Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011103

Physical Location & Seq

Genomic Coordinates Reverse (-)

48300980 .. 48303114

Gene Structure 2135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2031 bp

ATGATGGAATCTCTGAATGGTATTGATAAGTCAAGGGTTTTGGATGTTAAACCTCTGCGTACTTTGATGCCGGTGTTCCCAACCGGCGCTCAGGCCCCTAACTTTAGCTGCATGCCTCCCTTTGGGCATACCCCTAATGGGTTCTCTCCATTTTTCCCATTTAGTGCACCACCACAAGCCACTCAACAGTCACCTGATCTCAATCATGTGAGTCCTCCCGGAATGCAAACACCAGCTGGTCACATGCCGGCTCCACTTCGGTCGTATAGAGCCCCGAACCCATCTGGAGCACTGCCTCATGACTGGAAGGAGGATTCCAACGGAGACGGGGAGTCGTCAATGGGTGGGACGGCCAATGAAGATGGGTATTTTGATGGTCATAAGGACGTGGCTCCTTATCGTGGTTCTAGTTCATCTCGAAAGAAGACCAACAGAGCTAGTTCATCTCGAAAGAAGGTTAAGAAAAGTGGAGATGCTGATGCATTGATCTTTGTTGGAAACAAAGGATCGAGCGTGAACTTTGTTTCTTTGATCAGTCCAGTTCAACTAGAAGATGGTAACAGGGAGTTGGTTAATTATGTACTCATGAATTTTGATGCACTCCGGAGAAGGATCTGCCAGATTGAAGATACCAAGGAAAAGAACACTGACACCATTAAGCGTGCAGATTTAAAAGCTGGTAATATTGCAATGACCAAAAAGGTTCGAACAAACATGAGGAGGAGAATTGGAGTTGTCCCTGGAGTTGAGATTGGGGACATTTTCTTTTTCAGAATGGAAATGTGTGTGGTGGGATTACATGCTCCATCAATGGCTGGTATTGATTACATGACTCTCAAGGGTGATTTGGAAAAAGATCCCATAGCCTTGAGCATTGTTTCTTCAGGAGGCTACGAGGATGAAACAGATAGCAGCGATGTCTTGATATATAGTGGTCAGGGTGGGAATACCAACAACAAAGATAAGCAGGTGGCTGTCTCTGATCAGAAGCTTGAAAGGGGTAATCTTGCTCTTGAGAGAAGCTTGCAACGTGGCAATGAAGTAAGAGTGATTCGAGGGTTGAAAGATGATACTACTCTTAATTCCAAGGTCTATGTCTATGATGGCCTGTACAAAATCCAAGAGTCATGGACGGAGAGGGGAAAATCTGGTGGCAATATGTTCAAGTACAAGTTAGTGAGGGTGCCTGGACAGCCTGATGCCTTTTCAGTTCTGCAAACAATCCGAAAGTGGAAGGACGGTTTATCATCGAGGGCTGGACTTGTTCTTCCAGACCTCACTTCAGGGGCTGAACGTATACCTGTTTCCCTTGTAAATGAAGTTGATAACGAGAAGGGGCCTGCTTATTTCACGTATTTCCCTTCGCTCAAGTATTCTAAATCTTTCACTTTGACACAGCCGTCTCTCGGTTGCAAATGCCGTAGTGCATGCCTCCCAGGTGATATGAATTGCTCTTGCATTCAGAAAAATGAAGGTGAATTTCCTTACACTGTGCGCTTGGAAGTGTTTAGGACAAAGGATAGGGGCTGGGGCCTACGGTCATGGGATTCTATTCGTGCTGGTACTTTTATTTGTGAGTATGCTGGTGAAGTTATAGATGAAGTGAAATTCAAAAATAAAGGGGATGAAGGCGAAACTGATGAGTATATTTTTGATACAAGGCGCGATTATGACTCCTTTAAGTGGAATTATGAACCTGGCTTACTAGATGAGGAGAGTCCTAATGATTCTGTTGAGGATTATAACATCCCATATCCCCTTATCATAAGTGCCAAGAATGCTGGGAATGTAGCTCGATTCATCAATCACGGTTGTTCACCAAATGTTTTTTGGCAACCAGTTCTATATGAACAGAACAATCAGTCTTTTCTCCATATAGCTTTTTTTGCCATCAGACACATTCCCCCTTTGACAGAACTGACATATGATTATGGGATTTCAATGTCTGATGAAGCGGCCAATAACAATGGCCTCCATAGGAAAAAGAAATGTTTATGTGGATCCTCAAAATGCCGGGGTTATTTTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008361 GO:0009987 GO:0010468 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0032259 GO:0032501 GO:0032502 GO:0032535 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051276 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0098687 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00260 ko00310 ko01100 ko04146 ko04211 map00260 map00310 map01100 map04146 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

676

Amino Acids

75.17

Weight (kDa)

7.83

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	243 - 398	4e-57	SAD/SRA domain
Pre-SET	PF05033	428 - 499	2.5e-13	Pre-SET motif
SET	PF00856	509 - 645	1.9e-21	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04940 AT5G04940
fragaria_vesca	FvH4_6g24040
malus_domestica	MD02G1267300.v1.1 MD07G1051900.v1.1
prunus_persica	Prupe.2G055000_v2.0.a1 Prupe.2G069200_v2.0.a1 Prupe.7G185900_v2.0.a1
pyrus_communis	pycom02g22920 pycom07g04020
rosa_chinensis	RchiOBHm_Chr1g0330251
rosa_laevigata	RLG00000029815
rosa_multiflora	Rmu_sc0002485.1_g000001
rosa_roxburghii	Rroxscaffold_4G00320020
rosa_rugosa	Rorug01G0087900
rosa_samantha	Rh1AG106200 Rh1BG084600 Rh1CG102000 Rh1DG110000
rosa_wichuraiana	Rw1G008390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1743
AarI	CACCTGC	1 cut(s)	958
AasI	GACNNNNNNGTC	1 cut(s)	1399
Acc36I	ACCTGC	1 cut(s)	958
AccB1I	GGYRCC	1 cut(s)	1183
AccI	GTMKAC	1 cut(s)	1297
AccII	CGCG	1 cut(s)	1665
AccIII	TCCGGA	1 cut(s)	603
AciI	CCGC	1 cut(s)	1955
AclWI	GGATC	5 cut(s)	514, 620, 851, 1995, 2008
AcoI	YGGCCR	2 cut(s)	351, 1956
AcsI	RAATTY	3 cut(s)	589, 1478, 1607
AcuI	CTGAAG	2 cut(s)	867, 1266
AfaI	GTAC	5 cut(s)	61, 582, 1112, 1169, 1564
AfiI	CCNNNNNNNGG	5 cut(s)	122, 138, 401, 1406, 1683
AgsI	TTSAA	7 cut(s)	545, 626, 995, 1063, 1165, 1612, 1941
AhdI	GACNNNNNGTC	1 cut(s)	331
AjiI	CACGTC	1 cut(s)	388
AjnI	CCWGG	4 cut(s)	739, 1186, 1435, 1696
AluBI	AGCT	8 cut(s)	108, 236, 437, 677, 991, 1023, 1793, 1880
AluI	AGCT	8 cut(s)	108, 236, 437, 677, 991, 1023, 1793, 1880
Alw21I	GWGCWC	2 cut(s)	169, 292
Alw26I	GTCTC	3 cut(s)	318, 982, 1407
Alw44I	GTGCAC	1 cut(s)	165
AlwI	GGATC	5 cut(s)	514, 620, 851, 1995, 2008
AlwNI	CAGNNNCTG	1 cut(s)	1289
Aor13HI	TCCGGA	1 cut(s)	603
AoxI	GGCC	7 cut(s)	93, 351, 1105, 1337, 1531, 1956, 1969
ApaLI	GTGCAC	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	108, 912
ApoI	RAATTY	3 cut(s)	589, 1478, 1607
AspLEI	GCGC	3 cut(s)	89, 1497, 1665
AspS9I	GGNCC	3 cut(s)	94, 1337, 1531
AsuC2I	CCSGG	2 cut(s)	219, 2015
AsuHPI	GGTGA	6 cut(s)	183, 854, 1451, 1487, 1598, 1809
AsuII	TTCGAA	1 cut(s)	706
BaeGI	GKGCMC	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	2000
BanI	GGYRCC	1 cut(s)	1183
BanII	GRGCYC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	431
Bbv12I	GWGCWC	2 cut(s)	169, 292
BbvI	GCAGC	2 cut(s)	95, 924
BccI	CCATC	7 cut(s)	289, 356, 368, 548, 814, 1097, 1898
BceAI	ACGGC	3 cut(s)	366, 1384, 1404
BciT130I	CCWGG	4 cut(s)	741, 1188, 1437, 1698
BclI	TGATCA	2 cut(s)	531, 982
BcnI	CCSGG	2 cut(s)	219, 2015
BcoDI	GTCTC	3 cut(s)	318, 982, 1407
BfaI	CTAG	4 cut(s)	408, 438, 548, 1706
BfoI	RGCGCY	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	958
BisI	GCNGC	3 cut(s)	109, 913, 1956
BlsI	GCNGC	3 cut(s)	110, 914, 1957
Bme1390I	CCNGG	6 cut(s)	219, 741, 1188, 1437, 1698, 2015
BmeRI	GACNNNNNGTC	1 cut(s)	331
BmgBI	CACGTC	1 cut(s)	388
BmgT120I	GGNCC	3 cut(s)	94, 1337, 1531
BmiI	GGNNCC	7 cut(s)	96, 252, 393, 1185, 1338, 1532, 2002
BmrFI	CCNGG	6 cut(s)	219, 741, 1188, 1437, 1698, 2015
BmsI	GCATC	5 cut(s)	57, 463, 469, 586, 1189
BpiI	GAAGAC	1 cut(s)	431
BpmI	CTGGAG	2 cut(s)	306, 762
Bpu10I	CCTNAGC	1 cut(s)	90
Bpu14I	TTCGAA	1 cut(s)	706
BpuEI	CTTGAG	4 cut(s)	821, 889, 1034, 1352
BpuMI	CCSGG	2 cut(s)	219, 2015
BsaAI	YACGTR	1 cut(s)	1353
BsaBI	GATNNNNATC	1 cut(s)	201
BsaJI	CCNNGG	5 cut(s)	633, 739, 1086, 1435, 2014
BsaWI	WCCGGW	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	5 cut(s)	122, 138, 401, 1406, 1683
Bse118I	RCCGGY	3 cut(s)	70, 83, 247
Bse1I	ACTGG	3 cut(s)	308, 539, 1838
Bse3DI	GCAATG	2 cut(s)	696, 1042
Bse8I	GATNNNNATC	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	603
BseBI	CCWGG	4 cut(s)	741, 1188, 1437, 1698
BseDI	CCNNGG	5 cut(s)	633, 739, 1086, 1435, 2014
BseGI	GGATG	4 cut(s)	49, 904, 1630, 1746
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	5 cut(s)	122, 138, 401, 1406, 1683
BseMI	GCAATG	2 cut(s)	696, 1042
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	3 cut(s)	308, 539, 1838
BseRI	GAGGAG	3 cut(s)	733, 736, 1727
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	2 cut(s)	95, 924
BseYI	CCCAGC	2 cut(s)	1527, 1781
BsgI	GTGCAG	1 cut(s)	684
Bsh1236I	CGCG	1 cut(s)	1665
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	7 cut(s)	95, 353, 1107, 1339, 1533, 1958, 1971
BshNI	GGYRCC	1 cut(s)	1183
BsiEI	CGRYCG	1 cut(s)	263
BsiHKAI	GWGCWC	2 cut(s)	169, 292
BsiSI	CCGG	6 cut(s)	71, 84, 219, 248, 604, 2014
BslFI	GGGAC	3 cut(s)	361, 722, 770
BslI	CCNNNNNNNGG	5 cut(s)	122, 138, 401, 1406, 1683
BsmAI	GTCTC	3 cut(s)	318, 982, 1407
BsmBI	CGTCTC	2 cut(s)	318, 1407
BsmFI	GGGAC	3 cut(s)	361, 722, 770
BsmI	GAATGC	3 cut(s)	228, 1458, 1783
BsnI	GGCC	7 cut(s)	95, 353, 1107, 1339, 1533, 1958, 1971
Bsp119I	TTCGAA	1 cut(s)	706
Bsp1286I	GDGCHC	3 cut(s)	169, 274, 292
Bsp13I	TCCGGA	1 cut(s)	603
Bsp1407I	TGTACA	1 cut(s)	1110
Bsp143I	GATC	8 cut(s)	196, 486, 506, 531, 612, 856, 982, 2000
BspACI	CCGC	1 cut(s)	1955
BspANI	GGCC	7 cut(s)	95, 353, 1107, 1339, 1533, 1958, 1971
BspCNI	CTCAG	1 cut(s)	103
BspEI	TCCGGA	1 cut(s)	603
BspFNI	CGCG	1 cut(s)	1665
BspHI	TCATGA	2 cut(s)	298, 585
BspLI	GGNNCC	7 cut(s)	96, 252, 393, 1185, 1338, 1532, 2002
BspMI	ACCTGC	1 cut(s)	958
BspPI	GGATC	5 cut(s)	514, 620, 851, 1995, 2008
BspT104I	TTCGAA	1 cut(s)	706
BspT107I	GGYRCC	1 cut(s)	1183
BsrDI	GCAATG	2 cut(s)	696, 1042
BsrFI	RCCGGY	3 cut(s)	70, 83, 247
BsrGI	TGTACA	1 cut(s)	1110
BsrI	ACTGG	3 cut(s)	308, 539, 1838
BssAI	RCCGGY	3 cut(s)	70, 83, 247
BssECI	CCNNGG	5 cut(s)	633, 739, 1086, 1435, 2014
BssMI	GATC	8 cut(s)	196, 486, 506, 531, 612, 856, 982, 2000
BssNAI	GTATAC	1 cut(s)	1298
BssT1I	CCWWGG	2 cut(s)	633, 1086
Bst1107I	GTATAC	1 cut(s)	1298
Bst2UI	CCWGG	4 cut(s)	741, 1188, 1437, 1698
Bst4CI	ACNGT	5 cut(s)	189, 1241, 1492, 1539, 1811
BstAUI	TGTACA	1 cut(s)	1110
BstBAI	YACGTR	1 cut(s)	1353
BstBI	TTCGAA	1 cut(s)	706
BstC8I	GCNNGC	6 cut(s)	113, 249, 663, 1025, 1341, 1429
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	4 cut(s)	49, 904, 1630, 1746
BstFNI	CGCG	1 cut(s)	1665
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	3 cut(s)	89, 1497, 1665
BstKTI	GATC	8 cut(s)	199, 489, 509, 534, 615, 859, 985, 2003
BstMAI	GTCTC	3 cut(s)	318, 982, 1407
BstMBI	GATC	8 cut(s)	196, 486, 506, 531, 612, 856, 982, 2000
BstMCI	CGRYCG	1 cut(s)	263
BstMWI	GCNNNNNNNGC	3 cut(s)	1192, 1778, 1886
BstNI	CCWGG	4 cut(s)	741, 1188, 1437, 1698
BstNSI	RCATGY	4 cut(s)	115, 247, 803, 1431
BstSCI	CCNGG	6 cut(s)	217, 739, 1186, 1435, 1696, 2013
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	1 cut(s)	1665
BstV1I	GCAGC	2 cut(s)	95, 924
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	3 cut(s)	612, 856, 2000
BstYI	RGATCY	3 cut(s)	612, 856, 2000
BstZ17I	GTATAC	1 cut(s)	1298
BsuRI	GGCC	7 cut(s)	95, 353, 1107, 1339, 1533, 1958, 1971
BtgZI	GCGATG	1 cut(s)	930
BtrI	CACGTC	1 cut(s)	388
BtsCI	GGATG	4 cut(s)	49, 904, 1630, 1746
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	3 cut(s)	290, 645, 1488
BveI	ACCTGC	1 cut(s)	958
Cac8I	GCNNGC	6 cut(s)	113, 249, 663, 1025, 1341, 1429
CaiI	CAGNNNCTG	1 cut(s)	1289
CciI	TCATGA	2 cut(s)	298, 585
CfoI	GCGC	3 cut(s)	89, 1497, 1665
Cfr10I	RCCGGY	3 cut(s)	70, 83, 247
Cfr13I	GGNCC	3 cut(s)	94, 1337, 1531
Csp6I	GTAC	5 cut(s)	60, 581, 1111, 1168, 1563
CviQI	GTAC	5 cut(s)	60, 581, 1111, 1168, 1563
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	8 cut(s)	198, 488, 508, 533, 614, 858, 984, 2002
DpnII	GATC	8 cut(s)	196, 486, 506, 531, 612, 856, 982, 2000
DraI	TTTAAA	1 cut(s)	672
DrdI	GACNNNNNNGTC	1 cut(s)	1399
DriI	GACNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	1399
EaeI	YGGCCR	2 cut(s)	351, 1956
Eam1105I	GACNNNNNGTC	1 cut(s)	331
Eco130I	CCWWGG	2 cut(s)	633, 1086
Eco24I	GRGCYC	1 cut(s)	274
Eco57I	CTGAAG	2 cut(s)	867, 1266
EcoO109I	RGGNCCY	3 cut(s)	94, 1337, 1531
EcoRII	CCWGG	4 cut(s)	739, 1186, 1435, 1696
EcoT14I	CCWWGG	2 cut(s)	633, 1086
EcoT22I	ATGCAT	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	274
ErhI	CCWWGG	2 cut(s)	633, 1086
Esp3I	CGTCTC	2 cut(s)	318, 1407
FaqI	GGGAC	3 cut(s)	361, 722, 770
FauNDI	CATATG	1 cut(s)	1924
FbaI	TGATCA	2 cut(s)	531, 982
FblI	GTMKAC	1 cut(s)	1297
Fnu4HI	GCNGC	3 cut(s)	109, 913, 1956
FokI	GGATG	4 cut(s)	56, 911, 1637, 1733
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	3 cut(s)	109, 913, 1956
FspBI	CTAG	4 cut(s)	408, 438, 548, 1706
GlaI	GCGC	3 cut(s)	88, 1496, 1664
GluI	GCNGC	3 cut(s)	109, 913, 1956
GsaI	CCCAGC	2 cut(s)	1531, 1785
GsuI	CTGGAG	2 cut(s)	306, 762
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	7 cut(s)	95, 353, 1107, 1339, 1533, 1958, 1971
HapII	CCGG	6 cut(s)	71, 84, 219, 248, 604, 2014
HhaI	GCGC	3 cut(s)	89, 1497, 1665
Hin6I	GCGC	3 cut(s)	87, 1495, 1663
HinP1I	GCGC	3 cut(s)	87, 1495, 1663
HindIII	AAGCTT	2 cut(s)	989, 1021
HpaII	CCGG	6 cut(s)	71, 84, 219, 248, 604, 2014
HphI	GGTGA	6 cut(s)	183, 854, 1451, 1487, 1598, 1809
Hpy166II	GTNNAC	4 cut(s)	167, 517, 1298, 1817
Hpy188I	TCNGA	8 cut(s)	15, 773, 982, 987, 1226, 1464, 1895, 1948
Hpy8I	GTNNAC	4 cut(s)	167, 517, 1298, 1817
HpyAV	CCTTC	8 cut(s)	301, 448, 603, 1228, 1327, 1371, 1466, 1622
HpyCH4III	ACNGT	5 cut(s)	189, 1241, 1492, 1539, 1811
HpyCH4IV	ACGT	4 cut(s)	387, 1030, 1294, 1352
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1192, 1778, 1886
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	4 cut(s)	387, 1030, 1294, 1352
HspAI	GCGC	3 cut(s)	87, 1495, 1663
Kpn2I	TCCGGA	1 cut(s)	603
KroI	GCCGGC	1 cut(s)	247
KroNI	GCCGGC	1 cut(s)	249
Ksp22I	TGATCA	2 cut(s)	531, 982
Kzo9I	GATC	8 cut(s)	196, 486, 506, 531, 612, 856, 982, 2000
LmnI	GCTCC	4 cut(s)	256, 287, 397, 808
Lsp1109I	GCAGC	2 cut(s)	95, 924
LweI	GCATC	5 cut(s)	57, 463, 469, 586, 1189
MaeI	CTAG	4 cut(s)	408, 438, 548, 1706
MaeII	ACGT	4 cut(s)	387, 1030, 1294, 1352
MaeIII	GTNAC	3 cut(s)	189, 239, 557
MalI	GATC	8 cut(s)	198, 488, 508, 533, 614, 858, 984, 2002
MboI	GATC	8 cut(s)	196, 486, 506, 531, 612, 856, 982, 2000
MboII	GAAGA	6 cut(s)	371, 436, 563, 638, 873, 1259
MflI	RGATCY	3 cut(s)	612, 856, 2000
MhlI	GDGCHC	3 cut(s)	169, 274, 292
MluCI	AATT	8 cut(s)	574, 589, 726, 1081, 1447, 1478, 1607, 1687
MlyI	GAGTC	6 cut(s)	220, 341, 826, 1133, 1667, 1726
MmeI	TCCRAC	2 cut(s)	342, 475
Mph1103I	ATGCAT	1 cut(s)	484
MroI	TCCGGA	1 cut(s)	603
MroNI	GCCGGC	1 cut(s)	247
MseI	TTAA	7 cut(s)	48, 459, 573, 657, 671, 1080, 1680
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	6 cut(s)	71, 84, 219, 248, 604, 2014
MspR9I	CCNGG	6 cut(s)	219, 741, 1188, 1437, 1698, 2015
Mva1269I	GAATGC	3 cut(s)	228, 1458, 1783
MvaI	CCWGG	4 cut(s)	741, 1188, 1437, 1698
MvnI	CGCG	1 cut(s)	1665
MwoI	GCNNNNNNNGC	3 cut(s)	1192, 1778, 1886
NaeI	GCCGGC	1 cut(s)	249
NciI	CCSGG	2 cut(s)	219, 2015
NdeI	CATATG	1 cut(s)	1924
NdeII	GATC	8 cut(s)	196, 486, 506, 531, 612, 856, 982, 2000
NgoMIV	GCCGGC	1 cut(s)	247
NlaIV	GGNNCC	7 cut(s)	96, 252, 393, 1185, 1338, 1532, 2002
NmuCI	GTSAC	2 cut(s)	189, 239
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	4 cut(s)	115, 247, 803, 1431
NspV	TTCGAA	1 cut(s)	706
PaeI	GCATGC	2 cut(s)	115, 1431
PagI	TCATGA	2 cut(s)	298, 585
PaqCI	CACCTGC	1 cut(s)	958
PctI	GAATGC	3 cut(s)	228, 1458, 1783
PdiI	GCCGGC	1 cut(s)	249
PfeI	GAWTC	6 cut(s)	8, 314, 1051, 1547, 1727, 1797
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	110, 914, 1957
PleI	GAGTC	6 cut(s)	219, 340, 826, 1132, 1667, 1725
PpsI	GAGTC	6 cut(s)	219, 340, 826, 1132, 1667, 1725
Ppu21I	YACGTR	1 cut(s)	1353
PsiI	TTATAA	1 cut(s)	1743
Psp6I	CCWGG	4 cut(s)	739, 1186, 1435, 1696
PspFI	CCCAGC	2 cut(s)	1527, 1781
PspGI	CCWGG	4 cut(s)	739, 1186, 1435, 1696
PspN4I	GGNNCC	7 cut(s)	96, 252, 393, 1185, 1338, 1532, 2002
PspPI	GGNCC	3 cut(s)	94, 1337, 1531
PsrI	GAACNNNNNNTAC	2 cut(s)	1686, 1718
PstNI	CAGNNNCTG	1 cut(s)	1289
PsuI	RGATCY	3 cut(s)	612, 856, 2000
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	5 cut(s)	61, 582, 1112, 1169, 1564
RsaNI	GTAC	5 cut(s)	60, 581, 1111, 1168, 1563
SaqAI	TTAA	7 cut(s)	48, 459, 573, 657, 671, 1080, 1680
SatI	GCNGC	3 cut(s)	109, 913, 1956
Sau3AI	GATC	8 cut(s)	196, 486, 506, 531, 612, 856, 982, 2000
Sau96I	GGNCC	3 cut(s)	94, 1337, 1531
SchI	GAGTC	6 cut(s)	220, 341, 826, 1133, 1667, 1726
ScrFI	CCNGG	6 cut(s)	219, 741, 1188, 1437, 1698, 2015
SduI	GDGCHC	3 cut(s)	169, 274, 292
SfaNI	GCATC	5 cut(s)	57, 463, 469, 586, 1189
SfuI	TTCGAA	1 cut(s)	706
SmlI	CTYRAG	4 cut(s)	836, 868, 1013, 1367
SmoI	CTYRAG	4 cut(s)	836, 868, 1013, 1367
SphI	GCATGC	2 cut(s)	115, 1431
Sse9I	AATT	8 cut(s)	574, 589, 726, 1081, 1447, 1478, 1607, 1687
SsiI	CCGC	1 cut(s)	1955
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	4 cut(s)	408, 438, 548, 1706
StyD4I	CCNGG	6 cut(s)	217, 739, 1186, 1435, 1696, 2013
StyI	CCWWGG	2 cut(s)	633, 1086
TaaI	ACNGT	5 cut(s)	189, 1241, 1492, 1539, 1811
TaiI	ACGT	4 cut(s)	390, 1033, 1297, 1355
TaqI	TCGA	7 cut(s)	418, 448, 509, 706, 1054, 1250, 1795
TaqII	GACCGA	1 cut(s)	249
TasI	AATT	8 cut(s)	574, 589, 726, 1081, 1447, 1478, 1607, 1687
TatI	WGTACW	3 cut(s)	580, 1110, 1167
TauI	GCSGC	1 cut(s)	1958
TfiI	GAWTC	6 cut(s)	8, 314, 1051, 1547, 1727, 1797
Tru1I	TTAA	7 cut(s)	48, 459, 573, 657, 671, 1080, 1680
Tru9I	TTAA	7 cut(s)	48, 459, 573, 657, 671, 1080, 1680
TscAI	CASTG	3 cut(s)	297, 652, 1495
TseFI	GTSAC	2 cut(s)	189, 239
TseI	GCWGC	2 cut(s)	108, 912
Tsp45I	GTSAC	2 cut(s)	189, 239
TspGWI	ACGGA	2 cut(s)	336, 1148
TspRI	CASTG	3 cut(s)	297, 652, 1495
VneI	GTGCAC	1 cut(s)	165
XapI	RAATTY	3 cut(s)	589, 1478, 1607
XceI	RCATGY	4 cut(s)	115, 247, 803, 1431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1827
XmiI	GTMKAC	1 cut(s)	1297
XspI	CTAG	4 cut(s)	408, 438, 548, 1706
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.