Rw3G017880

Secoisolariciresinol dehydrogenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016366
Physical Location & Seq
Forward (+)
19655698 .. 19656627
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017880.1

Sequence Viewer

Length: 858 bp
ATGAGCATGAGTTCTTCCTCACTAGCTCCACCTGATCCCAAAAGGTTAGAAGGCAAAGTGGCAATCATCACTGGGGGTGCCAGCGGAATCGGAGAGAGCACCGCAAGACTCTTTGTTTATCACGGTGCTAAAGTGATCATTGCCGATGTCCAAGACGAGCTTGCTCTATCCCTCTGCAAAGAACTCGACCCCGATCAAGAATCCATTTCGTATGTCCACTGTGATGTCACAATCGATTCCGATGTGAAAAATGTGGTAGATGTGGCGATCTCCAAGTACGGAAAACTTGATATCATGTACAACAATGCTGGCATACCTGGTAACGTGGACCCAACGATTTTAGGTGCGGAACCCCAGAACTTCAAGCAAGTGTTTGATGTGAATGTGTACGGGGCTTTCTTGGGCGCCAAGCATGCTGCTAGGGTTATGATCCCTGCAAAAAACGGCAGCATTCTCTTCACTTCGAGTGTGACATCGGCTAGTTGTGGCGAGTCTTCACATGCATATACGTCGTCGAAGCACGCGGTGGTGGGGCTTATGAAGAGTTTGTGTGTGGAGTTGGGGCAGTATGGTATTAGAGTTAACTGCATCTCTCCATGCGCTATGGCTACTCCATTGTTAACAAATGCTATGGGAATGGAGAAGAATGTGGTGGAGGGATTGATTTGTGCTTCGGCTGTTTTGAAAGGAGTTGTGCCCAGATCAGAGGATGTAGCCGAGGCTGCGGTATTCTTGGCAAGCGAGGAGTCGAAGTTTGTGAGTGGACTAAACCTTCTTGTCGATGGGGGTTATAGCACTACCAATCAATCGTTTAGTACGGTTCTGAGGAATCTCATGTCCTCAAACCATGTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
adh_short_C2

Protein Analysis

285

Amino Acids

29.97

Weight (kDa)

5.36

Isoelectric Point (pI)

29.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 19 - 210 3e-51 short chain dehydrogenase
SDR PF23441 19 - 263 1.1e-10 SDR-like rossmann domain
KR PF08659 22 - 179 6.7e-09 KR domain
adh_short_C2 PF13561 27 - 265 5.8e-61 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016366)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19750
malus_domestica MD12G1032700.v1.1 MD14G1033600.v1.1
prunus_persica Prupe.7G099400_v2.0.a1
pyrus_communis pycom12g03020 pycom14g02970
rosa_chinensis RchiOBHm_Chr3g0475091
rosa_laevigata RLG00000023863
rosa_multiflora Rmu_sc0003093.1_g000023
rosa_roxburghii Rroxscaffold_6G00406570
rosa_rugosa Rorug03G0146700
rosa_samantha Rh3AG196500 Rh3BG226500 Rh3DG221900
rosa_wichuraiana Rw3G017880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 77, 404
AccII CGCG 1 cut(s) 524
AciI CCGC 5 cut(s) 84, 102, 347, 524, 725
AclWI GGATC 2 cut(s) 29, 424
AcyI GRCGYC 1 cut(s) 405
AdeI CACNNNGTG 1 cut(s) 526
AfaI GTAC 4 cut(s) 278, 299, 389, 817
AgsI TTSAA 2 cut(s) 364, 685
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 2 cut(s) 26, 160
AluI AGCT 2 cut(s) 26, 160
Alw21I GWGCWC 1 cut(s) 101
AlwI GGATC 2 cut(s) 29, 424
ApeKI GCWGC 3 cut(s) 416, 447, 722
AspLEI GCGC 2 cut(s) 407, 602
AspS9I GGNCC 1 cut(s) 328
AvaII GGWCC 1 cut(s) 328
BaeGI GKGCMC 1 cut(s) 699
BanI GGYRCC 2 cut(s) 77, 404
BbsI GAAGAC 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 3 cut(s) 403, 459, 709
BccI CCATC 1 cut(s) 776
BceAI ACGGC 1 cut(s) 460
BcgI CGANNNNNNTGC 4 cut(s) 166, 200, 492, 526
BciT130I CCWGG 1 cut(s) 318
BclI TGATCA 1 cut(s) 135
BfaI CTAG 3 cut(s) 23, 420, 480
BfoI RGCGCY 1 cut(s) 408
BisI GCNGC 3 cut(s) 417, 448, 723
BlsI GCNGC 3 cut(s) 418, 449, 724
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 4 cut(s) 79, 330, 351, 406
BmrFI CCNGG 1 cut(s) 318
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 1 cut(s) 597
BmuI ACTGGG 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 486
Bsa29I ATCGAT 1 cut(s) 234
BsaHI GRCGYC 1 cut(s) 405
BsaJI CCNNGG 1 cut(s) 717
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bse1I ACTGG 1 cut(s) 76
Bse3DI GCAATG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 318
BseCI ATCGAT 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 717
BseGI GGATG 1 cut(s) 715
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 815
BseNI ACTGG 1 cut(s) 76
BseRI GAGGAG 1 cut(s) 758
BseSI GKGCMC 1 cut(s) 699
BseXI GCAGC 3 cut(s) 403, 459, 709
Bsh1236I CGCG 1 cut(s) 524
BshNI GGYRCC 2 cut(s) 77, 404
BshVI ATCGAT 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 450
Bsp1286I GDGCHC 2 cut(s) 101, 699
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 6 cut(s) 34, 135, 193, 267, 429, 701
BspACI CCGC 5 cut(s) 84, 102, 347, 524, 725
BspCNI CTCAG 1 cut(s) 816
BspDI ATCGAT 1 cut(s) 234
BspFNI CGCG 1 cut(s) 524
BspLI GGNNCC 4 cut(s) 79, 330, 351, 406
BspPI GGATC 2 cut(s) 29, 424
BspT107I GGYRCC 2 cut(s) 77, 404
BsrDI GCAATG 1 cut(s) 138
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 6 cut(s) 34, 135, 193, 267, 429, 701
BssNI GRCGYC 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 125, 221, 820
Bst6I CTCTTC 2 cut(s) 461, 536
BstACI GRCGYC 1 cut(s) 405
BstAUI TGTACA 1 cut(s) 297
BstC8I GCNNGC 6 cut(s) 82, 162, 310, 414, 522, 739
BstDEI CTNAG 1 cut(s) 824
BstF5I GGATG 1 cut(s) 715
BstFNI CGCG 1 cut(s) 524
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 2 cut(s) 407, 602
BstKTI GATC 6 cut(s) 37, 138, 196, 270, 432, 704
BstMBI GATC 6 cut(s) 34, 135, 193, 267, 429, 701
BstMWI GCNNNNNNNGC 2 cut(s) 413, 722
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 2 cut(s) 416, 503
BstSCI CCNGG 1 cut(s) 316
BstSLI GKGCMC 1 cut(s) 699
BstUI CGCG 1 cut(s) 524
BstV1I GCAGC 3 cut(s) 403, 459, 709
BstV2I GAAGAC 1 cut(s) 486
Bsu15I ATCGAT 1 cut(s) 234
BsuTUI ATCGAT 1 cut(s) 234
BtsCI GGATG 1 cut(s) 715
BtsIMutI CAGTG 2 cut(s) 69, 217
Cac8I GCNNGC 6 cut(s) 82, 162, 310, 414, 522, 739
CfoI GCGC 2 cut(s) 407, 602
Cfr13I GGNCC 1 cut(s) 328
ClaI ATCGAT 1 cut(s) 234
CsiI ACCWGGT 1 cut(s) 316
Csp6I GTAC 4 cut(s) 277, 298, 388, 816
CviAII CATG 7 cut(s) 7, 295, 413, 500, 597, 835, 848
CviJI RGCY 9 cut(s) 26, 160, 395, 479, 535, 608, 677, 716, 722
CviKI_1 RGCY 9 cut(s) 26, 160, 395, 479, 535, 608, 677, 716, 722
CviQI GTAC 4 cut(s) 277, 298, 388, 816
DdeI CTNAG 1 cut(s) 824
DinI GGCGCC 1 cut(s) 406
DpnI GATC 6 cut(s) 36, 137, 195, 269, 431, 703
DpnII GATC 6 cut(s) 34, 135, 193, 267, 429, 701
DraIII CACNNNGTG 1 cut(s) 526
Eam1104I CTCTTC 2 cut(s) 461, 536
EarI CTCTTC 2 cut(s) 461, 536
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 316
EcoRV GATATC 1 cut(s) 292
EcoT22I ATGCAT 1 cut(s) 505
EgeI GGCGCC 1 cut(s) 406
EheI GGCGCC 1 cut(s) 406
FaeI CATG 7 cut(s) 10, 298, 416, 503, 600, 838, 851
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 7 cut(s) 6, 294, 412, 499, 596, 834, 847
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 417, 448, 723
FokI GGATG 1 cut(s) 722
Fsp4HI GCNGC 3 cut(s) 417, 448, 723
FspBI CTAG 3 cut(s) 23, 420, 480
GlaI GCGC 2 cut(s) 406, 601
GluI GCNGC 3 cut(s) 417, 448, 723
HaeII RGCGCY 1 cut(s) 408
HhaI GCGC 2 cut(s) 407, 602
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 7 cut(s) 10, 298, 416, 503, 600, 838, 851
Hin6I GCGC 2 cut(s) 405, 600
HinP1I GCGC 2 cut(s) 405, 600
HincII GTYRAC 2 cut(s) 583, 621
HindII GTYRAC 2 cut(s) 583, 621
HinfI GANTC 7 cut(s) 87, 108, 200, 236, 491, 746, 829
HpaI GTTAAC 2 cut(s) 583, 621
Hpy166II GTNNAC 6 cut(s) 217, 328, 388, 583, 621, 764
Hpy188I TCNGA 4 cut(s) 92, 241, 706, 825
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 6 cut(s) 217, 328, 388, 583, 621, 764
Hpy99I CGWCG 2 cut(s) 514, 517
HpyAV CCTTC 2 cut(s) 44, 782
HpyCH4III ACNGT 3 cut(s) 125, 221, 820
HpyCH4IV ACGT 2 cut(s) 324, 509
HpyCH4V TGCA 4 cut(s) 177, 437, 503, 588
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 722
HpyF3I CTNAG 1 cut(s) 824
HpySE526I ACGT 2 cut(s) 324, 509
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 7 cut(s) 10, 298, 416, 503, 600, 838, 851
HspAI GCGC 2 cut(s) 405, 600
KasI GGCGCC 1 cut(s) 404
Ksp22I TGATCA 1 cut(s) 135
KspAI GTTAAC 2 cut(s) 583, 621
Kzo9I GATC 6 cut(s) 34, 135, 193, 267, 429, 701
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 9 cut(s) 45, 57, 94, 294, 303, 330, 368, 447, 712
Lsp1109I GCAGC 3 cut(s) 403, 459, 709
LweI GCATC 1 cut(s) 597
MabI ACCWGGT 1 cut(s) 316
MaeI CTAG 3 cut(s) 23, 420, 480
MaeII ACGT 2 cut(s) 324, 509
MaeIII GTNAC 3 cut(s) 226, 320, 469
MalI GATC 6 cut(s) 36, 137, 195, 269, 431, 703
MboI GATC 6 cut(s) 34, 135, 193, 267, 429, 701
MboII GAAGA 5 cut(s) 6, 448, 486, 553, 655
MhlI GDGCHC 2 cut(s) 101, 699
Mly113I GGCGCC 1 cut(s) 405
MlyI GAGTC 3 cut(s) 102, 500, 755
MnlI CCTC 8 cut(s) 28, 182, 649, 700, 712, 736, 819, 850
Mph1103I ATGCAT 1 cut(s) 505
MseI TTAA 2 cut(s) 582, 620
MslI CAYNNNNRTG 1 cut(s) 222
MspA1I CMGCKG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 318
Mva1269I GAATGC 1 cut(s) 450
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 1 cut(s) 524
MwoI GCNNNNNNNGC 2 cut(s) 413, 722
NarI GGCGCC 1 cut(s) 405
NdeII GATC 6 cut(s) 34, 135, 193, 267, 429, 701
NlaIII CATG 7 cut(s) 10, 298, 416, 503, 600, 838, 851
NlaIV GGNNCC 4 cut(s) 79, 330, 351, 406
NmeAIII GCCGAG 1 cut(s) 742
NmuCI GTSAC 2 cut(s) 226, 469
NsiI ATGCAT 1 cut(s) 505
NspI RCATGY 2 cut(s) 416, 503
PaeI GCATGC 1 cut(s) 416
PctI GAATGC 1 cut(s) 450
PfeI GAWTC 4 cut(s) 87, 200, 236, 829
PkrI GCNGC 3 cut(s) 418, 449, 724
PleI GAGTC 3 cut(s) 102, 499, 754
PluTI GGCGCC 1 cut(s) 408
PpsI GAGTC 3 cut(s) 102, 499, 754
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 4 cut(s) 79, 330, 351, 406
PspPI GGNCC 1 cut(s) 328
RsaI GTAC 4 cut(s) 278, 299, 389, 817
RsaNI GTAC 4 cut(s) 277, 298, 388, 816
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 2 cut(s) 582, 620
SatI GCNGC 3 cut(s) 417, 448, 723
Sau3AI GATC 6 cut(s) 34, 135, 193, 267, 429, 701
Sau96I GGNCC 1 cut(s) 328
SchI GAGTC 3 cut(s) 102, 500, 755
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 2 cut(s) 101, 699
SetI ASST 9 cut(s) 28, 34, 47, 162, 319, 327, 346, 512, 774
SexAI ACCWGGT 1 cut(s) 316
SfaNI GCATC 1 cut(s) 597
SfoI GGCGCC 1 cut(s) 406
SinI GGWCC 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 222
SphI GCATGC 1 cut(s) 416
SsiI CCGC 5 cut(s) 84, 102, 347, 524, 725
SspDI GGCGCC 1 cut(s) 404
SspMI CTAG 3 cut(s) 23, 420, 480
StyD4I CCNGG 1 cut(s) 316
TaaI ACNGT 3 cut(s) 125, 221, 820
TaiI ACGT 2 cut(s) 327, 512
TaqI TCGA 6 cut(s) 186, 234, 464, 515, 749, 780
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 4 cut(s) 87, 200, 236, 829
Tru1I TTAA 2 cut(s) 582, 620
Tru9I TTAA 2 cut(s) 582, 620
TscAI CASTG 2 cut(s) 76, 224
TseFI GTSAC 2 cut(s) 226, 469
TseI GCWGC 3 cut(s) 416, 447, 722
Tsp45I GTSAC 2 cut(s) 226, 469
TspDTI ATGAA 1 cut(s) 554
TspGWI ACGGA 1 cut(s) 294
TspRI CASTG 2 cut(s) 76, 224
VpaK11BI GGWCC 1 cut(s) 328
XceI RCATGY 2 cut(s) 416, 503
XspI CTAG 3 cut(s) 23, 420, 480
Zsp2I ATGCAT 1 cut(s) 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.