Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011103

Physical Location & Seq

Genomic Coordinates Forward (+)

18457802 .. 18461046

Gene Structure 3245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG106200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2133 bp

ATGGAATCTCTGAATGGTATTGATAAGTCAAGGGTTTTGGATGTTAAACCTCTGCGTACTTTGATGCCGGTGTTCCCAACCGGCGCTCAGGCCCCTAACTTTGGCTGCATGCCTCCCTTTGGGCATACCCCTAATGGGTTCTCTCCATTTTTCCCATTTAGTGCACCACCACAGGCCACTCAACAGTCACCTGATCTCAATCATGTGAGTCCTCCCGGAATGCAAACACCAGCTGGTCACATGCCGGCTCCACTTCGGTCGTATAGAGCCCCGAACCCATCTGGAGCACTGCCCCATGACTTTCCGGAGGATTCCAACGGAGACGGGGAGTCGTCAATGGGTGGGACGGCCAATGAAGATGGGTATTTTGATGGTCATAAGGACGTGGCTCCTCATCGTGGTTCTAGTTCATCTCGAAAGAAGACCAACAGAGCTAGTTCATCTCGAAAGAAGGTTAAGAAAAGTGGAGATGCTGATGCATTGATCTTTGTTGGAAACAAAGGATCGAGCGTGAACTTTGTTTCTTTGATCAGTCCAGTTCAACTAGAAGATGGTAACAGGGAGTTGGTTAATTATGTACTCATGAATTTTGATGCACTCCGGAGAAGGATCTGCCAGATTGAAGATACCAAGGAAAAGAACACCGACACCATTAAGCGTGCAGATTTAAAAGCTGGTAATATTGCAATGACCAAAAAGGTTCGAACAAACATGAGGAGGAGAATTGGAGTTGTCCCTGGAGTTGAGATTGGGGACATTTTCTTTTTCAGAATGGAAATGTGTGTGGTGGGATTACATGCTCCATCAATGGCTGGTATTGATTACATGACTCTCAAGGGTGATTTGGAAAAAGATCCCATAGCCTTGAGCATTGTTTCTTCAGGAGGCTACGAGGATGAAACAGATAGCAGCGATGTCTTGATATATAGTGGTCAGGGTGGGAATACCAACAACAAAGATAAGCAGGTGGCTGTCTCTGATCAGAAGCTTGAAAGGGGTAATCTTGCTCTTGAGAGAAGCTTGCAACGTGGCAATGAAGTAAGAGTGATTCGAGGGTTGAAAGATGATACTACTCTTAATTCCAAGGTCTATGTCTATGATGGCCTCTACAAAATCCAAGAGTCATGGACGGAGAGGGGAAAATCTGGTGGCAATATGTTCAAGTACAAGTTAGTGAGGGTGCCTGGACAGCCTGATGCCTTTTCAGTTCTGCAAACAATCCGAAAGTGGAAGGACGGTTTATCATCGAGGGCTGGACTTGTTCTTCCAGACCTCACTTCAGGGGCTGAACGTATACCTGTTTCCCTTGTAAATGAAGTTGATAACGAAAAGGGGCCTGCTTATTTCACGTATTTCCCTTCGCTCAAGTATTCTAAATCTTTCACTTTAACACAGCCTTCTCTCGGTTGCAAATGCCGTAGTGCATGCCTCCCAGGTGATATGAATTGCTCTTGCATTCAGAAAAATGAAGGTGAATTTCCTTACACTGGTAATGGGATTCTAGTCAGCCGTAAACAGTTGGTGCATGAATGTGGTGCTACATGTTCATGCCCTCCTAACTGCAAAAACCGGGTATCCCAAAGTGGTGTAAAAGTGCGCTTGGAAGTGTTTAGGACAAAGGATAGGGGCTGGGGCCTACGGTCATGGGATTCTATTCGTGCTGGTACTTTTATTTGTGAGTATGCTGGTGAAGTTATAGATGAAGTGAAATTCAAAAATAAAGGGGATGAAGGTGAAACTGATGACTATATTTTTGATACAAGGCGCGATTATGACTCCTTTAAGTGGAATTATGAACCTGGCTTACTAGATGAGGATAGTCCTAATGATTCTGTTGAGGATTATAGCATCCCATATCCCCTTATCATAAGTGCCAAGAATGCTGGGAATGTAGCTCGATTCATCAATCACGGTTGTTCACCAAATGTTTTTTGGCAACCAGTTCTATATGAACAGAACAATCAGTCTTTTCTCCATATTGCTTTTTTTGCCATCAGACACATTCCCCCTTTGACAGAACTGACATATGATTATGGGATTTCAATGTCTGATGAAGCGGCCAATAACAATGGCCTCCATAGGAAAAAGAAATGTTTATGTGGATCCTCAAAATGCCGGGGTTATTTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008361 GO:0009987 GO:0010468 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0032259 GO:0032501 GO:0032502 GO:0032535 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051276 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0098687 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00260 ko00310 ko01100 ko04146 ko04211 map00260 map00310 map01100 map04146 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

710

Amino Acids

78.51

Weight (kDa)

8.29

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	242 - 397	4.4e-57	SAD/SRA domain
Pre-SET	PF05033	427 - 524	6.2e-24	Pre-SET motif
SET	PF00856	543 - 679	2.5e-21	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04940 AT5G04940
fragaria_vesca	FvH4_6g24040
malus_domestica	MD02G1267300.v1.1 MD07G1051900.v1.1
prunus_persica	Prupe.2G055000_v2.0.a1 Prupe.2G069200_v2.0.a1 Prupe.7G185900_v2.0.a1
pyrus_communis	pycom02g22920 pycom07g04020
rosa_chinensis	RchiOBHm_Chr1g0330251
rosa_laevigata	RLG00000029815
rosa_multiflora	Rmu_sc0002485.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320020
rosa_rugosa	Rorug01G0087900
rosa_samantha	Rh1AG106200 Rh1BG084600 Rh1CG102000 Rh1DG110000
rosa_wichuraiana	Rw1G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	955
Acc36I	ACCTGC	1 cut(s)	955
AccB1I	GGYRCC	1 cut(s)	1180
AccI	GTMKAC	1 cut(s)	1294
AccII	CGCG	1 cut(s)	1767
AccIII	TCCGGA	2 cut(s)	304, 600
AciI	CCGC	1 cut(s)	2057
AclWI	GGATC	5 cut(s)	511, 617, 848, 2097, 2110
AcoI	YGGCCR	2 cut(s)	348, 2058
AcsI	RAATTY	3 cut(s)	586, 1475, 1709
AcuI	CTGAAG	2 cut(s)	864, 1263
AfaI	GTAC	4 cut(s)	58, 579, 1166, 1666
AfiI	CCNNNNNNNGG	7 cut(s)	101, 119, 135, 398, 1403, 1487, 1785
AflIII	ACRYGT	1 cut(s)	1541
AgsI	TTSAA	7 cut(s)	542, 623, 992, 1060, 1162, 1714, 2043
AhdI	GACNNNNNGTC	1 cut(s)	328
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	4 cut(s)	736, 1183, 1432, 1798
AluBI	AGCT	6 cut(s)	233, 434, 674, 988, 1020, 1895
AluI	AGCT	6 cut(s)	233, 434, 674, 988, 1020, 1895
Alw21I	GWGCWC	2 cut(s)	166, 289
Alw26I	GTCTC	2 cut(s)	315, 979
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	5 cut(s)	511, 617, 848, 2097, 2110
AlwNI	CAGNNNCTG	1 cut(s)	1286
Aor13HI	TCCGGA	2 cut(s)	304, 600
AoxI	GGCC	8 cut(s)	90, 174, 348, 1102, 1334, 1633, 2058, 2071
ApaLI	GTGCAC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	105, 909
ApoI	RAATTY	3 cut(s)	586, 1475, 1709
ArsI	GACNNNNNNTTYG	2 cut(s)	1736, 1768
AspLEI	GCGC	3 cut(s)	86, 1599, 1767
AspS9I	GGNCC	3 cut(s)	91, 1334, 1633
AsuC2I	CCSGG	3 cut(s)	216, 1571, 2117
AsuHPI	GGTGA	7 cut(s)	180, 851, 1448, 1484, 1700, 1745, 1911
AsuII	TTCGAA	1 cut(s)	703
BaeGI	GKGCMC	1 cut(s)	166
BamHI	GGATCC	1 cut(s)	2102
BanI	GGYRCC	1 cut(s)	1180
BanII	GRGCYC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	428
Bbv12I	GWGCWC	2 cut(s)	166, 289
BbvI	GCAGC	2 cut(s)	92, 921
BccI	CCATC	7 cut(s)	286, 353, 365, 545, 811, 1094, 2000
BceAI	ACGGC	3 cut(s)	363, 1401, 1494
BciT130I	CCWGG	4 cut(s)	738, 1185, 1434, 1800
BciVI	GTATCC	1 cut(s)	1585
BclI	TGATCA	2 cut(s)	528, 979
BcnI	CCSGG	3 cut(s)	216, 1571, 2117
BcoDI	GTCTC	2 cut(s)	315, 979
BfaI	CTAG	5 cut(s)	405, 435, 545, 1502, 1808
BfoI	RGCGCY	1 cut(s)	87
BfuAI	ACCTGC	1 cut(s)	955
BfuI	GTATCC	1 cut(s)	1585
BisI	GCNGC	3 cut(s)	106, 910, 2058
BlsI	GCNGC	3 cut(s)	107, 911, 2059
Bme1390I	CCNGG	7 cut(s)	216, 738, 1185, 1434, 1571, 1800, 2117
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmgBI	CACGTC	1 cut(s)	385
BmgT120I	GGNCC	3 cut(s)	91, 1334, 1633
BmiI	GGNNCC	7 cut(s)	93, 249, 390, 1182, 1335, 1634, 2104
BmrFI	CCNGG	7 cut(s)	216, 738, 1185, 1434, 1571, 1800, 2117
BmsI	GCATC	6 cut(s)	54, 460, 466, 583, 1186, 1857
BpiI	GAAGAC	1 cut(s)	428
BpmI	CTGGAG	2 cut(s)	303, 759
Bpu10I	CCTNAGC	1 cut(s)	87
Bpu14I	TTCGAA	1 cut(s)	703
BpuEI	CTTGAG	4 cut(s)	818, 886, 1031, 1349
BpuMI	CCSGG	3 cut(s)	216, 1571, 2117
BsaAI	YACGTR	1 cut(s)	1350
BsaBI	GATNNNNATC	1 cut(s)	198
BsaJI	CCNNGG	5 cut(s)	630, 736, 1083, 1432, 2116
BsaWI	WCCGGW	2 cut(s)	304, 600
Bsc4I	CCNNNNNNNGG	7 cut(s)	101, 119, 135, 398, 1403, 1487, 1785
Bse118I	RCCGGY	3 cut(s)	67, 80, 244
Bse1I	ACTGG	3 cut(s)	536, 1492, 1940
Bse3DI	GCAATG	2 cut(s)	693, 1039
Bse8I	GATNNNNATC	1 cut(s)	198
BseAI	TCCGGA	2 cut(s)	304, 600
BseBI	CCWGG	4 cut(s)	738, 1185, 1434, 1800
BseDI	CCNNGG	5 cut(s)	630, 736, 1083, 1432, 2116
BseGI	GGATG	4 cut(s)	46, 901, 1732, 1848
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	7 cut(s)	101, 119, 135, 398, 1403, 1487, 1785
BseMI	GCAATG	2 cut(s)	693, 1039
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	3 cut(s)	536, 1492, 1940
BseRI	GAGGAG	3 cut(s)	381, 730, 733
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	92, 921
BseYI	CCCAGC	2 cut(s)	1629, 1883
BsgI	GTGCAG	1 cut(s)	681
Bsh1236I	CGCG	1 cut(s)	1767
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	8 cut(s)	92, 176, 350, 1104, 1336, 1635, 2060, 2073
BshNI	GGYRCC	1 cut(s)	1180
BsiEI	CGRYCG	1 cut(s)	260
BsiHKAI	GWGCWC	2 cut(s)	166, 289
BsiSI	CCGG	8 cut(s)	68, 81, 216, 245, 305, 601, 1570, 2116
BslFI	GGGAC	3 cut(s)	358, 719, 767
BslI	CCNNNNNNNGG	7 cut(s)	101, 119, 135, 398, 1403, 1487, 1785
BsmAI	GTCTC	2 cut(s)	315, 979
BsmBI	CGTCTC	1 cut(s)	315
BsmFI	GGGAC	3 cut(s)	358, 719, 767
BsmI	GAATGC	3 cut(s)	225, 1455, 1885
BsnI	GGCC	8 cut(s)	92, 176, 350, 1104, 1336, 1635, 2060, 2073
Bsp119I	TTCGAA	1 cut(s)	703
Bsp1286I	GDGCHC	3 cut(s)	166, 271, 289
Bsp13I	TCCGGA	2 cut(s)	304, 600
Bsp143I	GATC	8 cut(s)	193, 483, 503, 528, 609, 853, 979, 2102
BspACI	CCGC	1 cut(s)	2057
BspANI	GGCC	8 cut(s)	92, 176, 350, 1104, 1336, 1635, 2060, 2073
BspCNI	CTCAG	1 cut(s)	100
BspEI	TCCGGA	2 cut(s)	304, 600
BspFNI	CGCG	1 cut(s)	1767
BspHI	TCATGA	1 cut(s)	582
BspLI	GGNNCC	7 cut(s)	93, 249, 390, 1182, 1335, 1634, 2104
BspMI	ACCTGC	1 cut(s)	955
BspPI	GGATC	5 cut(s)	511, 617, 848, 2097, 2110
BspT104I	TTCGAA	1 cut(s)	703
BspT107I	GGYRCC	1 cut(s)	1180
BsrDI	GCAATG	2 cut(s)	693, 1039
BsrFI	RCCGGY	3 cut(s)	67, 80, 244
BsrI	ACTGG	3 cut(s)	536, 1492, 1940
BssAI	RCCGGY	3 cut(s)	67, 80, 244
BssECI	CCNNGG	5 cut(s)	630, 736, 1083, 1432, 2116
BssMI	GATC	8 cut(s)	193, 483, 503, 528, 609, 853, 979, 2102
BssNAI	GTATAC	1 cut(s)	1295
BssT1I	CCWWGG	2 cut(s)	630, 1083
Bst1107I	GTATAC	1 cut(s)	1295
Bst2UI	CCWGG	4 cut(s)	738, 1185, 1434, 1800
Bst4CI	ACNGT	5 cut(s)	186, 1238, 1518, 1641, 1913
BstBAI	YACGTR	1 cut(s)	1350
BstBI	TTCGAA	1 cut(s)	703
BstC8I	GCNNGC	6 cut(s)	110, 246, 660, 1022, 1338, 1426
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	4 cut(s)	46, 901, 1732, 1848
BstFNI	CGCG	1 cut(s)	1767
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	3 cut(s)	86, 1599, 1767
BstKTI	GATC	8 cut(s)	196, 486, 506, 531, 612, 856, 982, 2105
BstMAI	GTCTC	2 cut(s)	315, 979
BstMBI	GATC	8 cut(s)	193, 483, 503, 528, 609, 853, 979, 2102
BstMCI	CGRYCG	1 cut(s)	260
BstMWI	GCNNNNNNNGC	3 cut(s)	1189, 1880, 1988
BstNI	CCWGG	4 cut(s)	738, 1185, 1434, 1800
BstNSI	RCATGY	5 cut(s)	112, 244, 800, 1428, 1545
BstSCI	CCNGG	7 cut(s)	214, 736, 1183, 1432, 1569, 1798, 2115
BstSLI	GKGCMC	1 cut(s)	166
BstUI	CGCG	1 cut(s)	1767
BstV1I	GCAGC	2 cut(s)	92, 921
BstV2I	GAAGAC	1 cut(s)	428
BstX2I	RGATCY	3 cut(s)	609, 853, 2102
BstYI	RGATCY	3 cut(s)	609, 853, 2102
BstZ17I	GTATAC	1 cut(s)	1295
BsuI	GTATCC	1 cut(s)	1585
BsuRI	GGCC	8 cut(s)	92, 176, 350, 1104, 1336, 1635, 2060, 2073
BtgZI	GCGATG	1 cut(s)	927
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	4 cut(s)	46, 901, 1732, 1848
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	287, 1485
BveI	ACCTGC	1 cut(s)	955
Cac8I	GCNNGC	6 cut(s)	110, 246, 660, 1022, 1338, 1426
CaiI	CAGNNNCTG	1 cut(s)	1286
CciI	TCATGA	1 cut(s)	582
CfoI	GCGC	3 cut(s)	86, 1599, 1767
Cfr10I	RCCGGY	3 cut(s)	67, 80, 244
Cfr13I	GGNCC	3 cut(s)	91, 1334, 1633
Csp6I	GTAC	4 cut(s)	57, 578, 1165, 1665
CviQI	GTAC	4 cut(s)	57, 578, 1165, 1665
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	8 cut(s)	195, 485, 505, 530, 611, 855, 981, 2104
DpnII	GATC	8 cut(s)	193, 483, 503, 528, 609, 853, 979, 2102
DraI	TTTAAA	1 cut(s)	669
DriI	GACNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	2 cut(s)	348, 2058
Eam1105I	GACNNNNNGTC	1 cut(s)	328
Eco130I	CCWWGG	2 cut(s)	630, 1083
Eco24I	GRGCYC	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	864, 1263
EcoO109I	RGGNCCY	3 cut(s)	91, 1334, 1633
EcoRII	CCWGG	4 cut(s)	736, 1183, 1432, 1798
EcoT14I	CCWWGG	2 cut(s)	630, 1083
EcoT22I	ATGCAT	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	2 cut(s)	630, 1083
Esp3I	CGTCTC	1 cut(s)	315
FaqI	GGGAC	3 cut(s)	358, 719, 767
FauNDI	CATATG	1 cut(s)	2026
FbaI	TGATCA	2 cut(s)	528, 979
FblI	GTMKAC	1 cut(s)	1294
Fnu4HI	GCNGC	3 cut(s)	106, 910, 2058
FokI	GGATG	4 cut(s)	53, 908, 1739, 1835
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	3 cut(s)	106, 910, 2058
FspBI	CTAG	5 cut(s)	405, 435, 545, 1502, 1808
GlaI	GCGC	3 cut(s)	85, 1598, 1766
GluI	GCNGC	3 cut(s)	106, 910, 2058
GsaI	CCCAGC	2 cut(s)	1633, 1887
GsuI	CTGGAG	2 cut(s)	303, 759
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	8 cut(s)	92, 176, 350, 1104, 1336, 1635, 2060, 2073
HapII	CCGG	8 cut(s)	68, 81, 216, 245, 305, 601, 1570, 2116
HhaI	GCGC	3 cut(s)	86, 1599, 1767
Hin6I	GCGC	3 cut(s)	84, 1597, 1765
HinP1I	GCGC	3 cut(s)	84, 1597, 1765
HindIII	AAGCTT	2 cut(s)	986, 1018
HpaII	CCGG	8 cut(s)	68, 81, 216, 245, 305, 601, 1570, 2116
HphI	GGTGA	7 cut(s)	180, 851, 1448, 1484, 1700, 1745, 1911
Hpy166II	GTNNAC	5 cut(s)	164, 514, 1295, 1514, 1919
Hpy188I	TCNGA	8 cut(s)	12, 770, 979, 984, 1223, 1461, 1997, 2050
Hpy8I	GTNNAC	5 cut(s)	164, 514, 1295, 1514, 1919
HpyAV	CCTTC	7 cut(s)	445, 600, 1225, 1368, 1407, 1463, 1724
HpyCH4III	ACNGT	5 cut(s)	186, 1238, 1518, 1641, 1913
HpyCH4IV	ACGT	4 cut(s)	384, 1027, 1291, 1349
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1189, 1880, 1988
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	4 cut(s)	384, 1027, 1291, 1349
HspAI	GCGC	3 cut(s)	84, 1597, 1765
Kpn2I	TCCGGA	2 cut(s)	304, 600
KroI	GCCGGC	1 cut(s)	244
KroNI	GCCGGC	1 cut(s)	246
Ksp22I	TGATCA	2 cut(s)	528, 979
Kzo9I	GATC	8 cut(s)	193, 483, 503, 528, 609, 853, 979, 2102
LmnI	GCTCC	4 cut(s)	253, 284, 394, 805
Lsp1109I	GCAGC	2 cut(s)	92, 921
LweI	GCATC	6 cut(s)	54, 460, 466, 583, 1186, 1857
MaeI	CTAG	5 cut(s)	405, 435, 545, 1502, 1808
MaeII	ACGT	4 cut(s)	384, 1027, 1291, 1349
MaeIII	GTNAC	3 cut(s)	186, 236, 554
MalI	GATC	8 cut(s)	195, 485, 505, 530, 611, 855, 981, 2104
MboI	GATC	8 cut(s)	193, 483, 503, 528, 609, 853, 979, 2102
MboII	GAAGA	6 cut(s)	368, 433, 560, 635, 870, 1256
MflI	RGATCY	3 cut(s)	609, 853, 2102
MhlI	GDGCHC	3 cut(s)	166, 271, 289
MluCI	AATT	8 cut(s)	571, 586, 723, 1078, 1444, 1475, 1709, 1789
MlyI	GAGTC	5 cut(s)	217, 338, 823, 1130, 1769
MmeI	TCCRAC	2 cut(s)	339, 472
Mph1103I	ATGCAT	1 cut(s)	481
MroI	TCCGGA	2 cut(s)	304, 600
MroNI	GCCGGC	1 cut(s)	244
MseI	TTAA	8 cut(s)	45, 456, 570, 654, 668, 1077, 1388, 1782
MslI	CAYNNNNRTG	2 cut(s)	1530, 1546
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	8 cut(s)	68, 81, 216, 245, 305, 601, 1570, 2116
MspR9I	CCNGG	7 cut(s)	216, 738, 1185, 1434, 1571, 1800, 2117
Mva1269I	GAATGC	3 cut(s)	225, 1455, 1885
MvaI	CCWGG	4 cut(s)	738, 1185, 1434, 1800
MvnI	CGCG	1 cut(s)	1767
MwoI	GCNNNNNNNGC	3 cut(s)	1189, 1880, 1988
NaeI	GCCGGC	1 cut(s)	246
NciI	CCSGG	3 cut(s)	216, 1571, 2117
NdeI	CATATG	1 cut(s)	2026
NdeII	GATC	8 cut(s)	193, 483, 503, 528, 609, 853, 979, 2102
NgoMIV	GCCGGC	1 cut(s)	244
NlaIV	GGNNCC	7 cut(s)	93, 249, 390, 1182, 1335, 1634, 2104
NmuCI	GTSAC	2 cut(s)	186, 236
NsiI	ATGCAT	1 cut(s)	481
NspI	RCATGY	5 cut(s)	112, 244, 800, 1428, 1545
NspV	TTCGAA	1 cut(s)	703
PaeI	GCATGC	2 cut(s)	112, 1428
PagI	TCATGA	1 cut(s)	582
PaqCI	CACCTGC	1 cut(s)	955
PciI	ACATGT	1 cut(s)	1541
PctI	GAATGC	3 cut(s)	225, 1455, 1885
PdiI	GCCGGC	1 cut(s)	246
PfeI	GAWTC	7 cut(s)	5, 311, 1048, 1498, 1649, 1829, 1899
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	3 cut(s)	107, 911, 2059
PleI	GAGTC	5 cut(s)	216, 337, 823, 1129, 1769
PpsI	GAGTC	5 cut(s)	216, 337, 823, 1129, 1769
Ppu21I	YACGTR	1 cut(s)	1350
PscI	ACATGT	1 cut(s)	1541
Psp6I	CCWGG	4 cut(s)	736, 1183, 1432, 1798
PspFI	CCCAGC	2 cut(s)	1629, 1883
PspGI	CCWGG	4 cut(s)	736, 1183, 1432, 1798
PspN4I	GGNNCC	7 cut(s)	93, 249, 390, 1182, 1335, 1634, 2104
PspPI	GGNCC	3 cut(s)	91, 1334, 1633
PsrI	GAACNNNNNNTAC	2 cut(s)	1788, 1820
PstNI	CAGNNNCTG	1 cut(s)	1286
PsuI	RGATCY	3 cut(s)	609, 853, 2102
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	4 cut(s)	58, 579, 1166, 1666
RsaNI	GTAC	4 cut(s)	57, 578, 1165, 1665
RseI	CAYNNNNRTG	2 cut(s)	1530, 1546
SaqAI	TTAA	8 cut(s)	45, 456, 570, 654, 668, 1077, 1388, 1782
SatI	GCNGC	3 cut(s)	106, 910, 2058
Sau3AI	GATC	8 cut(s)	193, 483, 503, 528, 609, 853, 979, 2102
Sau96I	GGNCC	3 cut(s)	91, 1334, 1633
SchI	GAGTC	5 cut(s)	217, 338, 823, 1130, 1769
ScrFI	CCNGG	7 cut(s)	216, 738, 1185, 1434, 1571, 1800, 2117
SduI	GDGCHC	3 cut(s)	166, 271, 289
SfaNI	GCATC	6 cut(s)	54, 460, 466, 583, 1186, 1857
SfuI	TTCGAA	1 cut(s)	703
SmiMI	CAYNNNNRTG	2 cut(s)	1530, 1546
SmlI	CTYRAG	4 cut(s)	833, 865, 1010, 1364
SmoI	CTYRAG	4 cut(s)	833, 865, 1010, 1364
SphI	GCATGC	2 cut(s)	112, 1428
Sse9I	AATT	8 cut(s)	571, 586, 723, 1078, 1444, 1475, 1709, 1789
SsiI	CCGC	1 cut(s)	2057
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	5 cut(s)	405, 435, 545, 1502, 1808
StyD4I	CCNGG	7 cut(s)	214, 736, 1183, 1432, 1569, 1798, 2115
StyI	CCWWGG	2 cut(s)	630, 1083
TaaI	ACNGT	5 cut(s)	186, 1238, 1518, 1641, 1913
TaiI	ACGT	4 cut(s)	387, 1030, 1294, 1352
TaqI	TCGA	7 cut(s)	415, 445, 506, 703, 1051, 1247, 1897
TaqII	GACCGA	1 cut(s)	246
TasI	AATT	8 cut(s)	571, 586, 723, 1078, 1444, 1475, 1709, 1789
TatI	WGTACW	2 cut(s)	577, 1164
TauI	GCSGC	1 cut(s)	2060
TfiI	GAWTC	7 cut(s)	5, 311, 1048, 1498, 1649, 1829, 1899
Tru1I	TTAA	8 cut(s)	45, 456, 570, 654, 668, 1077, 1388, 1782
Tru9I	TTAA	8 cut(s)	45, 456, 570, 654, 668, 1077, 1388, 1782
TscAI	CASTG	2 cut(s)	294, 1492
TseFI	GTSAC	2 cut(s)	186, 236
TseI	GCWGC	2 cut(s)	105, 909
Tsp45I	GTSAC	2 cut(s)	186, 236
TspGWI	ACGGA	2 cut(s)	333, 1145
TspRI	CASTG	2 cut(s)	294, 1492
VneI	GTGCAC	1 cut(s)	162
XapI	RAATTY	3 cut(s)	586, 1475, 1709
XceI	RCATGY	5 cut(s)	112, 244, 800, 1428, 1545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1929
XmiI	GTMKAC	1 cut(s)	1294
XspI	CTAG	5 cut(s)	405, 435, 545, 1502, 1808
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.