Rorug03G0146700

Secoisolariciresinol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0016366
Physical Location & Seq
Reverse (-)
12022156 .. 12022937
782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0146700.1

Sequence Viewer

Length: 480 bp
ATGAAGAGAACGAGAGAAGAGCTTGTTGGTGTAGACATGGCAAACATTCTTATGCTACTATCATGTAGGTTAGAGACCAACTTCAAAAAATGCTCATCTTCCCCAAACCACGTGTTCGAGTGCAAAACCTGCAAACGTCAATTCCCGTCTTTCCAAGCTCTTGGTGGTCACAGAGCAAGCCACAAGAGGCCGAGAACGTTAATGGGTAGCGATCAAGATCCGAAAAGTGAGACCGAATCGGGGAAAGGCAAGACGCAAAAGCGCGAGTGCTCCATATGCGGGCTGGAGTTTAGTTCGGGGCAAGCGTTGGGGGGTCATATGAGAAGGCATAGAATGACGAATGCTGGGTCTAGTTCTCCAGTTCCTGCAGCTGCTGCAGTTGCTGGTGCCTCGAAGATTCCGGTGCTAATGAGGTCGAATAGTAAAAGGGTGATGTTTTTGGACATGGATCTCAACCTGACGCGCGCCTTCAGAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

159

Amino Acids

17.58

Weight (kDa)

10.05

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 38 - 64 9.2e-13 C2H2-type zinc finger
zf-C2H2_6 PF13912 89 - 111 1.5e-10 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19750
malus_domestica MD12G1032700.v1.1 MD14G1033600.v1.1
prunus_persica Prupe.7G099400_v2.0.a1
pyrus_communis pycom12g03020 pycom14g02970
rosa_chinensis RchiOBHm_Chr3g0475091
rosa_laevigata RLG00000023863
rosa_multiflora Rmu_sc0003093.1_g000023
rosa_roxburghii Rroxscaffold_6G00406570
rosa_rugosa Rorug03G0146700
rosa_samantha Rh3AG196500 Rh3BG226500 Rh3DG221900
rosa_wichuraiana Rw3G017880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 137
AccB1I GGYRCC 1 cut(s) 386
AccI GTMKAC 1 cut(s) 33
AccII CGCG 3 cut(s) 264, 463, 465
AciI CCGC 1 cut(s) 279
AclI AACGTT 1 cut(s) 197
AclWI GGATC 2 cut(s) 212, 456
AcuI CTGAAG 1 cut(s) 454
AcvI CACGTG 1 cut(s) 112
AfiI CCNNNNNNNGG 2 cut(s) 240, 279
AflIII ACRYGT 1 cut(s) 111
AgsI TTSAA 1 cut(s) 85
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 3 cut(s) 22, 158, 371
AluI AGCT 3 cut(s) 22, 158, 371
Alw21I GWGCWC 1 cut(s) 272
Alw26I GTCTC 2 cut(s) 68, 224
AlwI GGATC 2 cut(s) 212, 456
AlwNI CAGNNNCTG 3 cut(s) 365, 374, 383
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 3 cut(s) 368, 371, 374
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 3 cut(s) 264, 465, 467
AsuHPI GGTGA 1 cut(s) 442
BanI GGYRCC 1 cut(s) 386
BbrPI CACGTG 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 272
BbvI GCAGC 3 cut(s) 358, 361, 380
BcoDI GTCTC 2 cut(s) 68, 224
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 2 cut(s) 366, 375
BfuAI ACCTGC 1 cut(s) 137
BisI GCNGC 3 cut(s) 369, 372, 375
BlsI GCNGC 3 cut(s) 370, 373, 376
BmiI GGNNCC 1 cut(s) 388
BpmI CTGGAG 2 cut(s) 305, 342
BsaAI YACGTR 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 216
BsaI GGTCTC 2 cut(s) 68, 224
BsaWI WCCGGW 1 cut(s) 400
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 279
Bse1I ACTGG 1 cut(s) 359
Bse8I GATNNNNATC 1 cut(s) 216
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 2 cut(s) 240, 279
BseNI ACTGG 1 cut(s) 359
BsePI GCGCGC 1 cut(s) 463
BseXI GCAGC 3 cut(s) 358, 361, 380
BseYI CCCAGC 1 cut(s) 344
Bsh1236I CGCG 3 cut(s) 264, 463, 465
BshFI GGCC 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 401
BslI CCNNNNNNNGG 2 cut(s) 240, 279
BsmAI GTCTC 2 cut(s) 68, 224
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 1 cut(s) 190
Bso31I GGTCTC 2 cut(s) 68, 224
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 3 cut(s) 211, 217, 448
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 190
BspFNI CGCG 3 cut(s) 264, 463, 465
BspLI GGNNCC 1 cut(s) 388
BspMAI CTGCAG 2 cut(s) 370, 379
BspMI ACCTGC 1 cut(s) 137
BspPI GGATC 2 cut(s) 212, 456
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 386
BspTNI GGTCTC 2 cut(s) 68, 224
BsrI ACTGG 1 cut(s) 359
BssHII GCGCGC 1 cut(s) 463
BssMI GATC 3 cut(s) 211, 217, 448
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 2 cut(s) 129, 374
BstBAI YACGTR 1 cut(s) 112
BstC8I GCNNGC 4 cut(s) 178, 281, 303, 465
BstFNI CGCG 3 cut(s) 264, 463, 465
BstHHI GCGC 3 cut(s) 264, 465, 467
BstKTI GATC 3 cut(s) 214, 220, 451
BstMAI GTCTC 2 cut(s) 68, 224
BstMBI GATC 3 cut(s) 211, 217, 448
BstMWI GCNNNNNNNGC 4 cut(s) 129, 276, 374, 380
BstSFI CTRYAG 2 cut(s) 366, 375
BstUI CGCG 3 cut(s) 264, 463, 465
BstV1I GCAGC 3 cut(s) 358, 361, 380
BstX2I RGATCY 2 cut(s) 217, 448
BstXI CCANNNNNNTGG 1 cut(s) 161
BstYI RGATCY 2 cut(s) 217, 448
BsuRI GGCC 1 cut(s) 190
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 4 cut(s) 178, 281, 303, 465
CaiI CAGNNNCTG 3 cut(s) 365, 374, 383
CfoI GCGC 3 cut(s) 264, 465, 467
CseI GACGC 2 cut(s) 262, 469
CviAII CATG 3 cut(s) 37, 63, 445
CviJI RGCY 6 cut(s) 22, 158, 180, 190, 283, 371
CviKI_1 RGCY 6 cut(s) 22, 158, 180, 190, 283, 371
DpnI GATC 3 cut(s) 213, 219, 450
DpnII GATC 3 cut(s) 211, 217, 448
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco31I GGTCTC 2 cut(s) 68, 224
Eco57I CTGAAG 1 cut(s) 454
Eco72I CACGTG 1 cut(s) 112
FaeI CATG 3 cut(s) 40, 66, 448
FaiI YATR 9 cut(s) 38, 53, 64, 275, 277, 318, 320, 330, 446
FatI CATG 3 cut(s) 36, 62, 444
FauI CCCGC 1 cut(s) 272
FauNDI CATATG 2 cut(s) 275, 318
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 369, 372, 375
Fsp4HI GCNGC 3 cut(s) 369, 372, 375
FspBI CTAG 1 cut(s) 351
GlaI GCGC 3 cut(s) 263, 464, 466
GluI GCNGC 3 cut(s) 369, 372, 375
GsaI CCCAGC 1 cut(s) 348
GsuI CTGGAG 2 cut(s) 305, 342
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 401
HgaI GACGC 2 cut(s) 262, 469
HhaI GCGC 3 cut(s) 264, 465, 467
Hin1II CATG 3 cut(s) 40, 66, 448
Hin6I GCGC 3 cut(s) 262, 463, 465
HinP1I GCGC 3 cut(s) 262, 463, 465
HinfI GANTC 2 cut(s) 236, 397
HpaII CCGG 1 cut(s) 401
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 222, 473
Hpy188III TCNNGA 1 cut(s) 215
Hpy8I GTNNAC 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 318, 478
HpyCH4IV ACGT 3 cut(s) 111, 136, 197
HpyCH4V TGCA 4 cut(s) 123, 132, 368, 377
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 276, 374, 380
HpySE526I ACGT 3 cut(s) 111, 136, 197
Hsp92II CATG 3 cut(s) 40, 66, 448
HspAI GCGC 3 cut(s) 262, 463, 465
Kzo9I GATC 3 cut(s) 211, 217, 448
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 8 cut(s) 142, 269, 330, 369, 372, 378, 414, 470
Lsp1109I GCAGC 3 cut(s) 358, 361, 380
MaeI CTAG 1 cut(s) 351
MaeII ACGT 3 cut(s) 111, 136, 197
MaeIII GTNAC 1 cut(s) 167
MalI GATC 3 cut(s) 213, 219, 450
MboI GATC 3 cut(s) 211, 217, 448
MboII GAAGA 4 cut(s) 16, 29, 90, 406
MflI RGATCY 2 cut(s) 217, 448
MhlI GDGCHC 1 cut(s) 272
MluCI AATT 1 cut(s) 140
MnlI CCTC 3 cut(s) 180, 400, 405
MseI TTAA 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 50
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 1 cut(s) 401
Mva1269I GAATGC 1 cut(s) 346
MvnI CGCG 3 cut(s) 264, 463, 465
MwoI GCNNNNNNNGC 4 cut(s) 129, 276, 374, 380
NdeI CATATG 2 cut(s) 275, 318
NdeII GATC 3 cut(s) 211, 217, 448
NlaIII CATG 3 cut(s) 40, 66, 448
NlaIV GGNNCC 1 cut(s) 388
NmeAIII GCCGAG 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 167
PauI GCGCGC 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 12
PcsI WCGNNNNNNNCGW 1 cut(s) 302
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 2 cut(s) 236, 397
PkrI GCNGC 3 cut(s) 370, 373, 376
PmaCI CACGTG 1 cut(s) 112
PmlI CACGTG 1 cut(s) 112
Ppu21I YACGTR 1 cut(s) 112
Psp1406I AACGTT 1 cut(s) 197
PspCI CACGTG 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 388
PstI CTGCAG 2 cut(s) 370, 379
PstNI CAGNNNCTG 3 cut(s) 365, 374, 383
PsuI RGATCY 2 cut(s) 217, 448
PteI GCGCGC 1 cut(s) 463
PvuII CAGCTG 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 200
SatI GCNGC 3 cut(s) 369, 372, 375
Sau3AI GATC 3 cut(s) 211, 217, 448
SduI GDGCHC 1 cut(s) 272
SfcI CTRYAG 2 cut(s) 366, 375
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 1 cut(s) 140
SsiI CCGC 1 cut(s) 279
SspMI CTAG 1 cut(s) 351
TaiI ACGT 3 cut(s) 114, 139, 200
TaqI TCGA 3 cut(s) 117, 392, 416
TaqII GACCGA 1 cut(s) 248
TasI AATT 1 cut(s) 140
TfiI GAWTC 2 cut(s) 236, 397
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 3 cut(s) 368, 371, 374
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 2 cut(s) 161, 280
XmiI GTMKAC 1 cut(s) 33
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.