Rh2CG090900

Cleavage and polyadenylation specificity factor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012542
Physical Location & Seq
Reverse (-)
7481512 .. 7482961
1450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG090900.1

Sequence Viewer

Length: 666 bp
ATGGGGGAAGAAGGGGGTTCTGTACGCGTGTCAGACAGTAACGTTGTTGATCATACTCACAACGATGATCTGAGCCGTCAACTGGACATATACCCTCTCAGTTGCTACTACTTTGGATCCAAGGAAGCCATTCCTTTCAAGGATGAGACTTTAGCTGATCGTGTTCAGAGATTGAACTCCAACTATGCTGGTCATGGATTGAGGACTTGTGTAGAAGCAGTTATTTTGGTCGAGTTATTCAAACATCCTCATATACTACTCTTGCAAGTAAGAAATTGCATCTTTAAGCTTCCTGGAGGTCGCTTAAGACCTGGTGAATTAGAGATTGATGGCTTGAAAAGAAAACTGTCGAGGAAGCTTTGTGTCAATGCTGATGCTGATGGGATTGCTTGGGAGGTGGGGGAATGCCTTGATGTATGGTGGAGGCCTGAATTCGAAACATTGCCTTGTCGAGACTTGCCGTCTACAGATAAAAACCCAAAGGAGTGCACGAAACTCTTTCTTGTAAAGTTGCCAGAAAGTCGCAAGTTCATTGTACCCAAAAACCTAAAATTGCTGGCTATTCCATTGTGCCAGATCAACAAAAATCGCGAGACGTATGGACCTATTATCTCCGGTGTTCCAGAGCTGCTCTCAGATTTCACCTTCAACATTATAGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
NUDIX_2

Protein Analysis

221

Amino Acids

25.05

Weight (kDa)

6.23

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX_2 PF13869 27 - 214 3e-65 Nucleotide hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 464
AccII CGCG 2 cut(s) 27, 591
AclI AACGTT 1 cut(s) 42
AclWI GGATC 2 cut(s) 111, 124
AcsI RAATTY 1 cut(s) 431
AfaI GTAC 2 cut(s) 24, 537
AfiI CCNNNNNNNGG 1 cut(s) 82
AflII CTTAAG 1 cut(s) 304
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 5 cut(s) 139, 175, 241, 337, 649
AhdI GACNNNNNGTC 1 cut(s) 460
AjnI CCWGG 2 cut(s) 292, 310
AluBI AGCT 5 cut(s) 155, 289, 358, 628, 662
AluI AGCT 5 cut(s) 155, 289, 358, 628, 662
Alw21I GWGCWC 1 cut(s) 491
Alw26I GTCTC 3 cut(s) 140, 447, 587
Alw44I GTGCAC 1 cut(s) 487
AlwI GGATC 2 cut(s) 111, 124
AoxI GGCC 1 cut(s) 425
ApaLI GTGCAC 1 cut(s) 487
ApeKI GCWGC 1 cut(s) 628
ApoI RAATTY 1 cut(s) 431
Asp700I GAANNNNTTC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 602
AsuHPI GGTGA 2 cut(s) 326, 634
AsuII TTCGAA 1 cut(s) 435
AvaII GGWCC 1 cut(s) 602
BaeGI GKGCMC 1 cut(s) 491
BamHI GGATCC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 491
BbvI GCAGC 1 cut(s) 615
BccI CCATC 2 cut(s) 323, 374
BceAI ACGGC 2 cut(s) 60, 445
BciT130I CCWGG 2 cut(s) 294, 312
BclI TGATCA 1 cut(s) 49
BcoDI GTCTC 3 cut(s) 140, 447, 587
BfmI CTRYAG 1 cut(s) 465
BfrI CTTAAG 1 cut(s) 304
BisI GCNGC 1 cut(s) 629
BlsI GCNGC 1 cut(s) 630
Bme1390I CCNGG 2 cut(s) 294, 312
Bme18I GGWCC 1 cut(s) 602
BmeRI GACNNNNNGTC 1 cut(s) 460
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 2 cut(s) 294, 312
BmsI GCATC 2 cut(s) 288, 364
BplI GAGNNNNNCTC 2 cut(s) 617, 649
BpmI CTGGAG 1 cut(s) 315
Bpu14I TTCGAA 1 cut(s) 435
BsaJI CCNNGG 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 614
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 440
BseBI CCWGG 2 cut(s) 294, 312
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 2 cut(s) 148, 244
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 440
BseMII CTCAG 3 cut(s) 62, 112, 648
BseNI ACTGG 1 cut(s) 87
BseSI GKGCMC 1 cut(s) 491
BseXI GCAGC 1 cut(s) 615
Bsh1236I CGCG 2 cut(s) 27, 591
BshFI GGCC 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 491
BsiSI CCGG 1 cut(s) 615
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 3 cut(s) 140, 447, 587
BsmBI CGTCTC 1 cut(s) 587
BsmI GAATGC 1 cut(s) 410
BsnI GGCC 1 cut(s) 427
Bsp119I TTCGAA 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 491
Bsp143I GATC 5 cut(s) 49, 67, 116, 157, 576
Bsp68I TCGCGA 1 cut(s) 591
BspANI GGCC 1 cut(s) 427
BspCNI CTCAG 3 cut(s) 63, 111, 647
BspFNI CGCG 2 cut(s) 27, 591
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 2 cut(s) 111, 124
BspT104I TTCGAA 1 cut(s) 435
BspTI CTTAAG 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 440
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 5 cut(s) 49, 67, 116, 157, 576
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 2 cut(s) 294, 312
Bst4CI ACNGT 2 cut(s) 38, 348
BstAFI CTTAAG 1 cut(s) 304
BstBI TTCGAA 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 558
BstDEI CTNAG 3 cut(s) 71, 98, 634
BstF5I GGATG 2 cut(s) 148, 244
BstFNI CGCG 2 cut(s) 27, 591
BstKTI GATC 5 cut(s) 52, 70, 119, 160, 579
BstMAI GTCTC 3 cut(s) 140, 447, 587
BstMBI GATC 5 cut(s) 49, 67, 116, 157, 576
BstNI CCWGG 2 cut(s) 294, 312
BstSCI CCNGG 2 cut(s) 292, 310
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 1 cut(s) 491
BstUI CGCG 2 cut(s) 27, 591
BstV1I GCAGC 1 cut(s) 615
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 1 cut(s) 427
BtsCI GGATG 2 cut(s) 148, 244
BtuMI TCGCGA 1 cut(s) 591
Cac8I GCNNGC 1 cut(s) 558
Cfr13I GGNCC 1 cut(s) 602
CsiI ACCWGGT 1 cut(s) 310
Csp6I GTAC 2 cut(s) 23, 536
CviAII CATG 1 cut(s) 194
CviQI GTAC 2 cut(s) 23, 536
DdeI CTNAG 3 cut(s) 71, 98, 634
DpnI GATC 5 cut(s) 51, 69, 118, 159, 578
DpnII GATC 5 cut(s) 49, 67, 116, 157, 576
DriI GACNNNNNGTC 1 cut(s) 460
Eam1105I GACNNNNNGTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 120
Eco147I AGGCCT 1 cut(s) 427
Eco47I GGWCC 1 cut(s) 602
EcoRI GAATTC 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 292, 310
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 587
FaeI CATG 1 cut(s) 197
FatI CATG 1 cut(s) 193
FbaI TGATCA 1 cut(s) 49
FblI GTMKAC 1 cut(s) 464
Fnu4HI GCNGC 1 cut(s) 629
FokI GGATG 2 cut(s) 155, 231
Fsp4HI GCNGC 1 cut(s) 629
GluI GCNGC 1 cut(s) 629
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 427
HapII CCGG 1 cut(s) 615
Hin1II CATG 1 cut(s) 197
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HindIII AAGCTT 3 cut(s) 287, 356, 660
HpaII CCGG 1 cut(s) 615
HphI GGTGA 2 cut(s) 326, 634
Hpy166II GTNNAC 3 cut(s) 80, 465, 489
Hpy188I TCNGA 4 cut(s) 34, 72, 168, 637
Hpy188III TCNNGA 3 cut(s) 452, 590, 623
Hpy8I GTNNAC 3 cut(s) 80, 465, 489
HpyAV CCTTC 2 cut(s) 5, 655
HpyCH4III ACNGT 2 cut(s) 38, 348
HpyCH4IV ACGT 2 cut(s) 42, 596
HpyCH4V TGCA 3 cut(s) 265, 279, 489
HpyF3I CTNAG 3 cut(s) 71, 98, 634
HpySE526I ACGT 2 cut(s) 42, 596
Hsp92II CATG 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 49
Kzo9I GATC 5 cut(s) 49, 67, 116, 157, 576
Lsp1109I GCAGC 1 cut(s) 615
LweI GCATC 2 cut(s) 288, 364
MabI ACCWGGT 1 cut(s) 310
MaeII ACGT 2 cut(s) 42, 596
MaeIII GTNAC 1 cut(s) 38
MalI GATC 5 cut(s) 51, 69, 118, 159, 578
MboI GATC 5 cut(s) 49, 67, 116, 157, 576
MboII GAAGA 1 cut(s) 20
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 4 cut(s) 274, 317, 431, 551
MluI ACGCGT 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 7 cut(s) 105, 195, 258, 290, 345, 388, 417
MroXI GAANNNNTTC 1 cut(s) 129
MseI TTAA 2 cut(s) 285, 305
MslI CAYNNNNRTG 1 cut(s) 63
MspCI CTTAAG 1 cut(s) 304
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 2 cut(s) 294, 312
Mva1269I GAATGC 1 cut(s) 410
MvaI CCWGG 2 cut(s) 294, 312
MvnI CGCG 2 cut(s) 27, 591
NdeII GATC 5 cut(s) 49, 67, 116, 157, 576
NlaIII CATG 1 cut(s) 197
NlaIV GGNNCC 1 cut(s) 118
NruI TCGCGA 1 cut(s) 591
NspV TTCGAA 1 cut(s) 435
PceI AGGCCT 1 cut(s) 427
PctI GAATGC 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 129
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 1 cut(s) 630
Psp1406I AACGTT 1 cut(s) 42
Psp6I CCWGG 2 cut(s) 292, 310
PspGI CCWGG 2 cut(s) 292, 310
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 1 cut(s) 602
PsuI RGATCY 1 cut(s) 116
RruI TCGCGA 1 cut(s) 591
RsaI GTAC 2 cut(s) 24, 537
RsaNI GTAC 2 cut(s) 23, 536
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 2 cut(s) 285, 305
SatI GCNGC 1 cut(s) 629
Sau3AI GATC 5 cut(s) 49, 67, 116, 157, 576
Sau96I GGNCC 1 cut(s) 602
ScrFI CCNGG 2 cut(s) 294, 312
SduI GDGCHC 1 cut(s) 491
SexAI ACCWGGT 1 cut(s) 310
SfaNI GCATC 2 cut(s) 288, 364
SfcI CTRYAG 1 cut(s) 465
SfuI TTCGAA 1 cut(s) 435
SinI GGWCC 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 4 cut(s) 274, 317, 431, 551
SseBI AGGCCT 1 cut(s) 427
StuI AGGCCT 1 cut(s) 427
StyD4I CCNGG 2 cut(s) 292, 310
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 2 cut(s) 38, 348
TaiI ACGT 2 cut(s) 45, 599
TaqI TCGA 4 cut(s) 231, 350, 435, 451
TasI AATT 4 cut(s) 274, 317, 431, 551
Tru1I TTAA 2 cut(s) 285, 305
Tru9I TTAA 2 cut(s) 285, 305
TseI GCWGC 1 cut(s) 628
TspDTI ATGAA 1 cut(s) 520
Vha464I CTTAAG 1 cut(s) 304
VneI GTGCAC 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 602
XapI RAATTY 1 cut(s) 431
XmiI GTMKAC 1 cut(s) 464
XmnI GAANNNNTTC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.