Prupe.7G099400_v2.0.a1

Secoisolariciresinol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0016366
Physical Location & Seq
Reverse (-)
13020466 .. 13021659
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G099400.1

Sequence Viewer

Length: 912 bp
ATGTATATATATATGAAATCAAGGGCCTCTATGCATTTGCATCAATTAGTGAAGTTAAAGATGAGCAGCTCTTCCTCTTTAGCTCCGAGTCCCAAAAGGTTGGATGGCAAAGTGGCAATAATCACTGGAGGAGCTAGCGGCATTGGAGAGAGCACTGTAAGATTGTTTGTCCAGCATGGTGCCAAAGTCATCATAGCCGATGTCCAAGACGAACTTTCTCTGTCCCTCTGCAAAGAACTCGACCCGGATGAAGAATCCGTTTGCTACACCCGCTGCGATGTCAAGGTTGAATCTGATGTGAAAAATGTAGTGGATTTGGCTCTGTCCAAGTATGGCAAGCTTGACATCATGTACAACAATGCCGGCATACCGGGCAACTTGGAGCCAACAATTTTAAGCGCTGGTGCCGAAAACTTCAAACAAGTGTTTGATGTGAATGTATACGGAGCTTTCTTGGGCGCCAAGCATGCTGCTAGGGCTATGATCCCTGCCAAGAAAGGTGTCATTTTGTTCACTTCAAGCGTAGCATCCGCGAGCTGCGGTGAGTCTCCACACGCTTACACCATGTCGAAGCACGCGGTGGTGGGACTTATGAAGAGCTTGTGTGTGGAGCTGGGGCAGCATGGGATCAGAGTCAACTGCATTTCTCCATGTGCCATGGCAACTCCATTGCTAAGAAATGTTATGGGGATGGAGAGAGATGCGGTGGAGGAGCTGATTTGTGCTGCGGCGGTGTTGAAAGGGGCGGTGCCTAGGGCAGAGGATGTGGCGGAAGCTGCGGTGTACTTGGCAAGTGAGGAGTCTAAGTTTGTAAATGGACTGAACCTTCTTGTGGATGGAGGTTATAGCACCACTAATCAATCTTTTAGTATGGTTTTGAGAAATTTGATGTCCTCAAACCAAGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

304

Amino Acids

32.35

Weight (kDa)

6.65

Isoelectric Point (pI)

35.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19750
malus_domestica MD12G1032700.v1.1 MD14G1033600.v1.1
prunus_persica Prupe.7G099400_v2.0.a1
pyrus_communis pycom12g03020 pycom14g02970
rosa_chinensis RchiOBHm_Chr3g0475091
rosa_laevigata RLG00000023863
rosa_multiflora Rmu_sc0003093.1_g000023
rosa_roxburghii Rroxscaffold_6G00406570
rosa_rugosa Rorug03G0146700
rosa_samantha Rh3AG196500 Rh3BG226500 Rh3DG221900
rosa_wichuraiana Rw3G017880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 179, 404, 458, 748
AccI GTMKAC 1 cut(s) 441
AccII CGCG 2 cut(s) 533, 578
AclWI GGATC 2 cut(s) 478, 635
AcsI RAATTY 1 cut(s) 883
AcyI GRCGYC 1 cut(s) 459
AdeI CACNNNGTG 1 cut(s) 580
AfaI GTAC 2 cut(s) 353, 785
AfeI AGCGCT 1 cut(s) 400
AfiI CCNNNNNNNGG 1 cut(s) 832
AgsI TTSAA 4 cut(s) 290, 418, 519, 739
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 552
AlwI GGATC 2 cut(s) 478, 635
Aor51HI AGCGCT 1 cut(s) 400
AoxI GGCC 1 cut(s) 24
ApeKI GCWGC 7 cut(s) 66, 273, 470, 537, 619, 725, 776
ApoI RAATTY 1 cut(s) 883
AspA2I CCTAGG 1 cut(s) 752
AspLEI GCGC 2 cut(s) 401, 461
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 2 cut(s) 245, 372
AsuHPI GGTGA 1 cut(s) 554
AsuNHI GCTAGC 1 cut(s) 134
AvrII CCTAGG 1 cut(s) 752
BanI GGYRCC 4 cut(s) 179, 404, 458, 748
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 7 cut(s) 78, 260, 457, 524, 631, 712, 763
BccI CCATC 3 cut(s) 98, 685, 830
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BcnI CCSGG 2 cut(s) 245, 372
BcoDI GTCTC 1 cut(s) 552
BfaI CTAG 3 cut(s) 135, 474, 753
BfoI RGCGCY 2 cut(s) 402, 462
BisI GCNGC 9 cut(s) 67, 139, 274, 471, 538, 620, 726, 729, 777
BlnI CCTAGG 1 cut(s) 752
BlsI GCNGC 9 cut(s) 68, 140, 275, 472, 539, 621, 727, 730, 778
Bme1390I CCNGG 2 cut(s) 245, 372
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 5 cut(s) 181, 384, 406, 460, 750
BmrFI CCNGG 2 cut(s) 245, 372
BmsI GCATC 3 cut(s) 49, 536, 691
BmtI GCTAGC 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 147
BpuMI CCSGG 2 cut(s) 245, 372
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 2 cut(s) 657, 752
BsaXI ACNNNNNCTCC 2 cut(s) 791, 821
Bsc4I CCNNNNNNNGG 1 cut(s) 832
Bse118I RCCGGY 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 668
BseDI CCNNGG 2 cut(s) 657, 752
BseGI GGATG 6 cut(s) 109, 253, 527, 696, 769, 841
BseLI CCNNNNNNNGG 1 cut(s) 832
BseMI GCAATG 1 cut(s) 668
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 3 cut(s) 144, 725, 812
BseXI GCAGC 7 cut(s) 78, 260, 457, 524, 631, 712, 763
BseYI CCCAGC 1 cut(s) 613
Bsh1236I CGCG 2 cut(s) 533, 578
BshFI GGCC 1 cut(s) 26
BshNI GGYRCC 4 cut(s) 179, 404, 458, 748
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 3 cut(s) 245, 363, 371
BslFI GGGAC 3 cut(s) 75, 208, 600
BslI CCNNNNNNNGG 1 cut(s) 832
BsmAI GTCTC 1 cut(s) 552
BsmFI GGGAC 3 cut(s) 75, 208, 600
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 155
Bsp1407I TGTACA 1 cut(s) 351
Bsp143I GATC 2 cut(s) 483, 627
Bsp19I CCATGG 1 cut(s) 657
BspANI GGCC 1 cut(s) 26
BspFNI CGCG 2 cut(s) 533, 578
BspLI GGNNCC 5 cut(s) 181, 384, 406, 460, 750
BspOI GCTAGC 1 cut(s) 138
BspPI GGATC 2 cut(s) 478, 635
BspQI GCTCTTC 2 cut(s) 76, 590
BspT107I GGYRCC 4 cut(s) 179, 404, 458, 748
BsrDI GCAATG 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 362
BsrGI TGTACA 1 cut(s) 351
BsrI ACTGG 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 362
BssECI CCNNGG 2 cut(s) 657, 752
BssMI GATC 2 cut(s) 483, 627
BssNAI GTATAC 1 cut(s) 442
BssNI GRCGYC 1 cut(s) 459
BssT1I CCWWGG 2 cut(s) 657, 752
Bst1107I GTATAC 1 cut(s) 442
Bst4CI ACNGT 1 cut(s) 157
Bst6I CTCTTC 2 cut(s) 76, 590
BstACI GRCGYC 1 cut(s) 459
BstAUI TGTACA 1 cut(s) 351
BstC8I GCNNGC 6 cut(s) 136, 338, 364, 468, 535, 576
BstDEI CTNAG 2 cut(s) 674, 804
BstDSI CCRYGG 1 cut(s) 657
BstF5I GGATG 6 cut(s) 109, 253, 527, 696, 769, 841
BstFNI CGCG 2 cut(s) 533, 578
BstH2I RGCGCY 2 cut(s) 402, 462
BstHHI GCGC 2 cut(s) 401, 461
BstKTI GATC 2 cut(s) 486, 630
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 2 cut(s) 483, 627
BstMWI GCNNNNNNNGC 6 cut(s) 270, 372, 467, 476, 619, 776
BstNSI RCATGY 1 cut(s) 470
BstSCI CCNGG 2 cut(s) 243, 370
BstUI CGCG 2 cut(s) 533, 578
BstV1I GCAGC 7 cut(s) 78, 260, 457, 524, 631, 712, 763
BstXI CCANNNNNNTGG 1 cut(s) 100
BstZ17I GTATAC 1 cut(s) 442
BsuRI GGCC 1 cut(s) 26
BtgI CCRYGG 1 cut(s) 657
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 6 cut(s) 109, 253, 527, 696, 769, 841
BtsIMutI CAGTG 2 cut(s) 123, 153
Cac8I GCNNGC 6 cut(s) 136, 338, 364, 468, 535, 576
CfoI GCGC 2 cut(s) 401, 461
Cfr10I RCCGGY 1 cut(s) 362
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 2 cut(s) 352, 784
CviAII CATG 7 cut(s) 176, 349, 467, 565, 623, 651, 658
CviQI GTAC 2 cut(s) 352, 784
DdeI CTNAG 2 cut(s) 674, 804
DinI GGCGCC 1 cut(s) 460
DpnI GATC 2 cut(s) 485, 629
DpnII GATC 2 cut(s) 483, 627
DraIII CACNNNGTG 1 cut(s) 580
Eam1104I CTCTTC 2 cut(s) 76, 590
EarI CTCTTC 2 cut(s) 76, 590
EciI GGCGGA 1 cut(s) 785
Eco130I CCWWGG 2 cut(s) 657, 752
Eco47III AGCGCT 1 cut(s) 400
EcoO109I RGGNCCY 1 cut(s) 24
EcoT14I CCWWGG 2 cut(s) 657, 752
EcoT22I ATGCAT 1 cut(s) 36
EgeI GGCGCC 1 cut(s) 460
EheI GGCGCC 1 cut(s) 460
ErhI CCWWGG 2 cut(s) 657, 752
FaeI CATG 7 cut(s) 179, 352, 470, 568, 626, 654, 661
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FaqI GGGAC 3 cut(s) 75, 208, 600
FatI CATG 7 cut(s) 175, 348, 466, 564, 622, 650, 657
FauI CCCGC 1 cut(s) 278
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 9 cut(s) 67, 139, 274, 471, 538, 620, 726, 729, 777
FokI GGATG 6 cut(s) 116, 260, 514, 703, 776, 848
Fsp4HI GCNGC 9 cut(s) 67, 139, 274, 471, 538, 620, 726, 729, 777
FspBI CTAG 3 cut(s) 135, 474, 753
GlaI GCGC 2 cut(s) 400, 460
GluI GCNGC 9 cut(s) 67, 139, 274, 471, 538, 620, 726, 729, 777
GsaI CCCAGC 1 cut(s) 617
GsuI CTGGAG 1 cut(s) 147
HaeII RGCGCY 2 cut(s) 402, 462
HaeIII GGCC 1 cut(s) 26
HapII CCGG 3 cut(s) 245, 363, 371
HhaI GCGC 2 cut(s) 401, 461
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 7 cut(s) 179, 352, 470, 568, 626, 654, 661
Hin6I GCGC 2 cut(s) 399, 459
HinP1I GCGC 2 cut(s) 399, 459
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 6 cut(s) 88, 254, 290, 545, 633, 800
HpaII CCGG 3 cut(s) 245, 363, 371
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 4 cut(s) 442, 513, 637, 784
Hpy188I TCNGA 3 cut(s) 87, 295, 632
Hpy8I GTNNAC 4 cut(s) 442, 513, 637, 784
HpyAV CCTTC 1 cut(s) 836
HpyCH4III ACNGT 1 cut(s) 157
HpyCH4V TGCA 4 cut(s) 34, 40, 231, 642
HpyF10VI GCNNNNNNNGC 6 cut(s) 270, 372, 467, 476, 619, 776
HpyF3I CTNAG 2 cut(s) 674, 804
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 7 cut(s) 179, 352, 470, 568, 626, 654, 661
HspAI GCGC 2 cut(s) 399, 459
KasI GGCGCC 1 cut(s) 458
KroI GCCGGC 1 cut(s) 362
KroNI GCCGGC 1 cut(s) 364
Kzo9I GATC 2 cut(s) 483, 627
LguI GCTCTTC 2 cut(s) 76, 590
LmnI GCTCC 6 cut(s) 88, 131, 382, 446, 610, 712
LpnPI CCDG 8 cut(s) 111, 185, 258, 376, 384, 387, 501, 599
Lsp1109I GCAGC 7 cut(s) 78, 260, 457, 524, 631, 712, 763
LweI GCATC 3 cut(s) 49, 536, 691
MaeI CTAG 3 cut(s) 135, 474, 753
MalI GATC 2 cut(s) 485, 629
MboI GATC 2 cut(s) 483, 627
MboII GAAGA 3 cut(s) 63, 263, 607
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 3 cut(s) 44, 390, 883
Mly113I GGCGCC 1 cut(s) 459
MlyI GAGTC 4 cut(s) 97, 554, 642, 809
MmeI TCCRAC 1 cut(s) 81
MnlI CCTC 9 cut(s) 37, 85, 122, 236, 703, 754, 790, 833, 904
Mph1103I ATGCAT 1 cut(s) 36
MroNI GCCGGC 1 cut(s) 362
MseI TTAA 2 cut(s) 56, 395
MspA1I CMGCKG 1 cut(s) 273
MspI CCGG 3 cut(s) 245, 363, 371
MspR9I CCNGG 2 cut(s) 245, 372
MvnI CGCG 2 cut(s) 533, 578
MwoI GCNNNNNNNGC 6 cut(s) 270, 372, 467, 476, 619, 776
NaeI GCCGGC 1 cut(s) 364
NarI GGCGCC 1 cut(s) 459
NciI CCSGG 2 cut(s) 245, 372
NcoI CCATGG 1 cut(s) 657
NdeII GATC 2 cut(s) 483, 627
NgoMIV GCCGGC 1 cut(s) 362
NheI GCTAGC 1 cut(s) 134
NlaIII CATG 7 cut(s) 179, 352, 470, 568, 626, 654, 661
NlaIV GGNNCC 5 cut(s) 181, 384, 406, 460, 750
NsiI ATGCAT 1 cut(s) 36
NspI RCATGY 1 cut(s) 470
PaeI GCATGC 1 cut(s) 470
PciSI GCTCTTC 2 cut(s) 76, 590
PdiI GCCGGC 1 cut(s) 364
PfeI GAWTC 2 cut(s) 254, 290
PkrI GCNGC 9 cut(s) 68, 140, 275, 472, 539, 621, 727, 730, 778
PleI GAGTC 4 cut(s) 96, 553, 641, 808
PluTI GGCGCC 1 cut(s) 462
PpsI GAGTC 4 cut(s) 96, 553, 641, 808
PspFI CCCAGC 1 cut(s) 613
PspN4I GGNNCC 5 cut(s) 181, 384, 406, 460, 750
PspPI GGNCC 1 cut(s) 24
RsaI GTAC 2 cut(s) 353, 785
RsaNI GTAC 2 cut(s) 352, 784
SapI GCTCTTC 2 cut(s) 76, 590
SaqAI TTAA 2 cut(s) 56, 395
SatI GCNGC 9 cut(s) 67, 139, 274, 471, 538, 620, 726, 729, 777
Sau3AI GATC 2 cut(s) 483, 627
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 4 cut(s) 97, 554, 642, 809
ScrFI CCNGG 2 cut(s) 245, 372
SduI GDGCHC 1 cut(s) 155
SfaNI GCATC 3 cut(s) 49, 536, 691
SfoI GGCGCC 1 cut(s) 460
SphI GCATGC 1 cut(s) 470
Sse9I AATT 3 cut(s) 44, 390, 883
SspDI GGCGCC 1 cut(s) 458
SspMI CTAG 3 cut(s) 135, 474, 753
StyD4I CCNGG 2 cut(s) 243, 370
StyI CCWWGG 2 cut(s) 657, 752
TaaI ACNGT 1 cut(s) 157
TaqI TCGA 2 cut(s) 240, 569
TasI AATT 3 cut(s) 44, 390, 883
TatI WGTACW 2 cut(s) 351, 783
TauI GCSGC 2 cut(s) 141, 731
TfiI GAWTC 2 cut(s) 254, 290
Tru1I TTAA 2 cut(s) 56, 395
Tru9I TTAA 2 cut(s) 56, 395
TscAI CASTG 2 cut(s) 130, 160
TseI GCWGC 7 cut(s) 66, 273, 470, 537, 619, 725, 776
TspDTI ATGAA 3 cut(s) 29, 264, 608
TspGWI ACGGA 2 cut(s) 247, 459
TspRI CASTG 2 cut(s) 130, 160
XapI RAATTY 1 cut(s) 883
XceI RCATGY 1 cut(s) 470
XmaJI CCTAGG 1 cut(s) 752
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 3 cut(s) 135, 474, 753
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.