Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012542

Physical Location & Seq

Genomic Coordinates Forward (+)

18936052 .. 18938885

Gene Structure 2834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G204500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGGAAAAGTTGAGGACCATTTTGGCTTGGTGGTGAGTCGACCTCAGAATTCAACATACACACAGCCACTGCTTAGCCAAGCCACGTTTCCTCTCCTGTCACTTTTTTCCTTCTATTTATTCACCTCTTTTTTCTCTGTGTGCCCTCTGCGATCATCATTGAGCTTTGGACAGTTGAAGATGGGGGATGAAGGGGGTTCCTTACACGTGTCAAACGATAGTAACGGTCTTGATCATGACAACGGGGATCAGAGCCGTATACTGGACATATACCCTCTCAGTTCCTATTACTTTTCTTCCAAGGAAGCCCTTCCTATCAAGGACGAGTCTGTAGCTGATCGTCTTCAGAGAATGAAGTCCAACTATGCTGCTTATGGATTGAGGACGTGTGTGGAGGCAGTTATTTTGGTTGAGTTGTTCAAACATCCTCATATACTGCTGTTGCAAGTAAGAAATTGCATGTTTAAGCTTCCGGGGGGTCGCTTAAGGCCTGGTGAATCAGAGATCGATGGATTGAAACGGAAGCTATCAAGGAAACTTTGTGTCAATCCAGATGCTGATGGGATTCCTTGGGAGGTAGGGGAATGTCTTGGGGTATGGTGGAGGCATGATTTTGACACATTGCTCTGTCGGGACTTGCCCTCTAAAGTTAAAAACCCAAAGGAGTGCACCAAACTGTTTATTGTGAGGCTGCCAGACTGTCGGAAGTTCGTTGCGCCGAAAAACCTAAAATTGCTTGCTATTCCATTGTGCCAGATCAATAAAAATCAGGAGACGTATGGACCTGTTATATCAGGTGTTCCGGAGATGCTATCGAAGTTCACCATCAACATCATCGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NUDIX_2

Protein Analysis

282

Amino Acids

31.73

Weight (kDa)

8.31

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29820
fragaria_vesca	FvH4_1g08030 FvH4_1g08030
malus_domestica	MD02G1085100.v1.1 MD15G1212200.v1.1
prunus_persica	Prupe.7G204500_v2.0.a1 Prupe.7G204500_v2.0.a1
pyrus_communis	pycom02g06790 pycom15g18850
rosa_chinensis	RchiOBHm_Chr2g0094081
rosa_laevigata	RLG00000016454
rosa_multiflora	Rmu_ssc0000469.1_g000005
rosa_roxburghii	Rroxscaffold_2G00147490
rosa_rugosa	Rorug02G0040800 Rorug02G0040800
rosa_samantha	Rh2AG088400 Rh2BG088500 Rh2CG090900 Rh2DG087500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	40, 259
AccIII	TCCGGA	1 cut(s)	802
AclWI	GGATC	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	329
AcvI	CACGTG	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	262
AflII	CTTAAG	1 cut(s)	484
AflIII	ACRYGT	3 cut(s)	205, 207, 386
AgsI	TTSAA	4 cut(s)	54, 178, 421, 517
AjiI	CACGTC	1 cut(s)	387
AjnI	CCWGG	1 cut(s)	490
AjuI	GAANNNNNNNTTGG	2 cut(s)	72, 104
AluBI	AGCT	4 cut(s)	165, 335, 469, 526
AluI	AGCT	4 cut(s)	165, 335, 469, 526
Alw21I	GWGCWC	1 cut(s)	671
Alw26I	GTCTC	1 cut(s)	767
Alw44I	GTGCAC	1 cut(s)	667
AlwI	GGATC	1 cut(s)	255
AlwNI	CAGNNNCTG	2 cut(s)	70, 557
Aor13HI	TCCGGA	1 cut(s)	802
AoxI	GGCC	1 cut(s)	488
ApaLI	GTGCAC	1 cut(s)	667
ApeKI	GCWGC	2 cut(s)	368, 691
ApoI	RAATTY	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	718
AspS9I	GGNCC	2 cut(s)	16, 782
AsuC2I	CCSGG	1 cut(s)	474
AsuHPI	GGTGA	4 cut(s)	46, 115, 506, 814
AvaII	GGWCC	2 cut(s)	16, 782
BaeGI	GKGCMC	2 cut(s)	146, 671
BbrPI	CACGTG	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	671
BbvI	GCAGC	2 cut(s)	355, 678
BccI	CCATC	4 cut(s)	175, 503, 554, 833
BceAI	ACGGC	1 cut(s)	240
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	474
BcoDI	GTCTC	1 cut(s)	767
BfmI	CTRYAG	1 cut(s)	330
BfrI	CTTAAG	1 cut(s)	484
BisI	GCNGC	2 cut(s)	369, 692
BlpI	GCTNAGC	1 cut(s)	74
BlsI	GCNGC	2 cut(s)	370, 693
Bme1390I	CCNGG	2 cut(s)	474, 492
Bme18I	GGWCC	2 cut(s)	16, 782
BmgBI	CACGTC	1 cut(s)	387
BmgT120I	GGNCC	2 cut(s)	16, 782
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	2 cut(s)	474, 492
BmsI	GCATC	2 cut(s)	544, 798
BpiI	GAAGAC	1 cut(s)	335
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
Bpu1102I	GCTNAGC	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	474
Bsa29I	ATCGAT	1 cut(s)	507
BsaAI	YACGTR	1 cut(s)	208
BsaJI	CCNNGG	3 cut(s)	300, 473, 569
BsaWI	WCCGGW	1 cut(s)	802
Bsc4I	CCNNNNNNNGG	1 cut(s)	262
Bse1I	ACTGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	620
BseAI	TCCGGA	1 cut(s)	802
BseBI	CCWGG	1 cut(s)	492
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	3 cut(s)	300, 473, 569
BseGI	GGATG	2 cut(s)	193, 424
BseLI	CCNNNNNNNGG	1 cut(s)	262
BseMI	GCAATG	1 cut(s)	620
BseMII	CTCAG	2 cut(s)	59, 292
BseNI	ACTGG	1 cut(s)	267
BseSI	GKGCMC	2 cut(s)	146, 671
BseXI	GCAGC	2 cut(s)	355, 678
BshFI	GGCC	1 cut(s)	490
BshVI	ATCGAT	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	671
BsiSI	CCGG	2 cut(s)	473, 803
BslFI	GGGAC	1 cut(s)	647
BslI	CCNNNNNNNGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	767
BsmBI	CGTCTC	1 cut(s)	767
BsmFI	GGGAC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	490
Bsp1286I	GDGCHC	2 cut(s)	146, 671
Bsp13I	TCCGGA	1 cut(s)	802
Bsp143I	GATC	6 cut(s)	152, 232, 247, 337, 504, 756
Bsp1720I	GCTNAGC	1 cut(s)	74
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	2 cut(s)	58, 291
BspDI	ATCGAT	1 cut(s)	507
BspEI	TCCGGA	1 cut(s)	802
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	199
BspPI	GGATC	1 cut(s)	255
BspTI	CTTAAG	1 cut(s)	484
BsrDI	GCAATG	1 cut(s)	620
BsrI	ACTGG	1 cut(s)	267
BssECI	CCNNGG	3 cut(s)	300, 473, 569
BssMI	GATC	6 cut(s)	152, 232, 247, 337, 504, 756
BssNAI	GTATAC	1 cut(s)	260
BssT1I	CCWWGG	2 cut(s)	300, 569
Bst1107I	GTATAC	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	4 cut(s)	174, 227, 678, 701
BstAFI	CTTAAG	1 cut(s)	484
BstBAI	YACGTR	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	738
BstDEI	CTNAG	3 cut(s)	45, 74, 278
BstF5I	GGATG	2 cut(s)	193, 424
BstHHI	GCGC	1 cut(s)	718
BstKTI	GATC	6 cut(s)	155, 235, 250, 340, 507, 759
BstMAI	GTCTC	1 cut(s)	767
BstMBI	GATC	6 cut(s)	152, 232, 247, 337, 504, 756
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	2 cut(s)	472, 490
BstSFI	CTRYAG	1 cut(s)	330
BstSLI	GKGCMC	2 cut(s)	146, 671
BstV1I	GCAGC	2 cut(s)	355, 678
BstV2I	GAAGAC	1 cut(s)	335
BstZ17I	GTATAC	1 cut(s)	260
Bsu15I	ATCGAT	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	490
BsuTUI	ATCGAT	1 cut(s)	507
BtrI	CACGTC	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	193, 424
BtsI	GCAGTG	1 cut(s)	68
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	738
CaiI	CAGNNNCTG	2 cut(s)	70, 557
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	1 cut(s)	718
Cfr13I	GGNCC	2 cut(s)	16, 782
ClaI	ATCGAT	1 cut(s)	507
CviAII	CATG	3 cut(s)	236, 460, 608
DdeI	CTNAG	3 cut(s)	45, 74, 278
DpnI	GATC	6 cut(s)	154, 234, 249, 339, 506, 758
DpnII	GATC	6 cut(s)	152, 232, 247, 337, 504, 756
Eco130I	CCWWGG	2 cut(s)	300, 569
Eco147I	AGGCCT	1 cut(s)	490
Eco47I	GGWCC	2 cut(s)	16, 782
Eco57I	CTGAAG	1 cut(s)	329
Eco72I	CACGTG	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	2 cut(s)	300, 569
ErhI	CCWWGG	2 cut(s)	300, 569
Esp3I	CGTCTC	1 cut(s)	767
FaeI	CATG	3 cut(s)	239, 463, 611
FaqI	GGGAC	1 cut(s)	647
FatI	CATG	3 cut(s)	235, 459, 607
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	2 cut(s)	40, 259
Fnu4HI	GCNGC	2 cut(s)	369, 692
FokI	GGATG	2 cut(s)	200, 411
Fsp4HI	GCNGC	2 cut(s)	369, 692
GlaI	GCGC	1 cut(s)	717
GluI	GCNGC	2 cut(s)	369, 692
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	2 cut(s)	473, 803
HhaI	GCGC	1 cut(s)	718
Hin1II	CATG	3 cut(s)	239, 463, 611
Hin6I	GCGC	1 cut(s)	716
HinP1I	GCGC	1 cut(s)	716
HincII	GTYRAC	1 cut(s)	41
HindII	GTYRAC	1 cut(s)	41
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	4 cut(s)	37, 326, 497, 565
HpaII	CCGG	2 cut(s)	473, 803
HphI	GGTGA	4 cut(s)	46, 115, 506, 814
Hpy166II	GTNNAC	4 cut(s)	41, 260, 669, 822
Hpy188I	TCNGA	5 cut(s)	48, 252, 348, 502, 705
Hpy188III	TCNNGA	6 cut(s)	230, 236, 551, 632, 770, 803
Hpy8I	GTNNAC	4 cut(s)	41, 260, 669, 822
HpyAV	CCTTC	3 cut(s)	121, 185, 320
HpyCH4III	ACNGT	4 cut(s)	174, 227, 678, 701
HpyCH4IV	ACGT	4 cut(s)	86, 207, 386, 776
HpyCH4V	TGCA	3 cut(s)	445, 459, 669
HpyF3I	CTNAG	3 cut(s)	45, 74, 278
HpySE526I	ACGT	4 cut(s)	86, 207, 386, 776
Hsp92II	CATG	3 cut(s)	239, 463, 611
HspAI	GCGC	1 cut(s)	716
Kpn2I	TCCGGA	1 cut(s)	802
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	6 cut(s)	152, 232, 247, 337, 504, 756
Lsp1109I	GCAGC	2 cut(s)	355, 678
LweI	GCATC	2 cut(s)	544, 798
MaeII	ACGT	4 cut(s)	86, 207, 386, 776
MaeIII	GTNAC	2 cut(s)	99, 221
MalI	GATC	6 cut(s)	154, 234, 249, 339, 506, 758
MboI	GATC	6 cut(s)	152, 232, 247, 337, 504, 756
MboII	GAAGA	3 cut(s)	190, 288, 335
MhlI	GDGCHC	2 cut(s)	146, 671
MluCI	AATT	3 cut(s)	49, 454, 731
MlyI	GAGTC	2 cut(s)	46, 335
MmeI	TCCRAC	2 cut(s)	384, 683
MroI	TCCGGA	1 cut(s)	802
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	3 cut(s)	465, 485, 651
MspCI	CTTAAG	1 cut(s)	484
MspI	CCGG	2 cut(s)	473, 803
MspR9I	CCNGG	2 cut(s)	474, 492
MvaI	CCWGG	1 cut(s)	492
NciI	CCSGG	1 cut(s)	474
NdeII	GATC	6 cut(s)	152, 232, 247, 337, 504, 756
NlaIII	CATG	3 cut(s)	239, 463, 611
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	463
PagI	TCATGA	1 cut(s)	235
PceI	AGGCCT	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	497, 565
PkrI	GCNGC	2 cut(s)	370, 693
PleI	GAGTC	2 cut(s)	45, 334
PmaCI	CACGTG	1 cut(s)	208
PmlI	CACGTG	1 cut(s)	208
PpsI	GAGTC	2 cut(s)	45, 334
Ppu21I	YACGTR	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	490
PspCI	CACGTG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	16, 782
PstNI	CAGNNNCTG	2 cut(s)	70, 557
SalI	GTCGAC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	465, 485, 651
SatI	GCNGC	2 cut(s)	369, 692
Sau3AI	GATC	6 cut(s)	152, 232, 247, 337, 504, 756
Sau96I	GGNCC	2 cut(s)	16, 782
SchI	GAGTC	2 cut(s)	46, 335
ScrFI	CCNGG	2 cut(s)	474, 492
SduI	GDGCHC	2 cut(s)	146, 671
SfaNI	GCATC	2 cut(s)	544, 798
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	2 cut(s)	16, 782
SmlI	CTYRAG	1 cut(s)	484
SmoI	CTYRAG	1 cut(s)	484
Sse9I	AATT	3 cut(s)	49, 454, 731
SseBI	AGGCCT	1 cut(s)	490
StuI	AGGCCT	1 cut(s)	490
StyD4I	CCNGG	2 cut(s)	472, 490
StyI	CCWWGG	2 cut(s)	300, 569
TaaI	ACNGT	4 cut(s)	174, 227, 678, 701
TaiI	ACGT	4 cut(s)	89, 210, 389, 779
TaqI	TCGA	4 cut(s)	40, 507, 815, 837
TasI	AATT	3 cut(s)	49, 454, 731
TfiI	GAWTC	2 cut(s)	497, 565
Tru1I	TTAA	3 cut(s)	465, 485, 651
Tru9I	TTAA	3 cut(s)	465, 485, 651
TscAI	CASTG	1 cut(s)	75
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	2 cut(s)	368, 691
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	2 cut(s)	204, 368
TspGWI	ACGGA	1 cut(s)	535
TspRI	CASTG	1 cut(s)	75
Vha464I	CTTAAG	1 cut(s)	484
VneI	GTGCAC	1 cut(s)	667
VpaK11BI	GGWCC	2 cut(s)	16, 782
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	463
XmiI	GTMKAC	2 cut(s)	40, 259
XmnI	GAANNNNTTC	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.