Rmu_sc0003093.1_g000023

Secoisolariciresinol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003093.1
OG0016366
Physical Location & Seq
Forward (+)
113558 .. 114487
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003093.1_g000023.1.cds

Sequence Viewer

Length: 930 bp
atgagcatgagttcttcctcactagctccacctgatcccaaaaggtacagcttaattttgacaatcccaattagccttttgattttggtcatcattaagtgtttgaaacattgcaggttagaaggcaaagtggcaatcatcactgggggtgccagcggaatcggagagagcaccgcaagactgtttgtttatcacggtgctaaagtcatcattgccgatgtccaagacgagcttgctctatccctctgcaaagaactcgacccggatcaagaatccatttcgtatgtccactgtgatgtcacaatcgattccgatgtgaaaaatgtggtagatgtggcgatctccaagtacggaaaacttgatatcatgtacaacaatgctggcatacctggtaacgtggacccaacgattttaggtgcggatcaccagaacttcaagcaagtgtttgatgtgaatgtgtacggggctttcttgggcgccaagcatgctgctagggttatgatccctgcaaaaaacggcagcattctcttcacttcgagtgtgacatcgactagttgtggcgagtcttcacatgcatatacgtcgtcgaagcacgcggtggtggggcttatgaagagtttgtgtgtggagttggggcagtatggtattagagttaactgcatctctccatgcgctatggctactccattgttaacaaatgctatgggaatggagaagaatgtggtggagggattgatttgtgcttcggctgttttgaaaggagttgtgcccagatcagaggatgtagccgaggctgcggtattcttggcaagcgaggagtcgaagtttgtgagtggactaaaccttcttgtcgatgggggttatagcactaccaatcaatcgtttagtacggttctgaggaatctcatgtcctcaaaccatgttttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

309

Amino Acids

32.77

Weight (kDa)

6.06

Isoelectric Point (pI)

27.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19750
malus_domestica MD12G1032700.v1.1 MD14G1033600.v1.1
prunus_persica Prupe.7G099400_v2.0.a1
pyrus_communis pycom12g03020 pycom14g02970
rosa_chinensis RchiOBHm_Chr3g0475091
rosa_laevigata RLG00000023863
rosa_multiflora Rmu_sc0003093.1_g000023
rosa_roxburghii Rroxscaffold_6G00406570
rosa_rugosa Rorug03G0146700
rosa_samantha Rh3AG196500 Rh3BG226500 Rh3DG221900
rosa_wichuraiana Rw3G017880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 105
AccB1I GGYRCC 2 cut(s) 149, 476
AccII CGCG 1 cut(s) 596
AciI CCGC 5 cut(s) 156, 174, 419, 596, 797
AclWI GGATC 4 cut(s) 29, 273, 429, 496
AcyI GRCGYC 1 cut(s) 477
AdeI CACNNNGTG 1 cut(s) 598
AfaI GTAC 5 cut(s) 47, 350, 371, 461, 889
AgsI TTSAA 3 cut(s) 106, 436, 757
AhlI ACTAGT 1 cut(s) 551
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 3 cut(s) 26, 51, 232
AluI AGCT 3 cut(s) 26, 51, 232
Alw21I GWGCWC 1 cut(s) 173
AlwI GGATC 4 cut(s) 29, 273, 429, 496
ApeKI GCWGC 3 cut(s) 488, 519, 794
AspLEI GCGC 2 cut(s) 479, 674
AspS9I GGNCC 1 cut(s) 400
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 416
AvaII GGWCC 1 cut(s) 400
BaeGI GKGCMC 1 cut(s) 771
BanI GGYRCC 2 cut(s) 149, 476
BbsI GAAGAC 1 cut(s) 558
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 3 cut(s) 475, 531, 781
BccI CCATC 1 cut(s) 848
BceAI ACGGC 1 cut(s) 532
BcgI CGANNNNNNTGC 4 cut(s) 238, 272, 564, 598
BciT130I CCWGG 1 cut(s) 390
BcnI CCSGG 1 cut(s) 263
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 3 cut(s) 23, 492, 552
BfoI RGCGCY 1 cut(s) 480
BfuAI ACCTGC 1 cut(s) 105
BisI GCNGC 3 cut(s) 489, 520, 795
BlsI GCNGC 3 cut(s) 490, 521, 796
Bme1390I CCNGG 2 cut(s) 263, 390
Bme18I GGWCC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 400
BmiI GGNNCC 3 cut(s) 151, 402, 478
BmrFI CCNGG 2 cut(s) 263, 390
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 669
BmuI ACTGGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 558
BpuMI CCSGG 1 cut(s) 263
Bsa29I ATCGAT 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 789
BsaXI ACNNNNNCTCC 2 cut(s) 809, 839
Bse1I ACTGG 1 cut(s) 148
Bse3DI GCAATG 2 cut(s) 109, 210
BseBI CCWGG 1 cut(s) 390
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 789
BseGI GGATG 1 cut(s) 787
BseMI GCAATG 2 cut(s) 109, 210
BseMII CTCAG 1 cut(s) 887
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 830
BseSI GKGCMC 1 cut(s) 771
BseXI GCAGC 3 cut(s) 475, 531, 781
Bsh1236I CGCG 1 cut(s) 596
BshNI GGYRCC 2 cut(s) 149, 476
BshVI ATCGAT 1 cut(s) 306
BsiHKAI GWGCWC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 263
BsmI GAATGC 1 cut(s) 522
Bsp1286I GDGCHC 2 cut(s) 173, 771
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 6 cut(s) 34, 265, 339, 421, 501, 773
BspACI CCGC 5 cut(s) 156, 174, 419, 596, 797
BspCNI CTCAG 1 cut(s) 888
BspDI ATCGAT 1 cut(s) 306
BspFNI CGCG 1 cut(s) 596
BspLI GGNNCC 3 cut(s) 151, 402, 478
BspMI ACCTGC 1 cut(s) 105
BspPI GGATC 4 cut(s) 29, 273, 429, 496
BspT107I GGYRCC 2 cut(s) 149, 476
BsrDI GCAATG 2 cut(s) 109, 210
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 789
BssMI GATC 6 cut(s) 34, 265, 339, 421, 501, 773
BssNI GRCGYC 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 4 cut(s) 183, 197, 293, 892
Bst6I CTCTTC 2 cut(s) 533, 608
BstACI GRCGYC 1 cut(s) 477
BstAUI TGTACA 1 cut(s) 369
BstC8I GCNNGC 6 cut(s) 154, 234, 382, 486, 594, 811
BstDEI CTNAG 1 cut(s) 896
BstF5I GGATG 1 cut(s) 787
BstFNI CGCG 1 cut(s) 596
BstH2I RGCGCY 1 cut(s) 480
BstHHI GCGC 2 cut(s) 479, 674
BstKTI GATC 6 cut(s) 37, 268, 342, 424, 504, 776
BstMBI GATC 6 cut(s) 34, 265, 339, 421, 501, 773
BstMWI GCNNNNNNNGC 2 cut(s) 485, 794
BstNI CCWGG 1 cut(s) 390
BstNSI RCATGY 2 cut(s) 488, 575
BstSCI CCNGG 2 cut(s) 261, 388
BstSLI GKGCMC 1 cut(s) 771
BstUI CGCG 1 cut(s) 596
BstV1I GCAGC 3 cut(s) 475, 531, 781
BstV2I GAAGAC 1 cut(s) 558
Bsu15I ATCGAT 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 306
BtsCI GGATG 1 cut(s) 787
BtsIMutI CAGTG 2 cut(s) 141, 289
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 6 cut(s) 154, 234, 382, 486, 594, 811
CfoI GCGC 2 cut(s) 479, 674
Cfr13I GGNCC 1 cut(s) 400
ClaI ATCGAT 1 cut(s) 306
CsiI ACCWGGT 1 cut(s) 388
Csp6I GTAC 5 cut(s) 46, 349, 370, 460, 888
CviAII CATG 7 cut(s) 7, 367, 485, 572, 669, 907, 920
CviQI GTAC 5 cut(s) 46, 349, 370, 460, 888
DdeI CTNAG 1 cut(s) 896
DinI GGCGCC 1 cut(s) 478
DpnI GATC 6 cut(s) 36, 267, 341, 423, 503, 775
DpnII GATC 6 cut(s) 34, 265, 339, 421, 501, 773
DraIII CACNNNGTG 1 cut(s) 598
Eam1104I CTCTTC 2 cut(s) 533, 608
EarI CTCTTC 2 cut(s) 533, 608
Eco32I GATATC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 388
EcoRV GATATC 1 cut(s) 364
EcoT22I ATGCAT 1 cut(s) 577
EgeI GGCGCC 1 cut(s) 478
EheI GGCGCC 1 cut(s) 478
FaeI CATG 7 cut(s) 10, 370, 488, 575, 672, 910, 923
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 7 cut(s) 6, 366, 484, 571, 668, 906, 919
Fnu4HI GCNGC 3 cut(s) 489, 520, 795
FokI GGATG 1 cut(s) 794
Fsp4HI GCNGC 3 cut(s) 489, 520, 795
FspBI CTAG 3 cut(s) 23, 492, 552
GlaI GCGC 2 cut(s) 478, 673
GluI GCNGC 3 cut(s) 489, 520, 795
HaeII RGCGCY 1 cut(s) 480
HapII CCGG 1 cut(s) 263
HhaI GCGC 2 cut(s) 479, 674
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 7 cut(s) 10, 370, 488, 575, 672, 910, 923
Hin6I GCGC 2 cut(s) 477, 672
HinP1I GCGC 2 cut(s) 477, 672
HincII GTYRAC 2 cut(s) 655, 693
HindII GTYRAC 2 cut(s) 655, 693
HinfI GANTC 6 cut(s) 159, 272, 308, 563, 818, 901
HpaI GTTAAC 2 cut(s) 655, 693
HpaII CCGG 1 cut(s) 263
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 6 cut(s) 289, 400, 460, 655, 693, 836
Hpy188I TCNGA 4 cut(s) 164, 313, 778, 897
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 6 cut(s) 289, 400, 460, 655, 693, 836
Hpy99I CGWCG 2 cut(s) 586, 589
HpyAV CCTTC 2 cut(s) 116, 854
HpyCH4III ACNGT 4 cut(s) 183, 197, 293, 892
HpyCH4IV ACGT 2 cut(s) 396, 581
HpyCH4V TGCA 5 cut(s) 114, 249, 509, 575, 660
HpyF10VI GCNNNNNNNGC 2 cut(s) 485, 794
HpyF3I CTNAG 1 cut(s) 896
HpySE526I ACGT 2 cut(s) 396, 581
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 7 cut(s) 10, 370, 488, 575, 672, 910, 923
HspAI GCGC 2 cut(s) 477, 672
KasI GGCGCC 1 cut(s) 476
KspAI GTTAAC 2 cut(s) 655, 693
Kzo9I GATC 6 cut(s) 34, 265, 339, 421, 501, 773
LmnI GCTCC 1 cut(s) 31
Lsp1109I GCAGC 3 cut(s) 475, 531, 781
LweI GCATC 1 cut(s) 669
MabI ACCWGGT 1 cut(s) 388
MaeI CTAG 3 cut(s) 23, 492, 552
MaeII ACGT 2 cut(s) 396, 581
MaeIII GTNAC 3 cut(s) 298, 392, 541
MalI GATC 6 cut(s) 36, 267, 341, 423, 503, 775
MboI GATC 6 cut(s) 34, 265, 339, 421, 501, 773
MboII GAAGA 5 cut(s) 6, 520, 558, 625, 727
MhlI GDGCHC 2 cut(s) 173, 771
MluCI AATT 2 cut(s) 54, 69
Mly113I GGCGCC 1 cut(s) 477
MlyI GAGTC 2 cut(s) 572, 827
MnlI CCTC 8 cut(s) 28, 254, 721, 772, 784, 808, 891, 922
Mph1103I ATGCAT 1 cut(s) 577
MseI TTAA 4 cut(s) 53, 96, 654, 692
MslI CAYNNNNRTG 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 2 cut(s) 263, 390
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 1 cut(s) 390
MvnI CGCG 1 cut(s) 596
MwoI GCNNNNNNNGC 2 cut(s) 485, 794
NarI GGCGCC 1 cut(s) 477
NciI CCSGG 1 cut(s) 263
NdeII GATC 6 cut(s) 34, 265, 339, 421, 501, 773
NlaIII CATG 7 cut(s) 10, 370, 488, 575, 672, 910, 923
NlaIV GGNNCC 3 cut(s) 151, 402, 478
NmeAIII GCCGAG 1 cut(s) 814
NmuCI GTSAC 2 cut(s) 298, 541
NsiI ATGCAT 1 cut(s) 577
NspI RCATGY 2 cut(s) 488, 575
PaeI GCATGC 1 cut(s) 488
PctI GAATGC 1 cut(s) 522
PfeI GAWTC 4 cut(s) 159, 272, 308, 901
PkrI GCNGC 3 cut(s) 490, 521, 796
PleI GAGTC 2 cut(s) 571, 826
PluTI GGCGCC 1 cut(s) 480
PpsI GAGTC 2 cut(s) 571, 826
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 3 cut(s) 151, 402, 478
PspPI GGNCC 1 cut(s) 400
RsaI GTAC 5 cut(s) 47, 350, 371, 461, 889
RsaNI GTAC 5 cut(s) 46, 349, 370, 460, 888
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 4 cut(s) 53, 96, 654, 692
SatI GCNGC 3 cut(s) 489, 520, 795
Sau3AI GATC 6 cut(s) 34, 265, 339, 421, 501, 773
Sau96I GGNCC 1 cut(s) 400
SchI GAGTC 2 cut(s) 572, 827
ScrFI CCNGG 2 cut(s) 263, 390
SduI GDGCHC 2 cut(s) 173, 771
SexAI ACCWGGT 1 cut(s) 388
SfaNI GCATC 1 cut(s) 669
SfoI GGCGCC 1 cut(s) 478
SinI GGWCC 1 cut(s) 400
SmiMI CAYNNNNRTG 1 cut(s) 294
SpeI ACTAGT 1 cut(s) 551
SphI GCATGC 1 cut(s) 488
Sse9I AATT 2 cut(s) 54, 69
SsiI CCGC 5 cut(s) 156, 174, 419, 596, 797
SspDI GGCGCC 1 cut(s) 476
SspMI CTAG 3 cut(s) 23, 492, 552
StyD4I CCNGG 2 cut(s) 261, 388
TaaI ACNGT 4 cut(s) 183, 197, 293, 892
TaiI ACGT 2 cut(s) 399, 584
TaqI TCGA 7 cut(s) 258, 306, 536, 548, 587, 821, 852
TasI AATT 2 cut(s) 54, 69
TatI WGTACW 1 cut(s) 369
TfiI GAWTC 4 cut(s) 159, 272, 308, 901
Tru1I TTAA 4 cut(s) 53, 96, 654, 692
Tru9I TTAA 4 cut(s) 53, 96, 654, 692
TscAI CASTG 2 cut(s) 148, 296
TseFI GTSAC 2 cut(s) 298, 541
TseI GCWGC 3 cut(s) 488, 519, 794
Tsp45I GTSAC 2 cut(s) 298, 541
TspDTI ATGAA 1 cut(s) 626
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 2 cut(s) 148, 296
VpaK11BI GGWCC 1 cut(s) 400
XceI RCATGY 2 cut(s) 488, 575
XspI CTAG 3 cut(s) 23, 492, 552
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.