Rroxscaffold_6G00388950

response to heat

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
2342271 .. 2343043
773 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388950.1

Sequence Viewer

Length: 459 bp
ATGGATTCCAATAGTGAAGTGGTTACCATCGTACGATCTTATGAGGATTTCATGCCTTATTGCAAGCTCCAAAAAGAAGAACTACGTGACACTTACCAGATTCCTCTCCATGGTTTCAAGATTGGACAATTCAAGGTCTGTGTTAACGACAAGAAAGGAACGATAAAGATTGAAGGCGAACGTCCTGTGGATGGAAATAGATGGAGTCGCTTCCACCAAAGTTTCAAAGCTTCTCCTGATGTTTATAGAGTCAAGGATATTTCTGCAAGGTTTCAGAATGGTGTTCTTTCTCTAATATTACCAAAAACCAAACCTTCAAATGATCACACATCTAATCGATTTCAGTTTGCGAACACGAGTTTGCTTCTGAGGATTGCACCAGCTCTTGTTGTGATGCTCGCTGTTGGAGGTTATGGAATCTTCAAATACTTTACATCTACGCATCTTATAGGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

152

Amino Acids

17.33

Weight (kDa)

9.52

Isoelectric Point (pI)

26.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015701)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 110, 191
AgsI TTSAA 6 cut(s) 118, 133, 173, 226, 318, 424
AluBI AGCT 3 cut(s) 67, 230, 383
AluI AGCT 3 cut(s) 67, 230, 383
BauI CACGAG 1 cut(s) 355
BccI CCATC 3 cut(s) 35, 185, 195
BclI TGATCA 1 cut(s) 322
BmsI GCATC 2 cut(s) 384, 451
Bsa29I ATCGAT 1 cut(s) 337
BsaAI YACGTR 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 109
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 191
BseCI ATCGAT 1 cut(s) 337
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 2 cut(s) 110, 191
BseMII CTCAG 1 cut(s) 359
BshVI ATCGAT 1 cut(s) 337
BsiWI CGTACG 1 cut(s) 31
BslI CCNNNNNNNGG 2 cut(s) 110, 191
Bsp143I GATC 2 cut(s) 35, 322
Bsp19I CCATGG 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 360
BspDI ATCGAT 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 2 cut(s) 35, 322
BssSI CACGAG 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 355
BstBAI YACGTR 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 65, 399
BstDEI CTNAG 1 cut(s) 368
BstDSI CCRYGG 1 cut(s) 109
BstEII GGTNACC 1 cut(s) 22
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 2 cut(s) 38, 325
BstMBI GATC 2 cut(s) 35, 322
BstPI GGTNACC 1 cut(s) 22
Bsu15I ATCGAT 1 cut(s) 337
BsuTUI ATCGAT 1 cut(s) 337
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 65, 399
ClaI ATCGAT 1 cut(s) 337
Csp6I GTAC 1 cut(s) 32
CviAII CATG 2 cut(s) 52, 110
CviJI RGCY 3 cut(s) 67, 230, 383
CviKI_1 RGCY 3 cut(s) 67, 230, 383
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 1 cut(s) 368
DpnI GATC 2 cut(s) 37, 324
DpnII GATC 2 cut(s) 35, 322
Eco130I CCWWGG 1 cut(s) 109
Eco91I GGTNACC 1 cut(s) 22
EcoO65I GGTNACC 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 2 cut(s) 55, 113
FaiI YATR 6 cut(s) 42, 53, 111, 246, 414, 449
FatI CATG 2 cut(s) 51, 109
FbaI TGATCA 1 cut(s) 322
FokI GGATG 1 cut(s) 203
Hin1II CATG 2 cut(s) 55, 113
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 5 cut(s) 5, 100, 205, 249, 417
HpaI GTTAAC 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 276, 369
Hpy188III TCNNGA 2 cut(s) 118, 236
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 2 cut(s) 167, 324
HpyCH4IV ACGT 2 cut(s) 85, 181
HpyCH4V TGCA 3 cut(s) 63, 266, 377
HpyF3I CTNAG 1 cut(s) 368
HpySE526I ACGT 2 cut(s) 85, 181
Hsp92II CATG 2 cut(s) 55, 113
Ksp22I TGATCA 1 cut(s) 322
KspAI GTTAAC 1 cut(s) 145
Kzo9I GATC 2 cut(s) 35, 322
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 4 cut(s) 110, 198, 249, 393
LweI GCATC 2 cut(s) 384, 451
MaeII ACGT 2 cut(s) 85, 181
MaeIII GTNAC 2 cut(s) 22, 86
MalI GATC 2 cut(s) 37, 324
MboI GATC 2 cut(s) 35, 322
MboII GAAGA 2 cut(s) 89, 412
MluCI AATT 1 cut(s) 128
MlyI GAGTC 2 cut(s) 214, 258
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 4 cut(s) 37, 114, 363, 401
MseI TTAA 1 cut(s) 144
NcoI CCATGG 1 cut(s) 109
NdeII GATC 2 cut(s) 35, 322
NlaIII CATG 2 cut(s) 55, 113
NmuCI GTSAC 1 cut(s) 86
PfeI GAWTC 3 cut(s) 5, 100, 417
Pfl23II CGTACG 1 cut(s) 31
PleI GAGTC 2 cut(s) 213, 257
PpsI GAGTC 2 cut(s) 213, 257
Ppu21I YACGTR 1 cut(s) 86
PspEI GGTNACC 1 cut(s) 22
PspLI CGTACG 1 cut(s) 31
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 2 cut(s) 35, 322
SchI GAGTC 2 cut(s) 214, 258
SetI ASST 9 cut(s) 69, 88, 138, 184, 232, 272, 316, 385, 412
SfaNI GCATC 2 cut(s) 384, 451
Sse9I AATT 1 cut(s) 128
SspI AATATT 1 cut(s) 297
StyI CCWWGG 1 cut(s) 109
TaiI ACGT 2 cut(s) 88, 184
TaqI TCGA 1 cut(s) 337
TasI AATT 1 cut(s) 128
TfiI GAWTC 3 cut(s) 5, 100, 417
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseFI GTSAC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.