pycom02g22920

histone-lysine N-methyltransferase, H3 lysine-9 specific

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
21060587 .. 21061627
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g22920.1

Sequence Viewer

Length: 1041 bp
ATGGAAGGAGGGTCCAGCCAAAACTTCGTTCCTCCTTCAGCTGGGTTTGATAAGTCAAGGGTTTTGGATGTTAGACCTTTGCGTAGTTTGATGCCGGTGTTCCCGGCTGCGTCTCAGGCCCCATCCTTTCCGGGCATGCCTCCCTTTGGCAATACCCCTAATGGGTTTCCTCCGTTTTACCCATTTGGTTTACCGCCAAGCTACCAGGCCTCACCTGATCTAAATAGTGAGATGAGGACGCCAACCGGTCCCATGCCCGCTCCTATCCGGTCATATAGAGCCCCAGCCTCATCTGGCGCCGATGACTTTCCAGAGGATTCCAATGGAGATGGGTACTTTGATCCTCATGTAGGTTCTAGTTCGTCTCGAAAGAAGACCACAAAAGCTAGTTCATCTCGGAAGAAGACCAAGAAAAATGGAGATGGTGATTCGTTAACAAACAATGGGTCAGGTGTGACCTTTGTTTCTGTTATGAGTTCATTTCAAATTGAAGATGGTAACAGGGAGTTGGTTAATTATGTGCTCATGAATTTTGATGCACTCCGGAGAAGGATATGCCAGATTGAAGATAACAAGGAATCGAAAACTGGGGTTATTAAGCGTGCAGATTTGAAAGCTGGTGGCATCGTGATGAGCAAAAAGGTTCGGACAAACATGAGGAGGAGAGTTGGGGTTATCCCTGGAGTTGAGATTGGCGACATTTTCTTTTTCCGAATGGAAATGTGTGCAGTCGGATTACATGCTCCATCTATGGCTGGAATTGACTACATGACTGGCAATGGTGATGGTGACAAAGATCCAGTGGCCTTAAGCATTGTTTCTTCAGGGGGCTATGATGATGAGGCAGAGGCCAGCGATGTCTTGATATACAGTGGTCAGGGTGGAAATAGCAACAGCAAAGACAAAGATAGGGAGGTTGCTGATCAGAAGCTTGAAAGGGGTAATCTTGCTCTTCAGAGAAGCTTGCATCATGGAAATGAAGTACGAGTGATTCGGGGCGTGAAAGATGATGTTAGTTCAACAATAAAGATCGATCTATGA

Protein Analysis

347

Amino Acids

37.3

Weight (kDa)

7.72

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 223 - 337 4.3e-40 SAD/SRA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011103)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AccBSI CCGCTC 1 cut(s) 260
AccIII TCCGGA 1 cut(s) 543
AciI CCGC 2 cut(s) 194, 258
AclWI GGATC 2 cut(s) 335, 791
AcsI RAATTY 1 cut(s) 529
AcuI CTGAAG 3 cut(s) 21, 807, 938
AcyI GRCGYC 2 cut(s) 239, 297
AfaI GTAC 2 cut(s) 335, 984
AfiI CCNNNNNNNGG 4 cut(s) 41, 146, 162, 350
AflII CTTAAG 1 cut(s) 808
AgeI ACCGGT 1 cut(s) 245
AgsI TTSAA 6 cut(s) 485, 491, 566, 613, 935, 1020
AjnI CCWGG 2 cut(s) 204, 679
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 6 cut(s) 41, 201, 386, 617, 931, 963
AluI AGCT 6 cut(s) 41, 201, 386, 617, 931, 963
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 2 cut(s) 117, 369
AlwI GGATC 2 cut(s) 335, 791
Aor13HI TCCGGA 1 cut(s) 543
AoxI GGCC 4 cut(s) 117, 207, 804, 849
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 1 cut(s) 529
ArsI GACNNNNNNTTYG 2 cut(s) 431, 463
AsiGI ACCGGT 1 cut(s) 245
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 3 cut(s) 12, 118, 248
AsuC2I CCSGG 2 cut(s) 104, 132
AsuHPI GGTGA 4 cut(s) 204, 437, 794, 800
AvaII GGWCC 2 cut(s) 12, 248
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 283
BbsI GAAGAC 2 cut(s) 380, 410
Bbv12I GWGCWC 1 cut(s) 525
BbvI GCAGC 1 cut(s) 94
BccI CCATC 6 cut(s) 130, 323, 416, 488, 754, 779
BciT130I CCWGG 2 cut(s) 206, 681
BclI TGATCA 1 cut(s) 922
BcnI CCSGG 2 cut(s) 104, 132
BcoDI GTCTC 2 cut(s) 117, 369
BfaI CTAG 2 cut(s) 357, 387
BfoI RGCGCY 1 cut(s) 300
BfrI CTTAAG 1 cut(s) 808
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 4 cut(s) 104, 132, 206, 681
Bme18I GGWCC 2 cut(s) 12, 248
BmgT120I GGNCC 3 cut(s) 12, 118, 248
BmiI GGNNCC 4 cut(s) 13, 120, 250, 298
BmrFI CCNGG 4 cut(s) 104, 132, 206, 681
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 4 cut(s) 81, 526, 633, 976
BmuI ACTGGG 1 cut(s) 597
BpiI GAAGAC 2 cut(s) 380, 410
BpmI CTGGAG 1 cut(s) 702
BpuMI CCSGG 2 cut(s) 104, 132
Bsa29I ATCGAT 1 cut(s) 1032
BsaHI GRCGYC 2 cut(s) 239, 297
BsaJI CCNNGG 1 cut(s) 679
BsaWI WCCGGW 3 cut(s) 245, 267, 543
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 146, 162, 350
Bse118I RCCGGY 2 cut(s) 94, 245
Bse1I ACTGG 3 cut(s) 592, 778, 800
Bse3DI GCAATG 1 cut(s) 784
BseAI TCCGGA 1 cut(s) 543
BseBI CCWGG 2 cut(s) 206, 681
BseCI ATCGAT 1 cut(s) 1032
BseDI CCNNGG 1 cut(s) 679
BseGI GGATG 2 cut(s) 73, 122
BseLI CCNNNNNNNGG 4 cut(s) 41, 146, 162, 350
BseMI GCAATG 1 cut(s) 784
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 3 cut(s) 592, 778, 800
BseRI GAGGAG 2 cut(s) 673, 676
BseXI GCAGC 1 cut(s) 94
BseYI CCCAGC 2 cut(s) 41, 283
BsgI GTGCAG 2 cut(s) 624, 747
BshFI GGCC 4 cut(s) 119, 209, 806, 851
BshNI GGYRCC 1 cut(s) 296
BshTI ACCGGT 1 cut(s) 245
BshVI ATCGAT 1 cut(s) 1032
BsiHKAI GWGCWC 1 cut(s) 525
BsiSI CCGG 6 cut(s) 95, 104, 131, 246, 268, 544
BslFI GGGAC 1 cut(s) 234
BslI CCNNNNNNNGG 4 cut(s) 41, 146, 162, 350
BsmAI GTCTC 2 cut(s) 117, 369
BsmBI CGTCTC 2 cut(s) 117, 369
BsmFI GGGAC 1 cut(s) 234
BsnI GGCC 4 cut(s) 119, 209, 806, 851
Bsp1286I GDGCHC 2 cut(s) 283, 525
Bsp13I TCCGGA 1 cut(s) 543
Bsp143I GATC 6 cut(s) 217, 340, 796, 922, 1029, 1033
BspACI CCGC 2 cut(s) 194, 258
BspANI GGCC 4 cut(s) 119, 209, 806, 851
BspCNI CTCAG 1 cut(s) 127
BspDI ATCGAT 1 cut(s) 1032
BspEI TCCGGA 1 cut(s) 543
BspHI TCATGA 1 cut(s) 525
BspLI GGNNCC 4 cut(s) 13, 120, 250, 298
BspPI GGATC 2 cut(s) 335, 791
BspQI GCTCTTC 1 cut(s) 957
BspT107I GGYRCC 1 cut(s) 296
BspTI CTTAAG 1 cut(s) 808
BsrBI CCGCTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 784
BsrFI RCCGGY 2 cut(s) 94, 245
BsrI ACTGG 3 cut(s) 592, 778, 800
BssAI RCCGGY 2 cut(s) 94, 245
BssECI CCNNGG 1 cut(s) 679
BssMI GATC 6 cut(s) 217, 340, 796, 922, 1029, 1033
BssNI GRCGYC 2 cut(s) 239, 297
Bst2UI CCWGG 2 cut(s) 206, 681
Bst4CI ACNGT 1 cut(s) 872
Bst6I CTCTTC 1 cut(s) 957
BstACI GRCGYC 2 cut(s) 239, 297
BstAFI CTTAAG 1 cut(s) 808
BstC8I GCNNGC 5 cut(s) 137, 258, 603, 853, 965
BstDEI CTNAG 1 cut(s) 114
BstENI CCTNNNNNAGG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 73, 122
BstH2I RGCGCY 1 cut(s) 300
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 6 cut(s) 220, 343, 799, 925, 1032, 1036
BstMAI GTCTC 2 cut(s) 117, 369
BstMBI GATC 6 cut(s) 217, 340, 796, 922, 1029, 1033
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 2 cut(s) 206, 681
BstNSI RCATGY 2 cut(s) 139, 743
BstSCI CCNGG 4 cut(s) 102, 130, 204, 679
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 2 cut(s) 380, 410
BstX2I RGATCY 1 cut(s) 796
BstYI RGATCY 1 cut(s) 796
Bsu15I ATCGAT 1 cut(s) 1032
BsuRI GGCC 4 cut(s) 119, 209, 806, 851
BsuTUI ATCGAT 1 cut(s) 1032
BtgZI GCGATG 1 cut(s) 870
BtsCI GGATG 2 cut(s) 73, 122
BtsIMutI CAGTG 2 cut(s) 807, 877
Cac8I GCNNGC 5 cut(s) 137, 258, 603, 853, 965
CciI TCATGA 1 cut(s) 525
CfoI GCGC 1 cut(s) 299
Cfr10I RCCGGY 2 cut(s) 94, 245
Cfr13I GGNCC 3 cut(s) 12, 118, 248
ClaI ATCGAT 1 cut(s) 1032
CseI GACGC 2 cut(s) 99, 247
Csp6I GTAC 2 cut(s) 334, 983
CspAI ACCGGT 1 cut(s) 245
CviAII CATG 8 cut(s) 136, 253, 347, 526, 655, 740, 769, 971
CviQI GTAC 2 cut(s) 334, 983
DdeI CTNAG 1 cut(s) 114
DinI GGCGCC 1 cut(s) 298
DpnI GATC 6 cut(s) 219, 342, 798, 924, 1031, 1035
DpnII GATC 6 cut(s) 217, 340, 796, 922, 1029, 1033
Eam1104I CTCTTC 1 cut(s) 957
EarI CTCTTC 1 cut(s) 957
Eco147I AGGCCT 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 2 cut(s) 12, 248
Eco57I CTGAAG 3 cut(s) 21, 807, 938
EcoNI CCTNNNNNAGG 1 cut(s) 348
EcoO109I RGGNCCY 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 204, 679
EcoT38I GRGCYC 1 cut(s) 283
EgeI GGCGCC 1 cut(s) 298
EheI GGCGCC 1 cut(s) 298
Esp3I CGTCTC 2 cut(s) 117, 369
FaeI CATG 8 cut(s) 139, 256, 350, 529, 658, 743, 772, 974
FaqI GGGAC 1 cut(s) 234
FatI CATG 8 cut(s) 135, 252, 346, 525, 654, 739, 768, 970
FauI CCCGC 1 cut(s) 265
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 2 cut(s) 80, 109
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 2 cut(s) 357, 387
GlaI GCGC 1 cut(s) 298
GluI GCNGC 1 cut(s) 108
GsaI CCCAGC 2 cut(s) 45, 287
GsuI CTGGAG 1 cut(s) 702
HaeII RGCGCY 1 cut(s) 300
HaeIII GGCC 4 cut(s) 119, 209, 806, 851
HapII CCGG 6 cut(s) 95, 104, 131, 246, 268, 544
HgaI GACGC 2 cut(s) 99, 247
HhaI GCGC 1 cut(s) 299
Hin1I GRCGYC 2 cut(s) 239, 297
Hin1II CATG 8 cut(s) 139, 256, 350, 529, 658, 743, 772, 974
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HindIII AAGCTT 2 cut(s) 929, 961
HinfI GANTC 4 cut(s) 317, 428, 578, 991
HpaI GTTAAC 1 cut(s) 435
HpaII CCGG 6 cut(s) 95, 104, 131, 246, 268, 544
HphI GGTGA 4 cut(s) 204, 437, 794, 800
Hpy166II GTNNAC 2 cut(s) 191, 435
Hpy188I TCNGA 6 cut(s) 399, 648, 713, 734, 927, 957
Hpy188III TCNNGA 6 cut(s) 311, 366, 526, 544, 628, 862
Hpy8I GTNNAC 2 cut(s) 191, 435
HpyAV CCTTC 2 cut(s) 45, 543
HpyCH4III ACNGT 1 cut(s) 872
HpyCH4V TGCA 4 cut(s) 539, 605, 728, 967
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 114
Hsp92I GRCGYC 2 cut(s) 239, 297
Hsp92II CATG 8 cut(s) 139, 256, 350, 529, 658, 743, 772, 974
HspAI GCGC 1 cut(s) 297
KasI GGCGCC 1 cut(s) 296
Kpn2I TCCGGA 1 cut(s) 543
Ksp22I TGATCA 1 cut(s) 922
KspAI GTTAAC 1 cut(s) 435
Kzo9I GATC 6 cut(s) 217, 340, 796, 922, 1029, 1033
LguI GCTCTTC 1 cut(s) 957
LmnI GCTCC 2 cut(s) 265, 748
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 4 cut(s) 81, 526, 633, 976
MaeI CTAG 2 cut(s) 357, 387
MaeIII GTNAC 3 cut(s) 454, 497, 788
MalI GATC 6 cut(s) 219, 342, 798, 924, 1031, 1035
MbiI CCGCTC 1 cut(s) 260
MboI GATC 6 cut(s) 217, 340, 796, 922, 1029, 1033
MboII GAAGA 7 cut(s) 385, 412, 415, 503, 578, 813, 944
MflI RGATCY 1 cut(s) 796
MhlI GDGCHC 2 cut(s) 283, 525
MluCI AATT 4 cut(s) 486, 514, 529, 759
Mly113I GGCGCC 1 cut(s) 297
MmeI TCCRAC 1 cut(s) 712
MroI TCCGGA 1 cut(s) 543
MseI TTAA 4 cut(s) 434, 513, 597, 809
MslI CAYNNNNRTG 2 cut(s) 629, 975
MspA1I CMGCKG 1 cut(s) 41
MspCI CTTAAG 1 cut(s) 808
MspI CCGG 6 cut(s) 95, 104, 131, 246, 268, 544
MspR9I CCNGG 4 cut(s) 104, 132, 206, 681
MvaI CCWGG 2 cut(s) 206, 681
MwoI GCNNNNNNNGC 1 cut(s) 116
NarI GGCGCC 1 cut(s) 297
NciI CCSGG 2 cut(s) 104, 132
NdeII GATC 6 cut(s) 217, 340, 796, 922, 1029, 1033
NlaIII CATG 8 cut(s) 139, 256, 350, 529, 658, 743, 772, 974
NlaIV GGNNCC 4 cut(s) 13, 120, 250, 298
NmuCI GTSAC 2 cut(s) 454, 788
NspI RCATGY 2 cut(s) 139, 743
PaeI GCATGC 1 cut(s) 139
PagI TCATGA 1 cut(s) 525
PceI AGGCCT 1 cut(s) 209
PciSI GCTCTTC 1 cut(s) 957
PfeI GAWTC 4 cut(s) 317, 428, 578, 991
PinAI ACCGGT 1 cut(s) 245
PkrI GCNGC 1 cut(s) 109
PluTI GGCGCC 1 cut(s) 300
Psp6I CCWGG 2 cut(s) 204, 679
PspFI CCCAGC 2 cut(s) 41, 283
PspGI CCWGG 2 cut(s) 204, 679
PspN4I GGNNCC 4 cut(s) 13, 120, 250, 298
PspPI GGNCC 3 cut(s) 12, 118, 248
PsuI RGATCY 1 cut(s) 796
PvuII CAGCTG 1 cut(s) 41
RsaI GTAC 2 cut(s) 335, 984
RsaNI GTAC 2 cut(s) 334, 983
RseI CAYNNNNRTG 2 cut(s) 629, 975
SapI GCTCTTC 1 cut(s) 957
SaqAI TTAA 4 cut(s) 434, 513, 597, 809
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 6 cut(s) 217, 340, 796, 922, 1029, 1033
Sau96I GGNCC 3 cut(s) 12, 118, 248
ScrFI CCNGG 4 cut(s) 104, 132, 206, 681
SduI GDGCHC 2 cut(s) 283, 525
SfaNI GCATC 4 cut(s) 81, 526, 633, 976
SfoI GGCGCC 1 cut(s) 298
SinI GGWCC 2 cut(s) 12, 248
SmiMI CAYNNNNRTG 2 cut(s) 629, 975
SmlI CTYRAG 1 cut(s) 808
SmoI CTYRAG 1 cut(s) 808
SphI GCATGC 1 cut(s) 139
Sse9I AATT 4 cut(s) 486, 514, 529, 759
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 2 cut(s) 194, 258
SspDI GGCGCC 1 cut(s) 296
SspMI CTAG 2 cut(s) 357, 387
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 4 cut(s) 102, 130, 204, 679
TaaI ACNGT 1 cut(s) 872
TaqI TCGA 3 cut(s) 367, 581, 1032
TasI AATT 4 cut(s) 486, 514, 529, 759
TfiI GAWTC 4 cut(s) 317, 428, 578, 991
Tru1I TTAA 4 cut(s) 434, 513, 597, 809
Tru9I TTAA 4 cut(s) 434, 513, 597, 809
TscAI CASTG 2 cut(s) 807, 877
TseFI GTSAC 2 cut(s) 454, 788
TseI GCWGC 1 cut(s) 107
Tsp45I GTSAC 2 cut(s) 454, 788
TspDTI ATGAA 4 cut(s) 381, 468, 542, 993
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 2 cut(s) 807, 877
Vha464I CTTAAG 1 cut(s) 808
VpaK11BI GGWCC 2 cut(s) 12, 248
XagI CCTNNNNNAGG 1 cut(s) 348
XapI RAATTY 1 cut(s) 529
XceI RCATGY 2 cut(s) 139, 743
XspI CTAG 2 cut(s) 357, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.