Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0012542

Physical Location & Seq

Genomic Coordinates Reverse (-)

4710407 .. 4711952

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAAAGGGGTTCCTTACACGTGTCAGACAGCAACGGTCTTGATCGATCGTGACAGCGATGATCAGAGCCGTACGCTGGACATATACCCTCTCAGCAGCTACTACTTCGCTTCCAAGGAAGCCATTCCTGTCAAGGTCGAAGCTCCGATCGATCGTCTTCACAGATTAAAGTCCAATTATGCTGCTTATGGATTGAGGACTTGTGTGGAAGCGGTTCTTCTGGTTGAGTTGTTCAAACATCCTCATGTGCTACTCTTGCAAATAAGAAACTGCATTTTTAAGCTGCCCGGGGGCCGCCTAAGACCCGGCGAATCAGAGATCAACGGATTGAAACGTAAGCTGTCGAGGAAGCTATGTATCAATGCTGATGGTGATGGGATTCCTTGGGAGGTTGGGGAATGTCTTGGGGCATGGTTGAGGCACGACTTCGAATCATTGCTCTGCCGGGACTTGCCAACCAGAGTTGAAAGCCCAAAGGAGTGCACAAAACTCTACGTTGTCCAGTTACCAGATTGTTGGAAGTTCGTTGCGCCAAAAAACCAAAAACTGCTTGCTATTCCCTTGTGCCAGATCGCCAAAAACAACGAGACGTATGGACCTATAATATCAGGTGTTCCAGAGATGCTATCAAAGTTTACCATCAACATTGTAGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

NUDIX_2

Protein Analysis

220

Amino Acids

24.76

Weight (kDa)

8.32

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012542)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29820
fragaria_vesca	FvH4_1g08030 FvH4_1g08030
malus_domestica	MD02G1085100.v1.1 MD15G1212200.v1.1
prunus_persica	Prupe.7G204500_v2.0.a1 Prupe.7G204500_v2.0.a1
pyrus_communis	pycom02g06790 pycom15g18850
rosa_chinensis	RchiOBHm_Chr2g0094081
rosa_laevigata	RLG00000016454
rosa_multiflora	Rmu_ssc0000469.1_g000005
rosa_roxburghii	Rroxscaffold_2G00147490
rosa_rugosa	Rorug02G0040800 Rorug02G0040800
rosa_samantha	Rh2AG088400 Rh2BG088500 Rh2CG090900 Rh2DG087500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	212, 295
AcvI	CACGTG	1 cut(s)	21
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflIII	ACRYGT	2 cut(s)	18, 20
AgsI	TTSAA	3 cut(s)	235, 331, 467
AluBI	AGCT	5 cut(s)	99, 143, 283, 340, 352
AluI	AGCT	5 cut(s)	99, 143, 283, 340, 352
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	1 cut(s)	581
Alw44I	GTGCAC	1 cut(s)	481
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	292
ApaLI	GTGCAC	1 cut(s)	481
ApeKI	GCWGC	3 cut(s)	96, 182, 283
Asp700I	GAANNNNTTC	2 cut(s)	123, 213
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	2 cut(s)	292, 596
AsuC2I	CCSGG	4 cut(s)	288, 289, 306, 446
AsuHPI	GGTGA	1 cut(s)	383
AsuII	TTCGAA	1 cut(s)	429
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	485
BbrPI	CACGTG	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	3 cut(s)	108, 169, 270
BccI	CCATC	3 cut(s)	362, 368, 647
BceAI	ACGGC	1 cut(s)	54
BclI	TGATCA	1 cut(s)	61
BcnI	CCSGG	4 cut(s)	288, 289, 306, 446
BcoDI	GTCTC	1 cut(s)	581
BisI	GCNGC	4 cut(s)	97, 183, 284, 295
BlsI	GCNGC	4 cut(s)	98, 184, 285, 296
Bme1390I	CCNGG	4 cut(s)	288, 289, 306, 446
Bme18I	GGWCC	1 cut(s)	596
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	292, 596
BmiI	GGNNCC	2 cut(s)	12, 293
BmrFI	CCNGG	4 cut(s)	288, 289, 306, 446
BmsI	GCATC	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	149
Bpu14I	TTCGAA	1 cut(s)	429
BpuMI	CCSGG	4 cut(s)	288, 289, 306, 446
Bsa29I	ATCGAT	2 cut(s)	45, 150
BsaAI	YACGTR	1 cut(s)	21
BsaJI	CCNNGG	4 cut(s)	114, 287, 288, 383
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	502
Bse3DI	GCAATG	1 cut(s)	434
BseCI	ATCGAT	2 cut(s)	45, 150
BseDI	CCNNGG	4 cut(s)	114, 287, 288, 383
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	106
BseNI	ACTGG	1 cut(s)	502
BseSI	GKGCMC	1 cut(s)	485
BseXI	GCAGC	3 cut(s)	108, 169, 270
Bsh1285I	CGRYCG	3 cut(s)	49, 150, 154
BshFI	GGCC	1 cut(s)	294
BshVI	ATCGAT	2 cut(s)	45, 150
BsiEI	CGRYCG	3 cut(s)	49, 150, 154
BsiHKAI	GWGCWC	1 cut(s)	485
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	3 cut(s)	288, 306, 445
BsiWI	CGTACG	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	581
BsmBI	CGTCTC	1 cut(s)	581
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	294
BsoBI	CYCGRG	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp143I	GATC	7 cut(s)	42, 46, 61, 147, 151, 318, 570
BspACI	CCGC	2 cut(s)	212, 295
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	105
BspDI	ATCGAT	2 cut(s)	45, 150
BspLI	GGNNCC	2 cut(s)	12, 293
BspT104I	TTCGAA	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	4 cut(s)	114, 287, 288, 383
BssMI	GATC	7 cut(s)	42, 46, 61, 147, 151, 318, 570
BssT1I	CCWWGG	2 cut(s)	114, 383
Bst4CI	ACNGT	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	2 cut(s)	92, 299
BstF5I	GGATG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	7 cut(s)	45, 49, 64, 150, 154, 321, 573
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	7 cut(s)	42, 46, 61, 147, 151, 318, 570
BstMCI	CGRYCG	3 cut(s)	49, 150, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstSCI	CCNGG	4 cut(s)	286, 287, 304, 444
BstSLI	GKGCMC	1 cut(s)	485
BstV1I	GCAGC	3 cut(s)	108, 169, 270
BstV2I	GAAGAC	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	516
Bsu15I	ATCGAT	2 cut(s)	45, 150
BsuRI	GGCC	1 cut(s)	294
BsuTUI	ATCGAT	2 cut(s)	45, 150
BtgZI	GCGATG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	552
CfoI	GCGC	1 cut(s)	532
Cfr13I	GGNCC	2 cut(s)	292, 596
Cfr9I	CCCGGG	1 cut(s)	287
ClaI	ATCGAT	2 cut(s)	45, 150
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	2 cut(s)	245, 411
CviJI	RGCY	9 cut(s)	69, 99, 122, 143, 283, 294, 340, 352, 471
CviKI_1	RGCY	9 cut(s)	69, 99, 122, 143, 283, 294, 340, 352, 471
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	2 cut(s)	92, 299
DpnI	GATC	7 cut(s)	44, 48, 63, 149, 153, 320, 572
DpnII	GATC	7 cut(s)	42, 46, 61, 147, 151, 318, 570
Eco130I	CCWWGG	2 cut(s)	114, 383
Eco47I	GGWCC	1 cut(s)	596
Eco72I	CACGTG	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	287
EcoT14I	CCWWGG	2 cut(s)	114, 383
ErhI	CCWWGG	2 cut(s)	114, 383
Esp3I	CGTCTC	1 cut(s)	581
FaeI	CATG	2 cut(s)	248, 414
FaiI	YATR	9 cut(s)	83, 85, 180, 189, 246, 355, 412, 594, 602
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	244, 410
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	4 cut(s)	97, 183, 284, 295
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	4 cut(s)	97, 183, 284, 295
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	4 cut(s)	97, 183, 284, 295
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	3 cut(s)	288, 306, 445
HhaI	GCGC	1 cut(s)	532
Hin1II	CATG	2 cut(s)	248, 414
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HinfI	GANTC	3 cut(s)	311, 379, 431
HpaII	CCGG	3 cut(s)	288, 306, 445
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	483, 636
Hpy188I	TCNGA	4 cut(s)	27, 66, 147, 316
Hpy188III	TCNNGA	3 cut(s)	40, 50, 617
Hpy8I	GTNNAC	2 cut(s)	483, 636
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	4 cut(s)	20, 334, 495, 590
HpyCH4V	TGCA	3 cut(s)	259, 273, 483
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	2 cut(s)	92, 299
HpySE526I	ACGT	4 cut(s)	20, 334, 495, 590
Hsp92II	CATG	2 cut(s)	248, 414
HspAI	GCGC	1 cut(s)	530
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	7 cut(s)	42, 46, 61, 147, 151, 318, 570
LmnI	GCTCC	1 cut(s)	148
Lsp1109I	GCAGC	3 cut(s)	108, 169, 270
LweI	GCATC	1 cut(s)	612
MaeII	ACGT	4 cut(s)	20, 334, 495, 590
MaeIII	GTNAC	2 cut(s)	50, 504
MalI	GATC	7 cut(s)	44, 48, 63, 149, 153, 320, 572
MboI	GATC	7 cut(s)	42, 46, 61, 147, 151, 318, 570
MboII	GAAGA	2 cut(s)	149, 209
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	1 cut(s)	175
MmeI	TCCRAC	1 cut(s)	497
MnlI	CCTC	6 cut(s)	99, 189, 252, 339, 382, 411
MroXI	GAANNNNTTC	2 cut(s)	123, 213
MseI	TTAA	3 cut(s)	167, 279, 658
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	3 cut(s)	288, 306, 445
MspR9I	CCNGG	4 cut(s)	288, 289, 306, 446
MwoI	GCNNNNNNNGC	1 cut(s)	256
NciI	CCSGG	4 cut(s)	288, 289, 306, 446
NdeII	GATC	7 cut(s)	42, 46, 61, 147, 151, 318, 570
NlaIII	CATG	2 cut(s)	248, 414
NlaIV	GGNNCC	2 cut(s)	12, 293
NmuCI	GTSAC	1 cut(s)	50
NspV	TTCGAA	1 cut(s)	429
PdmI	GAANNNNTTC	2 cut(s)	123, 213
PfeI	GAWTC	3 cut(s)	311, 379, 431
Pfl23II	CGTACG	1 cut(s)	71
PkrI	GCNGC	4 cut(s)	98, 184, 285, 296
Ple19I	CGATCG	3 cut(s)	49, 150, 154
PmaCI	CACGTG	1 cut(s)	21
PmlI	CACGTG	1 cut(s)	21
Ppu21I	YACGTR	1 cut(s)	21
PspCI	CACGTG	1 cut(s)	21
PspLI	CGTACG	1 cut(s)	71
PspN4I	GGNNCC	2 cut(s)	12, 293
PspPI	GGNCC	2 cut(s)	292, 596
PvuI	CGATCG	3 cut(s)	49, 150, 154
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	3 cut(s)	167, 279, 658
SatI	GCNGC	4 cut(s)	97, 183, 284, 295
Sau3AI	GATC	7 cut(s)	42, 46, 61, 147, 151, 318, 570
Sau96I	GGNCC	2 cut(s)	292, 596
ScrFI	CCNGG	4 cut(s)	288, 289, 306, 446
SduI	GDGCHC	1 cut(s)	485
SfaNI	GCATC	1 cut(s)	612
SfuI	TTCGAA	1 cut(s)	429
SinI	GGWCC	1 cut(s)	596
SmaI	CCCGGG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	243
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	2 cut(s)	212, 295
StyD4I	CCNGG	4 cut(s)	286, 287, 304, 444
StyI	CCWWGG	2 cut(s)	114, 383
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	4 cut(s)	23, 337, 498, 593
TaqI	TCGA	5 cut(s)	45, 138, 150, 344, 429
TasI	AATT	1 cut(s)	175
TauI	GCSGC	1 cut(s)	297
TfiI	GAWTC	3 cut(s)	311, 379, 431
Tru1I	TTAA	3 cut(s)	167, 279, 658
Tru9I	TTAA	3 cut(s)	167, 279, 658
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	3 cut(s)	96, 182, 283
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	339
TspMI	CCCGGG	1 cut(s)	287
VneI	GTGCAC	1 cut(s)	481
VpaK11BI	GGWCC	1 cut(s)	596
XmaI	CCCGGG	1 cut(s)	287
XmnI	GAANNNNTTC	2 cut(s)	123, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.