Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012542

Physical Location & Seq

Genomic Coordinates Reverse (-)

13375572 .. 13377177

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g18850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGGGATGAAAGGGGTTCCTCACACGTGTCAGACAGTAACAGTCTTGATCACCACGACAACGATGATCAGAGCCGTACGCTGGACATATACCCTCTCAGCAGCTACTACTTCGCTTCCAAGGAAGCCATTCCTGTCAAGGACGAAACTCCAGCTGATCGTCTTCACAGATTGAAGTCCAATTATGCTGCTTATGGATTGAGGACTTGTGTGGAAGCAGTTATTCTGGTTGAGTTGTTCAAACATCCTCATGTGCTGCTCTTGCAAATAAGAAACTGCATTTTTAAGCTTCCCGGGGGTCGCTTAAGACCCGGCGAATCAGAGATGGACGGATTGAAACGTAAGCTGTCGAGGAAGCTTTGTATCAATGCAGATGGTGATGGGATTCCTTGGGAGGTTGGGGAGTGTCTTGGGGTATGGTGGAGGCACGACTTCGAAACATTGCTCTGTCGAGACTTGCCACCTCGAGTTGAAAACCCAAAGGAGTGCACCAAACTATTCATCGTGAAGTTACCAGATTGTCGGAAGTTCATTGCGCCAAAAAACCAAAAATTGCTCGCTATTCCCTTGTGCCAGATCGCCAAAAACAACGAGACGTATGGACCTGTTATATCAGGTGTTCCGGAGATGCTATCAACGTTTACCATCAACATTATAGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NUDIX_2

Protein Analysis

222

Amino Acids

25.06

Weight (kDa)

6.39

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29820
fragaria_vesca	FvH4_1g08030 FvH4_1g08030
malus_domestica	MD02G1085100.v1.1 MD15G1212200.v1.1
prunus_persica	Prupe.7G204500_v2.0.a1 Prupe.7G204500_v2.0.a1
pyrus_communis	pycom02g06790 pycom15g18850
rosa_chinensis	RchiOBHm_Chr2g0094081
rosa_laevigata	RLG00000016454
rosa_multiflora	Rmu_ssc0000469.1_g000005
rosa_roxburghii	Rroxscaffold_2G00147490
rosa_rugosa	Rorug02G0040800 Rorug02G0040800
rosa_samantha	Rh2AG088400 Rh2BG088500 Rh2CG090900 Rh2DG087500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	622
AclI	AACGTT	1 cut(s)	638
AcvI	CACGTG	1 cut(s)	28
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflII	CTTAAG	1 cut(s)	304
AflIII	ACRYGT	2 cut(s)	25, 27
AgsI	TTSAA	4 cut(s)	175, 241, 337, 473
AluBI	AGCT	5 cut(s)	105, 155, 289, 346, 358
AluI	AGCT	5 cut(s)	105, 155, 289, 346, 358
Alw21I	GWGCWC	1 cut(s)	491
Alw26I	GTCTC	2 cut(s)	447, 587
Alw44I	GTGCAC	1 cut(s)	487
Ama87I	CYCGRG	2 cut(s)	293, 465
Aor13HI	TCCGGA	1 cut(s)	622
ApaLI	GTGCAC	1 cut(s)	487
ApeKI	GCWGC	3 cut(s)	102, 188, 256
Asp700I	GAANNNNTTC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	538
AspS9I	GGNCC	1 cut(s)	602
AsuC2I	CCSGG	3 cut(s)	294, 295, 312
AsuHPI	GGTGA	2 cut(s)	44, 389
AsuII	TTCGAA	1 cut(s)	435
AvaI	CYCGRG	2 cut(s)	293, 465
AvaII	GGWCC	1 cut(s)	602
BaeGI	GKGCMC	1 cut(s)	491
BbrPI	CACGTG	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	491
BbvI	GCAGC	3 cut(s)	114, 175, 243
BccI	CCATC	4 cut(s)	319, 368, 374, 653
BceAI	ACGGC	1 cut(s)	60
BclI	TGATCA	2 cut(s)	49, 67
BcnI	CCSGG	3 cut(s)	294, 295, 312
BcoDI	GTCTC	2 cut(s)	447, 587
BfrI	CTTAAG	1 cut(s)	304
BisI	GCNGC	3 cut(s)	103, 189, 257
BlsI	GCNGC	3 cut(s)	104, 190, 258
Bme1390I	CCNGG	3 cut(s)	294, 295, 312
Bme18I	GGWCC	1 cut(s)	602
BmeT110I	CYCGRG	2 cut(s)	293, 465
BmgT120I	GGNCC	1 cut(s)	602
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	3 cut(s)	294, 295, 312
BmsI	GCATC	1 cut(s)	618
BpiI	GAAGAC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	135
Bpu14I	TTCGAA	1 cut(s)	435
BpuMI	CCSGG	3 cut(s)	294, 295, 312
BsaAI	YACGTR	1 cut(s)	28
BsaJI	CCNNGG	4 cut(s)	120, 293, 294, 389
BsaWI	WCCGGW	1 cut(s)	622
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse3DI	GCAATG	2 cut(s)	440, 531
BseAI	TCCGGA	1 cut(s)	622
BseDI	CCNNGG	4 cut(s)	120, 293, 294, 389
BseGI	GGATG	2 cut(s)	13, 244
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	2 cut(s)	440, 531
BseMII	CTCAG	1 cut(s)	112
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	3 cut(s)	114, 175, 243
BsiHKAI	GWGCWC	1 cut(s)	491
BsiHKCI	CYCGRG	2 cut(s)	293, 465
BsiSI	CCGG	3 cut(s)	294, 312, 623
BsiWI	CGTACG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	2 cut(s)	447, 587
BsmBI	CGTCTC	1 cut(s)	587
BsoBI	CYCGRG	2 cut(s)	293, 465
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp13I	TCCGGA	1 cut(s)	622
Bsp143I	GATC	4 cut(s)	49, 67, 157, 576
BspCNI	CTCAG	1 cut(s)	111
BspEI	TCCGGA	1 cut(s)	622
BspLI	GGNNCC	1 cut(s)	19
BspT104I	TTCGAA	1 cut(s)	435
BspTI	CTTAAG	1 cut(s)	304
BsrDI	GCAATG	2 cut(s)	440, 531
BssECI	CCNNGG	4 cut(s)	120, 293, 294, 389
BssMI	GATC	4 cut(s)	49, 67, 157, 576
BssT1I	CCWWGG	2 cut(s)	120, 389
Bst4CI	ACNGT	2 cut(s)	38, 44
BstAFI	CTTAAG	1 cut(s)	304
BstBAI	YACGTR	1 cut(s)	28
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	13, 244
BstHHI	GCGC	1 cut(s)	538
BstKTI	GATC	4 cut(s)	52, 70, 160, 579
BstMAI	GTCTC	2 cut(s)	447, 587
BstMBI	GATC	4 cut(s)	49, 67, 157, 576
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstSCI	CCNGG	3 cut(s)	292, 293, 310
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	3 cut(s)	114, 175, 243
BstV2I	GAAGAC	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	13, 244
Cac8I	GCNNGC	1 cut(s)	558
CfoI	GCGC	1 cut(s)	538
Cfr13I	GGNCC	1 cut(s)	602
Cfr9I	CCCGGG	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	78
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	7 cut(s)	75, 105, 128, 155, 289, 346, 358
CviKI_1	RGCY	7 cut(s)	75, 105, 128, 155, 289, 346, 358
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	4 cut(s)	51, 69, 159, 578
DpnII	GATC	4 cut(s)	49, 67, 157, 576
Eco130I	CCWWGG	2 cut(s)	120, 389
Eco47I	GGWCC	1 cut(s)	602
Eco72I	CACGTG	1 cut(s)	28
Eco88I	CYCGRG	2 cut(s)	293, 465
EcoT14I	CCWWGG	2 cut(s)	120, 389
ErhI	CCWWGG	2 cut(s)	120, 389
Esp3I	CGTCTC	1 cut(s)	587
FaeI	CATG	1 cut(s)	254
FaiI	YATR	9 cut(s)	89, 91, 186, 195, 252, 418, 600, 611, 656
FatI	CATG	1 cut(s)	250
FbaI	TGATCA	2 cut(s)	49, 67
Fnu4HI	GCNGC	3 cut(s)	103, 189, 257
FokI	GGATG	2 cut(s)	20, 231
Fsp4HI	GCNGC	3 cut(s)	103, 189, 257
GlaI	GCGC	1 cut(s)	537
GluI	GCNGC	3 cut(s)	103, 189, 257
GsuI	CTGGAG	1 cut(s)	135
HapII	CCGG	3 cut(s)	294, 312, 623
HhaI	GCGC	1 cut(s)	538
Hin1II	CATG	1 cut(s)	254
Hin6I	GCGC	1 cut(s)	536
HinP1I	GCGC	1 cut(s)	536
HindIII	AAGCTT	2 cut(s)	287, 356
HinfI	GANTC	2 cut(s)	317, 385
HpaII	CCGG	3 cut(s)	294, 312, 623
HphI	GGTGA	2 cut(s)	44, 389
Hpy166II	GTNNAC	2 cut(s)	489, 642
Hpy188I	TCNGA	4 cut(s)	34, 72, 322, 525
Hpy188III	TCNNGA	4 cut(s)	47, 452, 505, 623
Hpy8I	GTNNAC	2 cut(s)	489, 642
HpyCH4III	ACNGT	2 cut(s)	38, 44
HpyCH4IV	ACGT	4 cut(s)	27, 340, 596, 638
HpyCH4V	TGCA	4 cut(s)	265, 279, 371, 489
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	1 cut(s)	98
HpySE526I	ACGT	4 cut(s)	27, 340, 596, 638
Hsp92II	CATG	1 cut(s)	254
HspAI	GCGC	1 cut(s)	536
Kpn2I	TCCGGA	1 cut(s)	622
Ksp22I	TGATCA	2 cut(s)	49, 67
Kzo9I	GATC	4 cut(s)	49, 67, 157, 576
Lsp1109I	GCAGC	3 cut(s)	114, 175, 243
LweI	GCATC	1 cut(s)	618
MaeII	ACGT	4 cut(s)	27, 340, 596, 638
MaeIII	GTNAC	2 cut(s)	38, 510
MalI	GATC	4 cut(s)	51, 69, 159, 578
MboI	GATC	4 cut(s)	49, 67, 157, 576
MboII	GAAGA	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	2 cut(s)	181, 551
MmeI	TCCRAC	1 cut(s)	503
MnlI	CCTC	8 cut(s)	31, 105, 195, 258, 345, 388, 417, 474
MroI	TCCGGA	1 cut(s)	622
MroXI	GAANNNNTTC	1 cut(s)	129
MseI	TTAA	3 cut(s)	285, 305, 664
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	155
MspCI	CTTAAG	1 cut(s)	304
MspI	CCGG	3 cut(s)	294, 312, 623
MspR9I	CCNGG	3 cut(s)	294, 295, 312
MwoI	GCNNNNNNNGC	1 cut(s)	262
NciI	CCSGG	3 cut(s)	294, 295, 312
NdeII	GATC	4 cut(s)	49, 67, 157, 576
NlaIII	CATG	1 cut(s)	254
NlaIV	GGNNCC	1 cut(s)	19
NspV	TTCGAA	1 cut(s)	435
PaeR7I	CTCGAG	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	317, 385
Pfl23II	CGTACG	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	104, 190, 258
PmaCI	CACGTG	1 cut(s)	28
PmlI	CACGTG	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	28
Psp1406I	AACGTT	1 cut(s)	638
PspCI	CACGTG	1 cut(s)	28
PspLI	CGTACG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	602
PspXI	VCTCGAGB	1 cut(s)	465
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	3 cut(s)	285, 305, 664
SatI	GCNGC	3 cut(s)	103, 189, 257
Sau3AI	GATC	4 cut(s)	49, 67, 157, 576
Sau96I	GGNCC	1 cut(s)	602
ScrFI	CCNGG	3 cut(s)	294, 295, 312
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	1 cut(s)	618
Sfr274I	CTCGAG	1 cut(s)	465
SfuI	TTCGAA	1 cut(s)	435
SinI	GGWCC	1 cut(s)	602
SlaI	CTCGAG	1 cut(s)	465
SmaI	CCCGGG	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	304, 465
SmoI	CTYRAG	2 cut(s)	304, 465
Sse9I	AATT	2 cut(s)	181, 551
StyD4I	CCNGG	3 cut(s)	292, 293, 310
StyI	CCWWGG	2 cut(s)	120, 389
TaaI	ACNGT	2 cut(s)	38, 44
TaiI	ACGT	4 cut(s)	30, 343, 599, 641
TaqI	TCGA	4 cut(s)	350, 435, 451, 466
TasI	AATT	2 cut(s)	181, 551
TfiI	GAWTC	2 cut(s)	317, 385
Tru1I	TTAA	3 cut(s)	285, 305, 664
Tru9I	TTAA	3 cut(s)	285, 305, 664
TseI	GCWGC	3 cut(s)	102, 188, 256
TspDTI	ATGAA	3 cut(s)	24, 490, 520
TspGWI	ACGGA	1 cut(s)	345
TspMI	CCCGGG	1 cut(s)	293
Vha464I	CTTAAG	1 cut(s)	304
VneI	GTGCAC	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	602
XhoI	CTCGAG	1 cut(s)	465
XmaI	CCCGGG	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.