Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0016366

Physical Location & Seq

Genomic Coordinates Reverse (-)

29083284 .. 29084217

Gene Structure 934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00406570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGCATGAGTTCTTCCTCACTAGCTCCTCCTGATCCCAAAAGGTTAGAAGGCAAAGTGGCAATCATCACCGGGGGTGCCAGCGGAATAGGAGAGAGCACCGCAAGACTGTTCGTTTATCACGGTGCTAAAGTCATCATTGCCGATGTCCAAGACGAGCTTGCTCTATCCCTCTGCAAAGAACTCGACCCGGATCAAGAATCCATTTCGTATGTCCATTGTGATGTCACAATCGATTCCGATGTGAAAAATGTGGTAGATGTGGCGATCTCCAAGTACGGAAAACTTGATATCATGTACAACAATGCTGGCATACCCGGTAACGTGGACCCAACGATATTAGGTGCGGATAACCAGAACTTCAAGCAAGTGTTTGATGTGAATGTGTACGGGGCTTTCTTGGGCGCCAAGCATGCTGCTAGGGTTATGATCCCTGCAAAAAACGGCAGCATTCTCTTCACTTCGAGTGTGACATCGGCTAGTTGTGGCGAGTCTTCACATGCCTATACGATGTCGAAGCACGCGGTGGTGGGGCTTATGAAGAGTTTGTGTGTGGAGTTGGGGCAGTATGGTATTAGAGTTAACTGCATCTCTCCATGCGCTATGGCTACTCCATTGTTAACAAATGCTATGGGAATGGAGAAGAATGTGGTGGAGGAATTGATTTGTGCTTCGGCTGTTTTGAAAGGAGTTGTGCCCAGATCAGAGGATGTAGCAGAGGCTGCGGTGTTCTTGGCAAGTGAGGAGTCGAAGTTTGTGAGTGGACTAAACCTTCTTGTCGATGGGGGTTATAGCACTACCAATCAATCTTTTAGTACGGTTCTGAGGAATCTCATGTCCTCAAACCATGTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

adh_short_C2

Protein Analysis

285

Amino Acids

30.09

Weight (kDa)

5.23

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	19 - 210	1.6e-50	short chain dehydrogenase
SDR	PF23441	19 - 263	1.5e-10	SDR-like rossmann domain
KR	PF08659	22 - 175	3.8e-09	KR domain
adh_short_C2	PF13561	27 - 265	7.3e-62	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016366)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19750
malus_domestica	MD12G1032700.v1.1 MD14G1033600.v1.1
prunus_persica	Prupe.7G099400_v2.0.a1
pyrus_communis	pycom12g03020 pycom14g02970
rosa_chinensis	RchiOBHm_Chr3g0475091
rosa_laevigata	RLG00000023863
rosa_multiflora	Rmu_sc0003093.1_g000023
rosa_roxburghii	Rroxscaffold_6G00406570
rosa_rugosa	Rorug03G0146700
rosa_samantha	Rh3AG196500 Rh3BG226500 Rh3DG221900
rosa_wichuraiana	Rw3G017880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	77, 404
AccII	CGCG	1 cut(s)	524
AciI	CCGC	5 cut(s)	84, 102, 347, 524, 725
AclWI	GGATC	3 cut(s)	29, 201, 424
AcyI	GRCGYC	1 cut(s)	405
AdeI	CACNNNGTG	1 cut(s)	526
AfaI	GTAC	4 cut(s)	278, 299, 389, 817
AgsI	TTSAA	2 cut(s)	364, 685
AluBI	AGCT	2 cut(s)	26, 160
AluI	AGCT	2 cut(s)	26, 160
Alw21I	GWGCWC	1 cut(s)	101
AlwI	GGATC	3 cut(s)	29, 201, 424
AlwNI	CAGNNNCTG	1 cut(s)	722
ApeKI	GCWGC	3 cut(s)	416, 447, 722
AspLEI	GCGC	2 cut(s)	407, 602
AspS9I	GGNCC	1 cut(s)	328
AsuC2I	CCSGG	3 cut(s)	73, 191, 318
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	328
BaeGI	GKGCMC	1 cut(s)	699
BanI	GGYRCC	2 cut(s)	77, 404
BbsI	GAAGAC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	3 cut(s)	403, 459, 709
BccI	CCATC	1 cut(s)	776
BceAI	ACGGC	1 cut(s)	460
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BcnI	CCSGG	3 cut(s)	73, 191, 318
BfaI	CTAG	3 cut(s)	23, 420, 480
BfoI	RGCGCY	1 cut(s)	408
BisI	GCNGC	3 cut(s)	417, 448, 723
BlsI	GCNGC	3 cut(s)	418, 449, 724
Bme1390I	CCNGG	3 cut(s)	73, 191, 318
Bme18I	GGWCC	1 cut(s)	328
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	3 cut(s)	79, 330, 406
BmrFI	CCNGG	3 cut(s)	73, 191, 318
BmsI	GCATC	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	486
BpuMI	CCSGG	3 cut(s)	73, 191, 318
Bsa29I	ATCGAT	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	737, 767
Bse3DI	GCAATG	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	715
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	815
BseRI	GAGGAG	2 cut(s)	18, 758
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	3 cut(s)	403, 459, 709
Bsh1236I	CGCG	1 cut(s)	524
BshNI	GGYRCC	2 cut(s)	77, 404
BshVI	ATCGAT	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	3 cut(s)	72, 191, 318
BsmI	GAATGC	1 cut(s)	450
Bsp1286I	GDGCHC	2 cut(s)	101, 699
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	5 cut(s)	34, 193, 267, 429, 701
BspACI	CCGC	5 cut(s)	84, 102, 347, 524, 725
BspCNI	CTCAG	1 cut(s)	816
BspDI	ATCGAT	1 cut(s)	234
BspFNI	CGCG	1 cut(s)	524
BspLI	GGNNCC	3 cut(s)	79, 330, 406
BspPI	GGATC	3 cut(s)	29, 201, 424
BspT107I	GGYRCC	2 cut(s)	77, 404
BsrDI	GCAATG	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	5 cut(s)	34, 193, 267, 429, 701
BssNI	GRCGYC	1 cut(s)	405
Bst4CI	ACNGT	3 cut(s)	111, 125, 820
Bst6I	CTCTTC	2 cut(s)	461, 536
BstACI	GRCGYC	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	5 cut(s)	82, 162, 310, 414, 522
BstDEI	CTNAG	1 cut(s)	824
BstF5I	GGATG	1 cut(s)	715
BstFNI	CGCG	1 cut(s)	524
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	2 cut(s)	407, 602
BstKTI	GATC	5 cut(s)	37, 196, 270, 432, 704
BstMBI	GATC	5 cut(s)	34, 193, 267, 429, 701
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 722
BstNSI	RCATGY	2 cut(s)	416, 503
BstSCI	CCNGG	3 cut(s)	71, 189, 316
BstSLI	GKGCMC	1 cut(s)	699
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	3 cut(s)	403, 459, 709
BstV2I	GAAGAC	1 cut(s)	486
Bsu15I	ATCGAT	1 cut(s)	234
BsuTUI	ATCGAT	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	715
Cac8I	GCNNGC	5 cut(s)	82, 162, 310, 414, 522
CaiI	CAGNNNCTG	1 cut(s)	722
CfoI	GCGC	2 cut(s)	407, 602
Cfr13I	GGNCC	1 cut(s)	328
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	4 cut(s)	277, 298, 388, 816
CviAII	CATG	7 cut(s)	7, 295, 413, 500, 597, 835, 848
CviJI	RGCY	8 cut(s)	26, 160, 395, 479, 535, 608, 677, 722
CviKI_1	RGCY	8 cut(s)	26, 160, 395, 479, 535, 608, 677, 722
CviQI	GTAC	4 cut(s)	277, 298, 388, 816
DdeI	CTNAG	1 cut(s)	824
DinI	GGCGCC	1 cut(s)	406
DpnI	GATC	5 cut(s)	36, 195, 269, 431, 703
DpnII	GATC	5 cut(s)	34, 193, 267, 429, 701
DraIII	CACNNNGTG	1 cut(s)	526
Eam1104I	CTCTTC	2 cut(s)	461, 536
EarI	CTCTTC	2 cut(s)	461, 536
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	328
EcoRV	GATATC	1 cut(s)	292
EgeI	GGCGCC	1 cut(s)	406
EheI	GGCGCC	1 cut(s)	406
FaeI	CATG	7 cut(s)	10, 298, 416, 503, 600, 838, 851
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	7 cut(s)	6, 294, 412, 499, 596, 834, 847
Fnu4HI	GCNGC	3 cut(s)	417, 448, 723
FokI	GGATG	1 cut(s)	722
Fsp4HI	GCNGC	3 cut(s)	417, 448, 723
FspBI	CTAG	3 cut(s)	23, 420, 480
GlaI	GCGC	2 cut(s)	406, 601
GluI	GCNGC	3 cut(s)	417, 448, 723
HaeII	RGCGCY	1 cut(s)	408
HapII	CCGG	3 cut(s)	72, 191, 318
HhaI	GCGC	2 cut(s)	407, 602
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	7 cut(s)	10, 298, 416, 503, 600, 838, 851
Hin6I	GCGC	2 cut(s)	405, 600
HinP1I	GCGC	2 cut(s)	405, 600
HincII	GTYRAC	2 cut(s)	583, 621
HindII	GTYRAC	2 cut(s)	583, 621
HinfI	GANTC	5 cut(s)	200, 236, 491, 746, 829
HpaI	GTTAAC	2 cut(s)	583, 621
HpaII	CCGG	3 cut(s)	72, 191, 318
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	5 cut(s)	328, 388, 583, 621, 764
Hpy188I	TCNGA	3 cut(s)	241, 706, 825
Hpy188III	TCNNGA	2 cut(s)	32, 197
Hpy8I	GTNNAC	5 cut(s)	328, 388, 583, 621, 764
HpyAV	CCTTC	2 cut(s)	44, 782
HpyCH4III	ACNGT	3 cut(s)	111, 125, 820
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	3 cut(s)	177, 437, 588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 722
HpyF3I	CTNAG	1 cut(s)	824
HpySE526I	ACGT	1 cut(s)	324
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	7 cut(s)	10, 298, 416, 503, 600, 838, 851
HspAI	GCGC	2 cut(s)	405, 600
KasI	GGCGCC	1 cut(s)	404
KspAI	GTTAAC	2 cut(s)	583, 621
Kzo9I	GATC	5 cut(s)	34, 193, 267, 429, 701
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	9 cut(s)	45, 85, 94, 204, 294, 331, 368, 447, 712
Lsp1109I	GCAGC	3 cut(s)	403, 459, 709
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	3 cut(s)	23, 420, 480
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	3 cut(s)	226, 320, 469
MalI	GATC	5 cut(s)	36, 195, 269, 431, 703
MboI	GATC	5 cut(s)	34, 193, 267, 429, 701
MboII	GAAGA	5 cut(s)	6, 448, 486, 553, 655
MhlI	GDGCHC	2 cut(s)	101, 699
MluCI	AATT	1 cut(s)	659
Mly113I	GGCGCC	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	500, 755
MnlI	CCTC	9 cut(s)	28, 39, 182, 649, 700, 712, 736, 819, 850
MseI	TTAA	2 cut(s)	582, 620
MslI	CAYNNNNRTG	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	84
MspI	CCGG	3 cut(s)	72, 191, 318
MspR9I	CCNGG	3 cut(s)	73, 191, 318
Mva1269I	GAATGC	1 cut(s)	450
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	2 cut(s)	413, 722
NarI	GGCGCC	1 cut(s)	405
NciI	CCSGG	3 cut(s)	73, 191, 318
NdeII	GATC	5 cut(s)	34, 193, 267, 429, 701
NlaIII	CATG	7 cut(s)	10, 298, 416, 503, 600, 838, 851
NlaIV	GGNNCC	3 cut(s)	79, 330, 406
NmuCI	GTSAC	2 cut(s)	226, 469
NspI	RCATGY	2 cut(s)	416, 503
PaeI	GCATGC	1 cut(s)	416
PctI	GAATGC	1 cut(s)	450
PfeI	GAWTC	3 cut(s)	200, 236, 829
PkrI	GCNGC	3 cut(s)	418, 449, 724
PleI	GAGTC	2 cut(s)	499, 754
PluTI	GGCGCC	1 cut(s)	408
PpsI	GAGTC	2 cut(s)	499, 754
PspN4I	GGNNCC	3 cut(s)	79, 330, 406
PspPI	GGNCC	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	722
RsaI	GTAC	4 cut(s)	278, 299, 389, 817
RsaNI	GTAC	4 cut(s)	277, 298, 388, 816
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	582, 620
SatI	GCNGC	3 cut(s)	417, 448, 723
Sau3AI	GATC	5 cut(s)	34, 193, 267, 429, 701
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	2 cut(s)	500, 755
ScrFI	CCNGG	3 cut(s)	73, 191, 318
SduI	GDGCHC	2 cut(s)	101, 699
SetI	ASST	6 cut(s)	28, 47, 162, 327, 346, 774
SfaNI	GCATC	1 cut(s)	597
SfoI	GGCGCC	1 cut(s)	406
SinI	GGWCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	222
SphI	GCATGC	1 cut(s)	416
Sse9I	AATT	1 cut(s)	659
SsiI	CCGC	5 cut(s)	84, 102, 347, 524, 725
SspDI	GGCGCC	1 cut(s)	404
SspMI	CTAG	3 cut(s)	23, 420, 480
StyD4I	CCNGG	3 cut(s)	71, 189, 316
TaaI	ACNGT	3 cut(s)	111, 125, 820
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	6 cut(s)	186, 234, 464, 515, 749, 780
TasI	AATT	1 cut(s)	659
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	3 cut(s)	200, 236, 829
Tru1I	TTAA	2 cut(s)	582, 620
Tru9I	TTAA	2 cut(s)	582, 620
TseFI	GTSAC	2 cut(s)	226, 469
TseI	GCWGC	3 cut(s)	416, 447, 722
Tsp45I	GTSAC	2 cut(s)	226, 469
TspDTI	ATGAA	1 cut(s)	554
TspGWI	ACGGA	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	328
XceI	RCATGY	2 cut(s)	416, 503
XspI	CTAG	3 cut(s)	23, 420, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.