTY 1 cut(s) 896
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 9 cut(s) 29, 136, 245, 326, 588, 660, 680, 770, 986
AgeI ACCGGT 1 cut(s) 642
AgsI TTSAA 6 cut(s) 253, 260, 268, 308, 361, 453
AluBI AGCT 4 cut(s) 120, 202, 518, 721
AluI AGCT 4 cut(s) 120, 202, 518, 721
Alw21I GWGCWC 3 cut(s) 22, 615, 723
AlwI GGATC 3 cut(s) 559, 755, 1059
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 722
AoxI GGCC 1 cut(s) 579
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 896
AsiGI ACCGGT 1 cut(s) 642
AspLEI GCGC 1 cut(s) 630
AspS9I GGNCC 1 cut(s) 751
AsuHPI GGTGA 1 cut(s) 650
AvaI CYCGRG 1 cut(s) 722
AvaII GGWCC 1 cut(s) 751
BanII GRGCYC 1 cut(s) 723
BauI CACGAG 1 cut(s) 490
BbsI GAAGAC 1 cut(s) 876
Bbv12I GWGCWC 3 cut(s) 22, 615, 723
BbvI GCAGC 1 cut(s) 129
BccI CCATC 5 cut(s) 170, 320, 330, 523, 1115
BceAI ACGGC 1 cut(s) 1102
BclI TGATCA 1 cut(s) 457
BfaI CTAG 1 cut(s) 606
BfmI CTRYAG 1 cut(s) 1027
BfoI RGCGCY 1 cut(s) 631
BisI GCNGC 2 cut(s) 118, 343
BlsI GCNGC 2 cut(s) 119, 344
Bme18I GGWCC 1 cut(s) 751
BmeT110I CYCGRG 1 cut(s) 722
BmgT120I GGNCC 1 cut(s) 751
BmiI GGNNCC 5 cut(s) 94, 341, 544, 752, 1055
BpiI GAAGAC 1 cut(s) 876
Bsa29I ATCGAT 1 cut(s) 472
BsaAI YACGTR 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 765
BsaJI CCNNGG 4 cut(s) 96, 244, 568, 597
BsaWI WCCGGW 3 cut(s) 642, 706, 792
Bsc4I CCNNNNNNNGG 9 cut(s) 29, 136, 245, 326, 588, 660, 680, 770, 986
Bse118I RCCGGY 2 cut(s) 642, 653
Bse1I ACTGG 1 cut(s) 1011
Bse8I GATNNNNATC 1 cut(s) 765
BseCI ATCGAT 1 cut(s) 472
BseDI CCNNGG 4 cut(s) 96, 244, 568, 597
BseGI GGATG 3 cut(s) 10, 106, 331
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 9 cut(s) 29, 136, 245, 326, 588, 660, 680, 770, 986
BseMII CTCAG 2 cut(s) 494, 1103
BseNI ACTGG 1 cut(s) 1011
BseXI GCAGC 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 581
BshTI ACCGGT 1 cut(s) 642
BshVI ATCGAT 1 cut(s) 472
BsiEI CGRYCG 1 cut(s) 44
BsiHKAI GWGCWC 3 cut(s) 22, 615, 723
BsiHKCI CYCGRG 1 cut(s) 722
BsiSI CCGG 7 cut(s) 546, 578, 643, 654, 674, 707, 793
BsiWI CGTACG 1 cut(s) 166
BslI CCNNNNNNNGG 9 cut(s) 29, 136, 245, 326, 588, 660, 680, 770, 986
BsnI GGCC 1 cut(s) 581
BsoBI CYCGRG 1 cut(s) 722
Bsp1286I GDGCHC 3 cut(s) 22, 615, 723
Bsp143I GATC 6 cut(s) 170, 457, 564, 760, 766, 1064
Bsp19I CCATGG 1 cut(s) 244
BspACI CCGC 6 cut(s) 343, 349, 788, 954, 968, 1051
BspANI GGCC 1 cut(s) 581
BspCNI CTCAG 2 cut(s) 495, 1104
BspDI ATCGAT 1 cut(s) 472
BspLI GGNNCC 5 cut(s) 94, 341, 544, 752, 1055
BspPI GGATC 3 cut(s) 559, 755, 1059
BsrBI CCGCTC 1 cut(s) 790
BsrFI RCCGGY 2 cut(s) 642, 653
BsrI ACTGG 1 cut(s) 1011
BssAI RCCGGY 2 cut(s) 642, 653
BssECI CCNNGG 4 cut(s) 96, 244, 568, 597
BssMI GATC 6 cut(s) 170, 457, 564, 760, 766, 1064
BssSI CACGAG 1 cut(s) 490
BssT1I CCWWGG 2 cut(s) 244, 597
Bst2BI CACGAG 1 cut(s) 490
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 2 cut(s) 102, 707
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 200, 651
BstDEI CTNAG 2 cut(s) 503, 1112
BstDSI CCRYGG 2 cut(s) 244, 568
BstEII GGTNACC 2 cut(s) 157, 638
BstF5I GGATG 3 cut(s) 10, 106, 331
BstH2I RGCGCY 1 cut(s) 631
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 6 cut(s) 173, 460, 567, 763, 769, 1067
BstMBI GATC 6 cut(s) 170, 457, 564, 760, 766, 1064
BstMCI CGRYCG 1 cut(s) 44
BstMWI GCNNNNNNNGC 2 cut(s) 348, 542
BstPI GGTNACC 2 cut(s) 157, 638
BstSFI CTRYAG 1 cut(s) 1027
BstV1I GCAGC 1 cut(s) 129
BstV2I GAAGAC 1 cut(s) 876
BstX2I RGATCY 1 cut(s) 1064
BstYI RGATCY 1 cut(s) 1064
Bsu15I ATCGAT 1 cut(s) 472
BsuRI GGCC 1 cut(s) 581
BsuTUI ATCGAT 1 cut(s) 472
BtgI CCRYGG 2 cut(s) 244, 568
BtsCI GGATG 3 cut(s) 10, 106, 331
BtsIMutI CAGTG 2 cut(s) 991, 1018
Cac8I GCNNGC 2 cut(s) 200, 651
CaiI CAGNNNCTG 1 cut(s) 85
CfoI GCGC 1 cut(s) 630
Cfr10I RCCGGY 2 cut(s) 642, 653
Cfr13I GGNCC 1 cut(s) 751
ClaI ATCGAT 1 cut(s) 472
Csp6I GTAC 1 cut(s) 167
CspAI ACCGGT 1 cut(s) 642
CviAII CATG 3 cut(s) 187, 245, 850
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 2 cut(s) 503, 1112
DpnI GATC 6 cut(s) 172, 459, 566, 762, 768, 1066
DpnII GATC 6 cut(s) 170, 457, 564, 760, 766, 1064
EaeI YGGCCR 1 cut(s) 579
Eam1104I CTCTTC 2 cut(s) 102, 707
EarI CTCTTC 2 cut(s) 102, 707
EciI GGCGGA 2 cut(s) 338, 1066
Ecl136II GAGCTC 1 cut(s) 721
Eco130I CCWWGG 2 cut(s) 244, 597
Eco24I GRGCYC 1 cut(s) 723
Eco47I GGWCC 1 cut(s) 751
Eco53kI GAGCTC 1 cut(s) 721
Eco88I CYCGRG 1 cut(s) 722
Eco91I GGTNACC 2 cut(s) 157, 638
EcoICRI GAGCTC 1 cut(s) 721
EcoO65I GGTNACC 2 cut(s) 157, 638
EcoT14I CCWWGG 2 cut(s) 244, 597
EcoT38I GRGCYC 1 cut(s) 723
ErhI CCWWGG 2 cut(s) 244, 597
FaeI CATG 3 cut(s) 190, 248, 853
FatI CATG 3 cut(s) 186, 244, 849
FauNDI CATATG 1 cut(s) 1105
FbaI TGATCA 1 cut(s) 457
Fnu4HI GCNGC 2 cut(s) 118, 343
FokI GGATG 3 cut(s) 17, 113, 338
FriOI GRGCYC 1 cut(s) 723
Fsp4HI GCNGC 2 cut(s) 118, 343
FspBI CTAG 1 cut(s) 606
GlaI GCGC 1 cut(s) 629
GluI GCNGC 2 cut(s) 118, 343
HaeII RGCGCY 1 cut(s) 631
HaeIII GGCC 1 cut(s) 581
HapII CCGG 7 cut(s) 546, 578, 643, 654, 674, 707, 793
HhaI GCGC 1 cut(s) 630
Hin1II CATG 3 cut(s) 190, 248, 853
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 6 cut(s) 73, 140, 235, 384, 668, 976
HpaI GTTAAC 1 cut(s) 280
HpaII CCGG 7 cut(s) 546, 578, 643, 654, 674, 707, 793
HphI GGTGA 1 cut(s) 650
Hpy166II GTNNAC 1 cut(s) 280
Hpy188III TCNNGA 3 cut(s) 253, 371, 764
Hpy8I GTNNAC 1 cut(s) 280
Hpy99I CGWCG 3 cut(s) 805, 808, 811
HpyAV CCTTC 4 cut(s) 302, 724, 741, 1078
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 2 cut(s) 220, 316
HpyCH4V TGCA 3 cut(s) 198, 401, 512
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 542
HpyF3I CTNAG 2 cut(s) 503, 1112
HpySE526I ACGT 2 cut(s) 220, 316
Hsp92II CATG 3 cut(s) 190, 248, 853
HspAI GCGC 1 cut(s) 628
Ksp22I TGATCA 1 cut(s) 457
KspAI GTTAAC 1 cut(s) 280
Kzo9I GATC 6 cut(s) 170, 457, 564, 760, 766, 1064
LmnI GCTCC 7 cut(s) 25, 92, 207, 339, 542, 635, 795
Lsp1109I GCAGC 1 cut(s) 129
MaeI CTAG 1 cut(s) 606
MaeII ACGT 2 cut(s) 220, 316
MaeIII GTNAC 3 cut(s) 157, 221, 638
MalI GATC 6 cut(s) 172, 459, 566, 762, 768, 1066
MbiI CCGCTC 1 cut(s) 790
MboI GATC 6 cut(s) 170, 457, 564, 760, 766, 1064
MboII GAAGA 6 cut(s) 119, 224, 724, 858, 876, 928
MflI RGATCY 1 cut(s) 1064
MhlI GDGCHC 3 cut(s) 22, 615, 723
MluCI AATT 3 cut(s) 263, 896, 963
MlyI GAGTC 2 cut(s) 82, 393
MmeI TCCRAC 6 cut(s) 24, 47, 70, 520, 645, 865
MseI TTAA 3 cut(s) 279, 993, 1082
MspI CCGG 7 cut(s) 546, 578, 643, 654, 674, 707, 793
MwoI GCNNNNNNNGC 2 cut(s) 348, 542
NcoI CCATGG 1 cut(s) 244
NdeI CATATG 1 cut(s) 1105
NdeII GATC 6 cut(s) 170, 457, 564, 760, 766, 1064
NlaIII CATG 3 cut(s) 190, 248, 853
NlaIV GGNNCC 5 cut(s) 94, 341, 544, 752, 1055
NmeAIII GCCGAG 2 cut(s) 121, 750
NmuCI GTSAC 2 cut(s) 221, 638
PcsI WCGNNNNNNNCGW 1 cut(s) 806
PfeI GAWTC 4 cut(s) 140, 235, 668, 976
Pfl23II CGTACG 1 cut(s) 166
PflMI CCANNNNNTGG 2 cut(s) 588, 986
PinAI ACCGGT 1 cut(s) 642
PkrI GCNGC 2 cut(s) 119, 344
PleI GAGTC 2 cut(s) 81, 392
PpsI GAGTC 2 cut(s) 81, 392
Ppu21I YACGTR 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 723
PspEI GGTNACC 2 cut(s) 157, 638
PspLI CGTACG 1 cut(s) 166
PspN4I GGNNCC 5 cut(s) 94, 341, 544, 752, 1055
PspPI GGNCC 1 cut(s) 751
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 1064
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SacI GAGCTC 1 cut(s) 723
SaqAI TTAA 3 cut(s) 279, 993, 1082
SatI GCNGC 2 cut(s) 118, 343
Sau3AI GATC 6 cut(s) 170, 457, 564, 760, 766, 1064
Sau96I GGNCC 1 cut(s) 751
SchI GAGTC 2 cut(s) 82, 393
SduI GDGCHC 3 cut(s) 22, 615, 723
SfcI CTRYAG 1 cut(s) 1027
SinI GGWCC 1 cut(s) 751
Sse9I AATT 3 cut(s) 263, 896, 963
SsiI CCGC 6 cut(s) 343, 349, 788, 954, 968, 1051
SspI AATATT 1 cut(s) 432
SspMI CTAG 1 cut(s) 606
SstI GAGCTC 1 cut(s) 723
StyI CCWWGG 2 cut(s) 244, 597
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 2 cut(s) 223, 319
TaqI TCGA 5 cut(s) 472, 563, 702, 828, 933
TasI AATT 3 cut(s) 263, 896, 963
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 4 cut(s) 140, 235, 668, 976
Tru1I TTAA 3 cut(s) 279, 993, 1082
Tru9I TTAA 3 cut(s) 279, 993, 1082
TscAI CASTG 2 cut(s) 991, 1018
TseFI GTSAC 2 cut(s) 221, 638
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 2 cut(s) 221, 638
TspDTI ATGAA 3 cut(s) 114, 175, 909
TspGWI ACGGA 2 cut(s) 468, 557
TspRI CASTG 2 cut(s) 991, 1018
Van91I CCANNNNNTGG 2 cut(s) 588, 986
VpaK11BI GGWCC 1 cut(s) 751
XapI RAATTY 1 cut(s) 896
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XspI CTAG 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.