histone-lysine N-methyltransferase, H3 lysine-9 specific
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G04940 AT5G04940 |
| fragaria_vesca | FvH4_6g24040 |
| malus_domestica | MD02G1267300.v1.1 MD07G1051900.v1.1 |
| prunus_persica | Prupe.2G055000_v2.0.a1 Prupe.2G069200_v2.0.a1 Prupe.7G185900_v2.0.a1 |
| pyrus_communis | pycom02g22920 pycom07g04020 |
| rosa_chinensis | RchiOBHm_Chr1g0330251 |
| rosa_laevigata | RLG00000029815 |
| rosa_multiflora | Rmu_sc0002485.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00320020 |
| rosa_rugosa | Rorug01G0087900 |
| rosa_samantha | Rh1AG106200 Rh1BG084600 Rh1CG102000 Rh1DG110000 |
| rosa_wichuraiana | Rw1G008390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1794 |
| AarI | CACCTGC | 1 cut(s) | 910 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 872 |
| Acc36I | ACCTGC | 1 cut(s) | 910 |
| AccB1I | GGYRCC | 1 cut(s) | 1129 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 770 |
| AccBSI | CCGCTC | 1 cut(s) | 269 |
| AccI | GTMKAC | 1 cut(s) | 902 |
| AciI | CCGC | 5 cut(s) | 267, 294, 568, 1343, 1955 |
| AclWI | GGATC | 7 cut(s) | 584, 806, 1441, 1454, 2016, 2029, 2059 |
| AcoI | YGGCCR | 1 cut(s) | 148 |
| AcsI | RAATTY | 1 cut(s) | 553 |
| AcuI | CTGAAG | 3 cut(s) | 21, 822, 1212 |
| AfaI | GTAC | 4 cut(s) | 192, 546, 1115, 1615 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 41, 146, 246, 303, 770, 1436, 1594 |
| AflII | CTTAAG | 1 cut(s) | 823 |
| AflIII | ACRYGT | 1 cut(s) | 1490 |
| AgeI | ACCGGT | 1 cut(s) | 1888 |
| AgsI | TTSAA | 8 cut(s) | 509, 628, 941, 973, 1026, 1111, 1217, 1338 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 255, 784 |
| AjnI | CCWGG | 7 cut(s) | 373, 596, 694, 1132, 1141, 1381, 1747 |
| AluBI | AGCT | 6 cut(s) | 41, 632, 937, 969, 1844, 2006 |
| AluI | AGCT | 6 cut(s) | 41, 632, 937, 969, 1844, 2006 |
| Alw26I | GTCTC | 3 cut(s) | 117, 263, 1760 |
| AlwI | GGATC | 7 cut(s) | 584, 806, 1441, 1454, 2016, 2029, 2059 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1235 |
| AoxI | GGCC | 7 cut(s) | 117, 148, 305, 819, 1051, 1582, 1711 |
| ApeKI | GCWGC | 1 cut(s) | 1138 |
| ApoI | RAATTY | 1 cut(s) | 553 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 455, 487 |
| AseI | ATTAAT | 1 cut(s) | 1854 |
| AsiGI | ACCGGT | 1 cut(s) | 1888 |
| AspLEI | GCGC | 1 cut(s) | 1548 |
| AspS9I | GGNCC | 4 cut(s) | 118, 305, 1484, 1582 |
| AsuC2I | CCSGG | 1 cut(s) | 2066 |
| AsuHPI | GGTGA | 7 cut(s) | 204, 461, 809, 934, 1397, 1649, 1860 |
| AsuII | TTCGAA | 1 cut(s) | 661 |
| AvaII | GGWCC | 1 cut(s) | 1484 |
| BamHI | GGATCC | 2 cut(s) | 1446, 2021 |
| BanI | GGYRCC | 1 cut(s) | 1129 |
| BanII | GRGCYC | 1 cut(s) | 292 |
| BauI | CACGAG | 1 cut(s) | 1067 |
| BbsI | GAAGAC | 3 cut(s) | 404, 522, 1913 |
| BbvI | GCAGC | 1 cut(s) | 1150 |
| BccI | CCATC | 6 cut(s) | 307, 347, 440, 1043, 1178, 1949 |
| BceAI | ACGGC | 1 cut(s) | 1698 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 595, 629, 1151, 1185 |
| BciT130I | CCWGG | 7 cut(s) | 375, 598, 696, 1134, 1143, 1383, 1749 |
| BciVI | GTATCC | 1 cut(s) | 1534 |
| BclI | TGATCA | 1 cut(s) | 928 |
| BcnI | CCSGG | 1 cut(s) | 2066 |
| BcoDI | GTCTC | 3 cut(s) | 117, 263, 1760 |
| BfaI | CTAG | 4 cut(s) | 381, 512, 1451, 1757 |
| BfrI | CTTAAG | 1 cut(s) | 823 |
| BfuAI | ACCTGC | 1 cut(s) | 910 |
| BfuI | GTATCC | 1 cut(s) | 1534 |
| BisI | GCNGC | 2 cut(s) | 1139, 1343 |
| BlsI | GCNGC | 2 cut(s) | 1140, 1344 |
| Bme1390I | CCNGG | 8 cut(s) | 375, 598, 696, 1134, 1143, 1383, 1749, 2066 |
| Bme18I | GGWCC | 1 cut(s) | 1484 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 255, 784 |
| BmgT120I | GGNCC | 4 cut(s) | 118, 305, 1484, 1582 |
| BmiI | GGNNCC | 5 cut(s) | 120, 1131, 1448, 1583, 2023 |
| BmrFI | CCNGG | 8 cut(s) | 375, 598, 696, 1134, 1143, 1383, 1749, 2066 |
| BmsI | GCATC | 6 cut(s) | 81, 97, 355, 550, 583, 790 |
| BpiI | GAAGAC | 3 cut(s) | 404, 522, 1913 |
| BpmI | CTGGAG | 1 cut(s) | 717 |
| Bpu14I | TTCGAA | 1 cut(s) | 661 |
| BpuEI | CTTGAG | 1 cut(s) | 980 |
| BpuMI | CCSGG | 1 cut(s) | 2066 |
| BsaAI | YACGTR | 1 cut(s) | 1299 |
| BsaBI | GATNNNNATC | 1 cut(s) | 369 |
| BsaI | GGTCTC | 1 cut(s) | 263 |
| BsaJI | CCNNGG | 5 cut(s) | 159, 597, 1133, 1381, 2065 |
| BsaWI | WCCGGW | 3 cut(s) | 1587, 1888, 2028 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 41, 146, 246, 303, 770, 1436, 1594 |
| Bse118I | RCCGGY | 1 cut(s) | 1888 |
| Bse1I | ACTGG | 3 cut(s) | 95, 1441, 1537 |
| Bse3DI | GCAATG | 3 cut(s) | 563, 988, 1447 |
| Bse8I | GATNNNNATC | 1 cut(s) | 369 |
| BseBI | CCWGG | 7 cut(s) | 375, 598, 696, 1134, 1143, 1383, 1749 |
| BseDI | CCNNGG | 5 cut(s) | 159, 597, 1133, 1381, 2065 |
| BseGI | GGATG | 5 cut(s) | 73, 358, 370, 1189, 1797 |
| BseJI | GATNNNNATC | 1 cut(s) | 369 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 41, 146, 246, 303, 770, 1436, 1594 |
| BseMI | GCAATG | 3 cut(s) | 563, 988, 1447 |
| BseMII | CTCAG | 1 cut(s) | 128 |
| BseNI | ACTGG | 3 cut(s) | 95, 1441, 1537 |
| BseRI | GAGGAG | 2 cut(s) | 979, 1778 |
| BseXI | GCAGC | 1 cut(s) | 1150 |
| BseYI | CCCAGC | 1 cut(s) | 1578 |
| BsgI | GTGCAG | 1 cut(s) | 762 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1592 |
| BshFI | GGCC | 7 cut(s) | 119, 150, 307, 821, 1053, 1584, 1713 |
| BshNI | GGYRCC | 1 cut(s) | 1129 |
| BshTI | ACCGGT | 1 cut(s) | 1888 |
| BsiEI | CGRYCG | 1 cut(s) | 1592 |
| BsiSI | CCGG | 5 cut(s) | 1459, 1588, 1889, 2029, 2065 |
| BslFI | GGGAC | 1 cut(s) | 1246 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 41, 146, 246, 303, 770, 1436, 1594 |
| BsmAI | GTCTC | 3 cut(s) | 117, 263, 1760 |
| BsmBI | CGTCTC | 1 cut(s) | 117 |
| BsmFI | GGGAC | 1 cut(s) | 1246 |
| BsmI | GAATGC | 1 cut(s) | 1404 |
| BsnI | GGCC | 7 cut(s) | 119, 150, 307, 821, 1053, 1584, 1713 |
| Bso31I | GGTCTC | 1 cut(s) | 263 |
| Bsp119I | TTCGAA | 1 cut(s) | 661 |
| Bsp1286I | GDGCHC | 1 cut(s) | 292 |
| Bsp143I | GATC | 6 cut(s) | 576, 811, 928, 1446, 2021, 2051 |
| BspACI | CCGC | 5 cut(s) | 267, 294, 568, 1343, 1955 |
| BspANI | GGCC | 7 cut(s) | 119, 150, 307, 821, 1053, 1584, 1713 |
| BspCNI | CTCAG | 1 cut(s) | 127 |
| BspHI | TCATGA | 1 cut(s) | 549 |
| BspLI | GGNNCC | 5 cut(s) | 120, 1131, 1448, 1583, 2023 |
| BspMI | ACCTGC | 1 cut(s) | 910 |
| BspPI | GGATC | 7 cut(s) | 584, 806, 1441, 1454, 2016, 2029, 2059 |
| BspT104I | TTCGAA | 1 cut(s) | 661 |
| BspT107I | GGYRCC | 1 cut(s) | 1129 |
| BspTI | CTTAAG | 1 cut(s) | 823 |
| BspTNI | GGTCTC | 1 cut(s) | 263 |
| BsrBI | CCGCTC | 1 cut(s) | 269 |
| BsrDI | GCAATG | 3 cut(s) | 563, 988, 1447 |
| BsrFI | RCCGGY | 1 cut(s) | 1888 |
| BsrI | ACTGG | 3 cut(s) | 95, 1441, 1537 |
| BssAI | RCCGGY | 1 cut(s) | 1888 |
| BssECI | CCNNGG | 5 cut(s) | 159, 597, 1133, 1381, 2065 |
| BssMI | GATC | 6 cut(s) | 576, 811, 928, 1446, 2021, 2051 |
| BssNAI | GTATAC | 1 cut(s) | 903 |
| BssSI | CACGAG | 1 cut(s) | 1067 |
| BssT1I | CCWWGG | 1 cut(s) | 159 |
| Bst1107I | GTATAC | 1 cut(s) | 903 |
| Bst2BI | CACGAG | 1 cut(s) | 1067 |
| Bst2UI | CCWGG | 7 cut(s) | 375, 598, 696, 1134, 1143, 1383, 1749 |
| Bst4CI | ACNGT | 5 cut(s) | 403, 521, 869, 1862, 1910 |
| Bst6I | CTCTTC | 2 cut(s) | 671, 1755 |
| BstAFI | CTTAAG | 1 cut(s) | 823 |
| BstBAI | YACGTR | 1 cut(s) | 1299 |
| BstBI | TTCGAA | 1 cut(s) | 661 |
| BstC8I | GCNNGC | 6 cut(s) | 133, 137, 267, 618, 756, 1375 |
| BstDEI | CTNAG | 1 cut(s) | 114 |
| BstF5I | GGATG | 5 cut(s) | 73, 358, 370, 1189, 1797 |
| BstHHI | GCGC | 1 cut(s) | 1548 |
| BstKTI | GATC | 6 cut(s) | 579, 814, 931, 1449, 2024, 2054 |
| BstMAI | GTCTC | 3 cut(s) | 117, 263, 1760 |
| BstMBI | GATC | 6 cut(s) | 576, 811, 928, 1446, 2021, 2051 |
| BstMCI | CGRYCG | 1 cut(s) | 1592 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 116, 1138, 1937 |
| BstNI | CCWGG | 7 cut(s) | 375, 598, 696, 1134, 1143, 1383, 1749 |
| BstNSI | RCATGY | 5 cut(s) | 135, 139, 758, 1377, 1494 |
| BstSCI | CCNGG | 8 cut(s) | 373, 596, 694, 1132, 1141, 1381, 1747, 2064 |
| BstV1I | GCAGC | 1 cut(s) | 1150 |
| BstV2I | GAAGAC | 3 cut(s) | 404, 522, 1913 |
| BstX2I | RGATCY | 4 cut(s) | 576, 811, 1446, 2021 |
| BstYI | RGATCY | 4 cut(s) | 576, 811, 1446, 2021 |
| BstZ17I | GTATAC | 1 cut(s) | 903 |
| BsuI | GTATCC | 1 cut(s) | 1534 |
| BsuRI | GGCC | 7 cut(s) | 119, 150, 307, 821, 1053, 1584, 1713 |
| BtsCI | GGATG | 5 cut(s) | 73, 358, 370, 1189, 1797 |
| BtsIMutI | CAGTG | 2 cut(s) | 102, 874 |
| BveI | ACCTGC | 1 cut(s) | 910 |
| Cac8I | GCNNGC | 6 cut(s) | 133, 137, 267, 618, 756, 1375 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1235 |
| CciI | TCATGA | 1 cut(s) | 549 |
| CfoI | GCGC | 1 cut(s) | 1548 |
| Cfr10I | RCCGGY | 1 cut(s) | 1888 |
| Cfr13I | GGNCC | 4 cut(s) | 118, 305, 1484, 1582 |
| CseI | GACGC | 1 cut(s) | 99 |
| Csp6I | GTAC | 4 cut(s) | 191, 545, 1114, 1614 |
| CspAI | ACCGGT | 1 cut(s) | 1888 |
| CviQI | GTAC | 4 cut(s) | 191, 545, 1114, 1614 |
| DdeI | CTNAG | 1 cut(s) | 114 |
| DpnI | GATC | 6 cut(s) | 578, 813, 930, 1448, 2023, 2053 |
| DpnII | GATC | 6 cut(s) | 576, 811, 928, 1446, 2021, 2051 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 872 |
| DriI | GACNNNNNGTC | 2 cut(s) | 255, 784 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 872 |
| EaeI | YGGCCR | 1 cut(s) | 148 |
| Eam1104I | CTCTTC | 2 cut(s) | 671, 1755 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 255, 784 |
| EarI | CTCTTC | 2 cut(s) | 671, 1755 |
| EciI | GGCGGA | 1 cut(s) | 1944 |
| Eco130I | CCWWGG | 1 cut(s) | 159 |
| Eco24I | GRGCYC | 1 cut(s) | 292 |
| Eco31I | GGTCTC | 1 cut(s) | 263 |
| Eco47I | GGWCC | 1 cut(s) | 1484 |
| Eco57I | CTGAAG | 3 cut(s) | 21, 822, 1212 |
| EcoO109I | RGGNCCY | 2 cut(s) | 118, 1582 |
| EcoRII | CCWGG | 7 cut(s) | 373, 596, 694, 1132, 1141, 1381, 1747 |
| EcoT14I | CCWWGG | 1 cut(s) | 159 |
| EcoT22I | ATGCAT | 3 cut(s) | 137, 565, 1375 |
| EcoT38I | GRGCYC | 1 cut(s) | 292 |
| ErhI | CCWWGG | 1 cut(s) | 159 |
| Esp3I | CGTCTC | 1 cut(s) | 117 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2027, 2059 |
| FaqI | GGGAC | 1 cut(s) | 1246 |
| FauI | CCCGC | 2 cut(s) | 274, 301 |
| FauNDI | CATATG | 1 cut(s) | 1975 |
| FbaI | TGATCA | 1 cut(s) | 928 |
| FblI | GTMKAC | 1 cut(s) | 902 |
| Fnu4HI | GCNGC | 2 cut(s) | 1139, 1343 |
| FokI | GGATG | 5 cut(s) | 80, 357, 365, 1196, 1784 |
| FriOI | GRGCYC | 1 cut(s) | 292 |
| Fsp4HI | GCNGC | 2 cut(s) | 1139, 1343 |
| FspBI | CTAG | 4 cut(s) | 381, 512, 1451, 1757 |
| GlaI | GCGC | 1 cut(s) | 1547 |
| GluI | GCNGC | 2 cut(s) | 1139, 1343 |
| GsaI | CCCAGC | 1 cut(s) | 1582 |
| GsuI | CTGGAG | 1 cut(s) | 717 |
| HaeIII | GGCC | 7 cut(s) | 119, 150, 307, 821, 1053, 1584, 1713 |
| HapII | CCGG | 5 cut(s) | 1459, 1588, 1889, 2029, 2065 |
| HgaI | GACGC | 1 cut(s) | 99 |
| HhaI | GCGC | 1 cut(s) | 1548 |
| Hin6I | GCGC | 1 cut(s) | 1546 |
| HinP1I | GCGC | 1 cut(s) | 1546 |
| HincII | GTYRAC | 2 cut(s) | 538, 1971 |
| HindII | GTYRAC | 2 cut(s) | 538, 1971 |
| HindIII | AAGCTT | 1 cut(s) | 935 |
| HpaI | GTTAAC | 1 cut(s) | 538 |
| HpaII | CCGG | 5 cut(s) | 1459, 1588, 1889, 2029, 2065 |
| HphI | GGTGA | 7 cut(s) | 204, 461, 809, 934, 1397, 1649, 1860 |
| Hpy166II | GTNNAC | 5 cut(s) | 481, 538, 903, 1066, 1971 |
| Hpy188I | TCNGA | 5 cut(s) | 728, 933, 992, 1410, 1946 |
| Hpy8I | GTNNAC | 5 cut(s) | 481, 538, 903, 1066, 1971 |
| Hpy99I | CGWCG | 1 cut(s) | 256 |
| HpyAV | CCTTC | 9 cut(s) | 45, 154, 246, 567, 787, 1174, 1273, 1356, 1673 |
| HpyCH4III | ACNGT | 5 cut(s) | 403, 521, 869, 1862, 1910 |
| HpyCH4IV | ACGT | 2 cut(s) | 1298, 1839 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 116, 1138, 1937 |
| HpyF3I | CTNAG | 1 cut(s) | 114 |
| HpySE526I | ACGT | 2 cut(s) | 1298, 1839 |
| HspAI | GCGC | 1 cut(s) | 1546 |
| Ksp22I | TGATCA | 1 cut(s) | 928 |
| KspAI | GTTAAC | 1 cut(s) | 538 |
| Kzo9I | GATC | 6 cut(s) | 576, 811, 928, 1446, 2021, 2051 |
| LmnI | GCTCC | 3 cut(s) | 274, 763, 966 |
| Lsp1109I | GCAGC | 1 cut(s) | 1150 |
| LweI | GCATC | 6 cut(s) | 81, 97, 355, 550, 583, 790 |
| MaeI | CTAG | 4 cut(s) | 381, 512, 1451, 1757 |
| MaeII | ACGT | 2 cut(s) | 1298, 1839 |
| MaeIII | GTNAC | 4 cut(s) | 521, 635, 922, 1470 |
| MalI | GATC | 6 cut(s) | 578, 813, 930, 1448, 2023, 2053 |
| MbiI | CCGCTC | 1 cut(s) | 269 |
| MboI | GATC | 6 cut(s) | 576, 811, 928, 1446, 2021, 2051 |
| MfeI | CAATTG | 2 cut(s) | 1360, 1466 |
| MflI | RGATCY | 4 cut(s) | 576, 811, 1446, 2021 |
| MhlI | GDGCHC | 1 cut(s) | 292 |
| MlyI | GAGTC | 3 cut(s) | 493, 1079, 1718 |
| MmeI | TCCRAC | 1 cut(s) | 727 |
| Mph1103I | ATGCAT | 3 cut(s) | 137, 565, 1375 |
| MseI | TTAA | 7 cut(s) | 458, 537, 824, 1560, 1661, 1731, 1854 |
| MslI | CAYNNNNRTG | 8 cut(s) | 363, 644, 981, 1337, 1479, 1495, 1784, 2059 |
| MspA1I | CMGCKG | 1 cut(s) | 41 |
| MspCI | CTTAAG | 1 cut(s) | 823 |
| MspI | CCGG | 5 cut(s) | 1459, 1588, 1889, 2029, 2065 |
| MspR9I | CCNGG | 8 cut(s) | 375, 598, 696, 1134, 1143, 1383, 1749, 2066 |
| MunI | CAATTG | 2 cut(s) | 1360, 1466 |
| Mva1269I | GAATGC | 1 cut(s) | 1404 |
| MvaI | CCWGG | 7 cut(s) | 375, 598, 696, 1134, 1143, 1383, 1749 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 116, 1138, 1937 |
| NciI | CCSGG | 1 cut(s) | 2066 |
| NdeI | CATATG | 1 cut(s) | 1975 |
| NdeII | GATC | 6 cut(s) | 576, 811, 928, 1446, 2021, 2051 |
| NlaIV | GGNNCC | 5 cut(s) | 120, 1131, 1448, 1583, 2023 |
| NmuCI | GTSAC | 1 cut(s) | 922 |
| NsiI | ATGCAT | 3 cut(s) | 137, 565, 1375 |
| NspI | RCATGY | 5 cut(s) | 135, 139, 758, 1377, 1494 |
| NspV | TTCGAA | 1 cut(s) | 661 |
| PaeI | GCATGC | 4 cut(s) | 135, 139, 758, 1377 |
| PagI | TCATGA | 1 cut(s) | 549 |
| PaqCI | CACCTGC | 1 cut(s) | 910 |
| PciI | ACATGT | 1 cut(s) | 1490 |
| PctI | GAATGC | 1 cut(s) | 1404 |
| PfeI | GAWTC | 7 cut(s) | 232, 452, 602, 658, 973, 997, 1598 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 770 |
| PinAI | ACCGGT | 1 cut(s) | 1888 |
| PkrI | GCNGC | 2 cut(s) | 1140, 1344 |
| PleI | GAGTC | 3 cut(s) | 493, 1078, 1718 |
| PpsI | GAGTC | 3 cut(s) | 493, 1078, 1718 |
| Ppu21I | YACGTR | 1 cut(s) | 1299 |
| PscI | ACATGT | 1 cut(s) | 1490 |
| PshBI | ATTAAT | 1 cut(s) | 1854 |
| PsiI | TTATAA | 1 cut(s) | 1794 |
| Psp6I | CCWGG | 7 cut(s) | 373, 596, 694, 1132, 1141, 1381, 1747 |
| PspFI | CCCAGC | 1 cut(s) | 1578 |
| PspGI | CCWGG | 7 cut(s) | 373, 596, 694, 1132, 1141, 1381, 1747 |
| PspN4I | GGNNCC | 5 cut(s) | 120, 1131, 1448, 1583, 2023 |
| PspPI | GGNCC | 4 cut(s) | 118, 305, 1484, 1582 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1737, 1769 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1235 |
| PsuI | RGATCY | 4 cut(s) | 576, 811, 1446, 2021 |
| PvuII | CAGCTG | 1 cut(s) | 41 |
| RsaI | GTAC | 4 cut(s) | 192, 546, 1115, 1615 |
| RsaNI | GTAC | 4 cut(s) | 191, 545, 1114, 1614 |
| RseI | CAYNNNNRTG | 8 cut(s) | 363, 644, 981, 1337, 1479, 1495, 1784, 2059 |
| SaqAI | TTAA | 7 cut(s) | 458, 537, 824, 1560, 1661, 1731, 1854 |
| SatI | GCNGC | 2 cut(s) | 1139, 1343 |
| Sau3AI | GATC | 6 cut(s) | 576, 811, 928, 1446, 2021, 2051 |
| Sau96I | GGNCC | 4 cut(s) | 118, 305, 1484, 1582 |
| SchI | GAGTC | 3 cut(s) | 493, 1079, 1718 |
| ScrFI | CCNGG | 8 cut(s) | 375, 598, 696, 1134, 1143, 1383, 1749, 2066 |
| SduI | GDGCHC | 1 cut(s) | 292 |
| SfaNI | GCATC | 6 cut(s) | 81, 97, 355, 550, 583, 790 |
| SfuI | TTCGAA | 1 cut(s) | 661 |
| SinI | GGWCC | 1 cut(s) | 1484 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 363, 644, 981, 1337, 1479, 1495, 1784, 2059 |
| SmlI | CTYRAG | 2 cut(s) | 823, 959 |
| SmoI | CTYRAG | 2 cut(s) | 823, 959 |
| SphI | GCATGC | 4 cut(s) | 135, 139, 758, 1377 |
| SsiI | CCGC | 5 cut(s) | 267, 294, 568, 1343, 1955 |
| SspI | AATATT | 1 cut(s) | 1319 |
| SspMI | CTAG | 4 cut(s) | 381, 512, 1451, 1757 |
| StyD4I | CCNGG | 8 cut(s) | 373, 596, 694, 1132, 1141, 1381, 1747, 2064 |
| StyI | CCWWGG | 1 cut(s) | 159 |
| TaaI | ACNGT | 5 cut(s) | 403, 521, 869, 1862, 1910 |
| TaiI | ACGT | 2 cut(s) | 1301, 1842 |
| TaqI | TCGA | 5 cut(s) | 205, 421, 588, 605, 661 |
| TaqII | GACCGA | 1 cut(s) | 267 |
| TatI | WGTACW | 2 cut(s) | 544, 1113 |
| TauI | GCSGC | 1 cut(s) | 1345 |
| TfiI | GAWTC | 7 cut(s) | 232, 452, 602, 658, 973, 997, 1598 |
| Tru1I | TTAA | 7 cut(s) | 458, 537, 824, 1560, 1661, 1731, 1854 |
| Tru9I | TTAA | 7 cut(s) | 458, 537, 824, 1560, 1661, 1731, 1854 |
| TscAI | CASTG | 2 cut(s) | 102, 874 |
| TseFI | GTSAC | 1 cut(s) | 922 |
| TseI | GCWGC | 1 cut(s) | 1138 |
| Tsp45I | GTSAC | 1 cut(s) | 922 |
| TspRI | CASTG | 2 cut(s) | 102, 874 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 770 |
| Vha464I | CTTAAG | 1 cut(s) | 823 |
| VpaK11BI | GGWCC | 1 cut(s) | 1484 |
| VspI | ATTAAT | 1 cut(s) | 1854 |
| XapI | RAATTY | 1 cut(s) | 553 |
| XceI | RCATGY | 5 cut(s) | 135, 139, 758, 1377, 1494 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1878 |
| XmiI | GTMKAC | 1 cut(s) | 902 |
| XspI | CTAG | 4 cut(s) | 381, 512, 1451, 1757 |
| Zsp2I | ATGCAT | 3 cut(s) | 137, 565, 1375 |